生物多样性 ›› 2010, Vol. 18 ›› Issue (4): 398-407. DOI: 10.3724/SP.J.1003.2010.398
所属专题: 生物入侵
收稿日期:
2010-03-02
接受日期:
2010-06-13
出版日期:
2010-07-20
发布日期:
2010-07-20
通讯作者:
周立志
作者简介:
*E-mail: zhoulz@ahu.edu.cn基金资助:
Lingliang Cao, Lizhi Zhou(), Baowei Zhang
Received:
2010-03-02
Accepted:
2010-06-13
Online:
2010-07-20
Published:
2010-07-20
Contact:
Lizhi Zhou
摘要:
克氏原螯虾(Procambarus clarkii)是长江中下游地区较为常见的外来物种, 目前已经扩散到安徽境内的主要水系。我们采集了安徽境内长江、淮河和新安江三大流域的4个地区9个地点的182个样本, 利用9对微卫星分子标记, 通过PCR扩增和微卫星分型, 分析了其种群遗传多样性水平和遗传结构, 构建了地方种群的遗传距离格局。结果表明本研究区域克氏原螯虾种群遗传多样性处于较高水平, 总的期望杂合度(HE)和观测杂合度(HO)分别为0.78和0.36。望江种群遗传多样性最高(期望杂合度为0.76), 肥西种群遗传多样性最低(期望杂合度为0.56)。克氏原螯虾种群显示了极强的杂合子缺失, 人为捕捞可能是造成其种群私有等位基因数目较多和杂合子缺失的主要原因。地方种群分化系数(Fst)与地理距离呈显著正相关(r= 0.33, P< 0.05), 望江种群和城东湖种群存在明显的跳跃性扩散(jump dispersal)。因此, 水系间的交流是种群扩散的主要途径, 人为贸易促使克氏原螯虾种群在不同地区的交流, 对其种群扩散也有一定的作用。
曹玲亮, 周立志, 张保卫 (2010) 安徽三大水系入侵物种克氏原螯虾的种群遗传格局. 生物多样性, 18, 398-407. DOI: 10.3724/SP.J.1003.2010.398.
Lingliang Cao, Lizhi Zhou, Baowei Zhang (2010) Genetic patterns of an invasive Procambarus clarkii population in the three river basins of Anhui Province. Biodiversity Science, 18, 398-407. DOI: 10.3724/SP.J.1003.2010.398.
图1 克氏原螯虾样本采集点。样本编号对应的地方种群见表1, 括号中的数字表示取样次数。
Fig. 1 Geographical distribution of the nine Procambarus clarkii populations in the study. The abbreviated codes refer to local populations in Table 1. The numbers in parentheses indicate sampling times.
地方种群 Local populations | 编号 Code | 采集点 Sampling site | 样本量 Sample size | 期望杂合度 HE | 观测杂合度 HO | 平均等位 基因数 MNA | 私有等位基因数 Np |
---|---|---|---|---|---|---|---|
淮河 Huaihe River | |||||||
城东湖 Chengdong Lake | Cd | 霍邱黄泊渡 Huangbodu, Huoqiu | 24 | 0.72 | 0.31 | 6.62 | 5 |
江淮之间 Between Yangtze River and Huaihe River | |||||||
巢湖 Chaohu Lake | Ch | 义城 Yicheng | 7 | 0.65 | 0.24 | 4.89 | 5 |
长临河口 Changlin River Mouths | 3 | 0 | |||||
肥西 Feixi | Fx | 柿树岗 Stream in Shishugang | 12 | 0.56 | 0.39 | 4.44 | 3 |
合肥 Hefei | Hf | 董铺水库 Dongpu Reservoir | 6 | 0.57 | 0.33 | 4.75 | 2 |
三十头支流 Stream in Sanshitou | 9 | 1 | |||||
长江 Yangtze River | |||||||
菜子湖 Caizi Lake | Czh | 王湾咀 Wangwanzui | 7 | 0.67 | 0.47 | 9.89 | 4 |
杨湾 Yangwan | 3 | 0 | |||||
肖店 Xiaodian | 21 | 6 | |||||
双店 Shuangdian | 12 | 3 | |||||
升金湖 Shengjin Lake | Sj | 升金湖 Shenjin Lake | 13 | 0.71 | 0.56 | 6.33 | 5 |
东至 Dongzhi | Dz | 香口乡 Stream in Xiangkou | 21 | 0.74 | 0.33 | 7.55 | 9 |
望江 Wangjiang | Wj | 华阳河 Huayang River | 20 | 0.76 | 0.17 | 7.44 | 18 |
新安江 Xin'anjiang River | |||||||
