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New taxa of the order Hymenoptera in 2021
Huanxi Cao, Arong Luo, Zeqing Niu, Yanzhou Zhang, Hui Xiao, Chaodong Zhu
Biodiv Sci    2022, 30 (8): 22162.   DOI: 10.17520/biods.2022162
Accepted: 02 July 2022

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Aim: The aim of this study is to catalogue and summarize new taxa of the order Hymenoptera published in 2021.

Methods: In 2021, 355 journal publications on new taxa in the order Hymenoptera were obtained and analyzed by researching the available zoological databases.

Results: Based on the collected journal publications, there were 1,152 records on the new taxa of Hymenoptera for 66 families and 416 genera in 21 superfamilies, including 5 new families, 4 subfamilies, 83 new genera, 3 subgenera, 1,054 new species, and 3 new subspecies. A total of 980 extant hymenopterans from 52 families and 332 genera in 18 superfamilies were recorded in 309 of the 355 journal publications, including 2 new families, 26 new genera, 3 new subgenera, 946 new species, and 3 new subspecies. Another 46 journal publications on fossil Hymenoptera recorded 172 extinct Hymenoptera from 27 families and 86 genera in 14 superfamilies, including 3 new families, 4 new subfamilies, 57 new genera, and 108 new species. In 2021, 235 new taxa from 34 families and 91 genera in 17 superfamilies were recorded in 83 of the 309 relevant journal publications in China. These include 3 new genera (1 extinct) and 232 new species (2 extinct). The above 2 new extant genera were described from Taiwan and Zhejiang, China. The five Chinese provinces with the most new species published in 2021 are Yunnan, Zhejiang, Fujian, Xizang, and Xinjiang. Based on the publications in 2021, Ichneumonoidea was the superfamily with the highest number of new species, accounting for 32.5% (307/946), 19.4% (21/108), and 37.0% (85/230) of the extant, extinct, and Chinese new species in the Hymenoptera database, respectively. Grouping the extant Hymenoptera new species by continental regions and subregions shows that 56.9% (538) of the new species were discovered in Asia, 28.6% (271) in East Asia and 24.3% (230) in China, which tops the list of regions, subregions, and countries with the most new species. Of the 355 publications in 76 journals, 348 were published in English, 4 in Chinese, and 3 in French.

Conclusion: These results indicate that the taxonomy of Hymenoptera in China plays an important positive role in expanding our understanding of the order Hymenoptera around the world.

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Advances on the origin and evolution of biodiversity
Cheng Xue, Boka Li, Tianyu Lei, Hongyan Shan, Hongzhi Kong
Biodiv Sci    2022, 30 (10): 22460.   DOI: 10.17520/biods.2022460
Accepted: 12 October 2022

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Aims: The origin and evolution of biodiversity is one of the most important scientific questions in the field of life sciences. The accumulation of multi-omics data and the development of related analytical techniques have greatly promoted our understanding and research on the origin and evolution of biodiversity, thereby making it possible to clarify the processes and reveal the mechanisms of biological evolution events. On the occasion of the 30th Anniversary of the inaugural of Biodiversity Science, this paper briefly retrospects the important research progress of the origin and evolution of biodiversity in recent years, aiming to help the readers comprehend the present development on this topic.
Progresses: In the past decade, research on the origin and evolution of biodiversity has made many significant advancements, including the reconstruction of the tree of life, the spatiotemporal distribution pattern of biodiversity, the concepts of species, speciation, and adaptive evolution, and the origin and diversification of new characters. Based on these advancements, phylogenetic relationships among many taxa were clarified; some historical causes of biodiversity distribution patterns were revealed; some new species concepts and speciation models were proposed; and some molecular mechanisms of new characters and functions were revealed.
Prospect: We believe that the more accurate reconstruction of the tree of life, in-depth mining of genomic data, and the multidisciplinary integration would be the main trends in biodiversity research.

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Theoretical advances in biodiversity research
Shaopeng Wang, Mingyu Luo, Yanhao Feng, Chengjin Chu, Dayong Zhang
Biodiv Sci    2022, 30 (10): 22410.   DOI: 10.17520/biods.2022410
Accepted: 11 October 2022

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Background & Aims: Biodiversity is a key feature of ecosystem complexity. Understanding the origination and maintenance of biodiversity has been a major task of theoretical ecology research. Here we reviewed recent advances in theoretical studies on biodiversity.
Progresses: We first summarized recent progress in modern coexistence theory and process-based community assembly theory. We then synthetized different approaches for inferring the presence and strengths of species interactions. Lastly, we introduced the general framework of eco-evolutionary models and their applications in biodiversity research.
Prospects: We ended with a brief discussion on future developments of biodiversity theory, particularly in integrating processes across scales and predicting biodiversity responses to global changes.

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Global new taxa of vascular plants published in 2021
Xia Wan, Li-Bing Zhang
Biodiv Sci    2022, 30 (8): 22116.   DOI: 10.17520/biods.2022116
Accepted: 23 June 2022

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Aims: Vascular plants provide most of the planet’s biomass. Thousands of new vascular plant species have been discovered and described every year recently. Timely analysis of the published data of new vascular plants taxa can show the research hotspots of vascular plant taxonomy in details and provide reference data for studies of related fields such as botany, ecology, and conservation science.

Methods: The data were derived from the IPNI (https://www.ipni.org/), Tropicos (https://www.tropicos.org/), WCSP (https://wcsp.science.kew.org/) and The Plant List (http://www.theplantlist.org/). Statistics of new taxa of vascular plants published in 2021 were available as of April 16, 2022 excluding new combinations, new statuses or new names and bryophyte data.

Results: In 2021, at least 2,219 new taxa of vascular plants were described worldwide, including 1 new subfamily, 7 new tribes, 7 new subtribes, 68 new genera, 7 new subgenera, 15 new sections, 8 new subsections, 10 new series, 1,979 new species, 46 new subspecies, 59 new varieties, and 12 new forms. These new taxa belong to 185 families and 881 genera, among which Orchidaceae, Asteraceae and Rubiaceae had received more attentions. In 2021, 2,219 new taxa of vascular plants were described worldwide in 165 journals and 14 books by 1,942 scholars, of which 42 authors have published more than 11 new taxa. Phytotaxa and PhytoKeys were the top two journals in terms of the numbers of new taxa of vascular plants published in 2021 and published 586 and 112, respectively. Among the 2,096 new species and infraspecific taxa, 1,940 belonged to angiosperms, 147 to pteridophytes, and only 9 to gymnosperms, among which Orchidaceae are the most, with 227. The 2,096 new species and infraspecific taxa were from 115 countries and regions in the world. Asia and South America were the hotspots of discoveries of new species and infraspecific taxa, with 837 and 571, respectively. By country, China, Brazil, and Madagascar were the top three with the most new species and infraspecific taxa discovered in 2021, with 283, 269, and 169, respectively. Considering the fact that IPNI added 797 new species described in 2020 after February 1, 2021, we estimate ca. 700 new species described in 2021 will be added in various databases after April 16, 2022. This will increase the number of new species (and infraspecific taxa) published in 2021 to ca. 2,800, which is comparable to the annual numbers since 2001.

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Chinese Forest Biodiversity Monitoring Network (CForBio): Twenty years of exploring community assembly mechanisms and prospects for future research
Xiangcheng Mi, Xugao Wang, Guochun Shen, Xubin Liu, Xiaoyang Song, Xiujuan Qiao, Gang Feng, Jie Yang, Zikun Mao, Xuehong Xu, Keping Ma
Biodiv Sci    2022, 30 (10): 22504.   DOI: 10.17520/biods.2022504
Accepted: 08 November 2022