新安江 Xin'anjiang River | Xa | 屯光镇 Tunguang | 24 | 0.64 | 0.39 | 6.00 | 3 |
总计 Total | 182 | 0.67 | 0.35 | - | - |
表1 克氏原螯虾样本数量分布和遗传变异
Table 1 Sample size, study sites and genetic diversity of the Procambarus clarkii populations
地方种群 Local populations | 编号 Code | 采集点 Sampling site | 样本量 Sample size | 期望杂合度 HE | 观测杂合度 HO | 平均等位 基因数 MNA | 私有等位基因数 Np |
---|---|---|---|---|---|---|---|
淮河 Huaihe River | |||||||
城东湖 Chengdong Lake | Cd | 霍邱黄泊渡 Huangbodu, Huoqiu | 24 | 0.72 | 0.31 | 6.62 | 5 |
江淮之间 Between Yangtze River and Huaihe River | |||||||
巢湖 Chaohu Lake | Ch | 义城 Yicheng | 7 | 0.65 | 0.24 | 4.89 | 5 |
长临河口 Changlin River Mouths | 3 | 0 | |||||
肥西 Feixi | Fx | 柿树岗 Stream in Shishugang | 12 | 0.56 | 0.39 | 4.44 | 3 |
合肥 Hefei | Hf | 董铺水库 Dongpu Reservoir | 6 | 0.57 | 0.33 | 4.75 | 2 |
三十头支流 Stream in Sanshitou | 9 | 1 | |||||
长江 Yangtze River | |||||||
菜子湖 Caizi Lake | Czh | 王湾咀 Wangwanzui | 7 | 0.67 | 0.47 | 9.89 | 4 |
杨湾 Yangwan | 3 | 0 | |||||
肖店 Xiaodian | 21 | 6 | |||||
双店 Shuangdian | 12 | 3 | |||||
升金湖 Shengjin Lake | Sj | 升金湖 Shenjin Lake | 13 | 0.71 | 0.56 | 6.33 | 5 |
东至 Dongzhi | Dz | 香口乡 Stream in Xiangkou | 21 | 0.74 | 0.33 | 7.55 | 9 |
望江 Wangjiang | Wj | 华阳河 Huayang River | 20 | 0.76 | 0.17 | 7.44 | 18 |
新安江 Xin'anjiang River | |||||||
新安江 Xin'anjiang River | Xa | 屯光镇 Tunguang | 24 | 0.64 | 0.39 | 6.00 | 3 |
总计 Total | 182 | 0.67 | 0.35 | - | - |
位点 Loci | 重复单元Repeat unit | 引物序列 Primer sequence(5'-3') | 退火温度 Annealing temperature (°C) | 长度 Size range (bp) | 登录号 Accession no. | Na | HE | HO | PIC | Fis | Fit | Fst |
---|---|---|---|---|---|---|---|---|---|---|---|---|
PclG33 | (GT)21 | F: FAM-TTCGAGGCGTTGCTGATTGTAAGT R: CAAGGAAGCGTATAGCCGGAGTCT | 56 | 120-180 | AF290936 | 23 | 0.83 | 0.46 | 0.81 | 0.50 | 0.56 | 0.110 |
PCL29 | (GA)27 | F: HEX-CACTCAAGCCTGCCCTCACTC R: GTCTCTTCCTCCCCCATTCTCAC | 56 | 170-214 | EF564126 | 14 | 0.87 | 0.44 | 0.85 | 0.55 | 0.55 | 0.108 |
PCL47 | (TG)13 | F: TAMRA-ACTCTGCCCATTGTTTCTCGG R: AGCCCTTGGACCCCGCCTATC | 56 | 324-344 | EF564128 | 10 | 0.79 | 0.82 | 0.75 | 0.57 | 0.62 | 0.110 |
PCL33 | (TG)30 | F: FAM-ACTCCTGTCCCATTTCACTAC R: ACAACTAACTGCAACTCATTCTA | 56 | 132-158 | EF564127 | 24 | 0.81 | 0.43 | 0.78 | 0.49 | 0.54 | 0.100 |
PCL28 | (CA)29 | F: HEX-CCTACCAGAGAACCCAAAACAGAA R: GTCAGCCTCCACCACATCACTT | 56 | 229-239 | EF564125 | 23 | 0.82 | 0.35 | 0.80 | 0.50 | 0.56 | 0.111 |
PCL17 | (TC)17 | F: TAMRA-TTCACTACCGCCCACAGGATG R: TAGGCACCGCACTTATTAGACCAG | 56 | 370-422 | EF564122 | 18 | 0.71 | 0.10 | 0.69 | 0.45 | 0.51 | 0.111 |
PclG48 | (CA)12 | F: FAM-CTGTTGGTGATTTCCGTCAATTTT R: AGATTCAACGCTGTGTTCCTGATC | 56 | 146-190 | AF290941 | 22 | 0.81 | 0.24 | 0.79 | 0.47 | 0.53 | 0.108 |
PCL02 | (TG)30 | F: HEX-GAAGACGGGACACCACGAG R: ATCAAATCAAACGAAGCAAGAAAG | 56 | 245-271 | EF564119 | 24 | 0.86 | 0.23 | 0.84 | 0.46 | 0.52 | 0.113 |
PCL50 | (GA)12 | F: TAMRA-AAGCGCTGAAATGCACAAACAAGA R: CAAGCCCCGAGGTCAAAGGTC | 56 | 424-525 | EF564129 | 19 | 0.53 | 0.17 | 0.51 | 0.48 | 0.53 | 0.105 |
表2 克氏原螯虾9个微卫星位点的引物序列、遗传差异、多态信息含量和F-统计检验
Table 2 Primer sequence, genetic differentiation, polymorphism information content and Wright’ F-statistics at nine microsatellite loci of Procambarus clarkii
位点 Loci | 重复单元Repeat unit | 引物序列 Primer sequence(5'-3') | 退火温度 Annealing temperature (°C) | 长度 Size range (bp) | 登录号 Accession no. | Na | HE | HO | PIC | Fis | Fit | Fst |
---|---|---|---|---|---|---|---|---|---|---|---|---|
PclG33 | (GT)21 | F: FAM-TTCGAGGCGTTGCTGATTGTAAGT R: CAAGGAAGCGTATAGCCGGAGTCT | 56 | 120-180 | AF290936 | 23 | 0.83 | 0.46 | 0.81 | 0.50 | 0.56 | 0.110 |
PCL29 | (GA)27 | F: HEX-CACTCAAGCCTGCCCTCACTC R: GTCTCTTCCTCCCCCATTCTCAC | 56 | 170-214 | EF564126 | 14 | 0.87 | 0.44 | 0.85 | 0.55 | 0.55 | 0.108 |
PCL47 | (TG)13 | F: TAMRA-ACTCTGCCCATTGTTTCTCGG R: AGCCCTTGGACCCCGCCTATC | 56 | 324-344 | EF564128 | 10 | 0.79 | 0.82 | 0.75 | 0.57 | 0.62 | 0.110 |
PCL33 | (TG)30 | F: FAM-ACTCCTGTCCCATTTCACTAC R: ACAACTAACTGCAACTCATTCTA | 56 | 132-158 | EF564127 | 24 | 0.81 | 0.43 | 0.78 | 0.49 | 0.54 | 0.100 |
PCL28 | (CA)29 | F: HEX-CCTACCAGAGAACCCAAAACAGAA R: GTCAGCCTCCACCACATCACTT | 56 | 229-239 | EF564125 | 23 | 0.82 | 0.35 | 0.80 | 0.50 | 0.56 | 0.111 |
PCL17 | (TC)17 | F: TAMRA-TTCACTACCGCCCACAGGATG R: TAGGCACCGCACTTATTAGACCAG | 56 | 370-422 | EF564122 | 18 | 0.71 | 0.10 | 0.69 | 0.45 | 0.51 | 0.111 |
PclG48 | (CA)12 | F: FAM-CTGTTGGTGATTTCCGTCAATTTT R: AGATTCAACGCTGTGTTCCTGATC | 56 | 146-190 | AF290941 | 22 | 0.81 | 0.24 | 0.79 | 0.47 | 0.53 | 0.108 |
PCL02 | (TG)30 | F: HEX-GAAGACGGGACACCACGAG R: ATCAAATCAAACGAAGCAAGAAAG | 56 | 245-271 | EF564119 | 24 | 0.86 | 0.23 | 0.84 | 0.46 | 0.52 | 0.113 |
PCL50 | (GA)12 | F: TAMRA-AAGCGCTGAAATGCACAAACAAGA R: CAAGCCCCGAGGTCAAAGGTC | 56 | 424-525 | EF564129 | 19 | 0.53 | 0.17 | 0.51 | 0.48 | 0.53 | 0.105 |
图2 以邻接法构建的克氏原螯虾个体的系统树。样本编号对应的地方种群见表1。
Fig. 2 A neighbor-joining tree of Procambarus clarkii based on the microsatellite data. The abbreviated codes refer to local populations in Table 1.
图3 用Structure获得的平均可能性和ΔK评估(利用Structure软件7次重复计算ΔK的平均值)
Fig. 3 Plot of mean likelihood values (averaged across 7 runs) and estimate of ΔK for each possible value of K using the data obtained from Structure software
图4 利用Structure构建的9个地方种群结构(显示当潜在亚种群等于2、3和4时种群的聚类关系)。纵坐标表示各种群中的单个个体占种群祖先成分的比例。
Fig. 4 Structure bar plots of Procambarus clarkii from nine local populations. The assignment results show K = 2, 3 and 4, respectively. Each vertical bar represents one individual, and sampling location codes (see Table 1) are indicated along the X-axis. Y-coordinate denotes the proportion of ancestry components in an individual in relation to other population.
Ch | Czh | Fx | Sj | Dz | Wj | Hf | Xa | Cd | |
---|---|---|---|---|---|---|---|---|---|
Ch | 4.00 | 1.56 | 4.08 | 2.59 | 1.63 | 2.86 | 1.52 | 3.13 | |
Czh | 0.06 | 1.67 | 9.49 | 2.52 | 1.62 | 5.75 | 1.38 | 1.92 | |
Fx | 0.14 | 0.13 | 2.89 | 1.23 | 2.00 | 1.71 | 0.86 | 1.27 | |
Sj | 0.06 | 0.03 | 0.08 | 2.72 | 2.58 | 3.97 | 1.27 | 2.03 | |
Dz | 0.09 | 0.09 | 0.17 | 0.08 | 2.66 | 1.54 | 2.72 | 2.26 | |
Wj | 0.13 | 0.13 | 0.11 | 0.09 | 0.09 | 1.80 | 1.92 | 2.41 | |
Hf | 0.08 | 0.04 | 0.13 | 0.06 | 0.14 | 0.12 | 1.11 | 1.57 | |
Xa | 0.14 | 0.15 | 0.23 | 0.16 | 0.08 | 0.12 | 0.18 | 1.69 | |
Cd | 0.07 | 0.12 | 0.16 | 0.11 | 0.10 | 0.09 | 0.14 | 0.13 |
表3 9个克氏原螯虾种群基因流(对角线上)和遗传分化系数(Fst) (对角线下)。种群代号见表1。
Table 3 Gene flow (above diagonal) and genetic diversity (Fst) (below diagonal) in nine Procambarus clarkii populations. Population codes see Table 1.
Ch | Czh | Fx | Sj | Dz | Wj | Hf | Xa | Cd | |
---|---|---|---|---|---|---|---|---|---|
Ch | 4.00 | 1.56 | 4.08 | 2.59 | 1.63 | 2.86 | 1.52 | 3.13 | |
Czh | 0.06 | 1.67 | 9.49 | 2.52 | 1.62 | 5.75 | 1.38 | 1.92 | |
Fx | 0.14 | 0.13 | 2.89 | 1.23 | 2.00 | 1.71 | 0.86 | 1.27 | |
Sj | 0.06 | 0.03 | 0.08 | 2.72 | 2.58 | 3.97 | 1.27 | 2.03 | |
Dz | 0.09 | 0.09 | 0.17 | 0.08 | 2.66 | 1.54 | 2.72 | 2.26 | |
Wj | 0.13 | 0.13 | 0.11 | 0.09 | 0.09 | 1.80 | 1.92 | 2.41 | |
Hf | 0.08 | 0.04 | 0.13 | 0.06 | 0.14 | 0.12 | 1.11 | 1.57 | |
Xa | 0.14 | 0.15 | 0.23 | 0.16 | 0.08 | 0.12 | 0.18 | 1.69 | |
Cd | 0.07 | 0.12 | 0.16 | 0.11 | 0.10 | 0.09 | 0.14 | 0.13 |
图5 利用IBDWS构建的地理距离和遗传分化系数Fst(log)线性关系(遗传分化和地理距离存在显著正相关r = 0.33, P < 0.05)
Fig. 5 Relationships between geographical distance and population genetic differentiation index (log) of nine sample sites using IBDWS. A Mantel Test indicated a significant correlation (r= 0.33, P< 0.05)
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