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Background & Aim: Since 2004, the Chinese Forest Biodiversity Monitoring Network (CForBio) has established 23 large forest dynamics plots along a latitude gradient ranging from cold temperate forests to tropical forests in China. The forest dynamics plots include about 1,893 species, representing one-sixth of the known tree diversity in China. With > 700 papers and > 400 papers published in international journals, CForBio researchers have made significant contributions toward understanding mechanisms of forest community assembly. This review summarizes the progresses achieved by CForBio researchers, including knowledge of the spatiotemporal patterns of plant communities, the roles of habitat filtering, biotic interactions, effects of dispersal limitation and regional effects in structuring plant communities, and the application of new technologies in understanding community assembly.
Review Results: (1) Habitat filtering and dispersal limitation jointly affect the diversity patterns such as species-area relationship and β diversity, but their relative effects vary among plots and across scales. (2) Habitat filtering generally plays an important role in forest community assembly. However, it is difficult to quantify its relative importance. (3) Conspecific negative density dependence (CNDD) is prevalent in these CForBio plots across latitudes. In addition, the strength of CNDD is found to be mediated by plant mycorrhizal type, and varies with life history, functional traits and environmental change. (4) Dispersal limitation predominantly shapes community structure at local scales, whereas regional effects, such as regional pool size and geological history, strongly determine spatial patterns of biodiversity among communities over broader biogeographic regions. (5) New technologies provide novel ways to advance studies of community assembly from both macro and micro-perspectives. On one hand, remote sensing enables us to monitor forest community biodiversity from local to large scales in a cost-effective way. On the other hand, transcriptomics and metabolomics enable us to precisely infer molecular mechanisms of community assembly.
Perspectives: This review also discusses the limitations in current community assembly studies and proposes some issues and potential topics to be considered for future studies. We discuss the vital role of CForBio in promoting the application and future development of community assembly studies, including (1) the spatiotemporal scale problem; (2) the multi-dimensional (taxonomic, functional, and phylogenetic diversity) and multi-trophic biotic interactions; (3) the advantages of interdisciplinary and multipath approaches such as the “observational evidence-controlled experiment- ecosystem model” methodology; (4) the effect of global change on community assembly; and (5) the applications of community assembly findings for addressing forest management challenges. In conclusion, the long-term forest biodiversity monitoring is fundamental for a comprehensive understanding of community assembly and serves as an important platform for bridging studies on theories of assembly and on forest management challenges.

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2021 annual report on new taxa and nomenclatural changes of Chinese plants
Cheng Du, Jun Liu, Wen Ye, Shuai Liao
Biodiv Sci    2022, 30 (8): 22207.   DOI: 10.17520/biods.2022207
Accepted: 31 August 2022

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Aim: Each year, more than 220 species from China are documented as new species. However, much of this information has yet to be updated in international databases. Here we aimed to update the annual report with the newly discovered taxa and name changes of existing plants in China from the year 2021.

Methods: Information on newly discovered taxa and name changes for Chinese higher plants were collected by reviewing 222 journals and monographs, where 380 articles published in 62 journals and 2 monographs concerning the new taxa and nomenclatural changes of higher plants published in 2021. For each species, we compiled the scientific name, author, location, type specimen, and other relevant information.

Results: In 2021, a total of 342 new taxa of higher plants from China were reported, including 1 new family, 11 new genera, 289 new species, 3 new subspecies, 18 new varieties, and 20 new forms. The newly described species belong to the Marchantiophyta (5 species), Bryophyta (4 species), Lycopodiophyta (3 species), Pteridophyta (22 species), Gymnospermae (2 species), and Magnoliophyta (253 species). A total of 111 new species had been published with detailed molecular evidence, 76 of which were considered threatened species according to IUCN standards. Four provinces in southwestern China, including Yunnan, Xizang, Sichuan, and Guangxi, were the sources of the majority of the discoveries. The species found in these regions account for 63.3% of the total reports collected in our review. Taiwan, Hainan, Yunnan, Zhejiang, and Guangdong have the highest densities of newly discovered species. Additionally, we identified 134 new combinations and new rank names. We identified 9 replacement names transferred from other species distributed across China. Sixty-two plants were reported as novel to China, 92 names were given as synonyms of 62 taxa, 7 names were revised, and 2 genera and 10 species were re-recognized. Further, 49 names were designated lectotypes or neotypes, 9 species were rediscovered, and 7 were considered no longer present in China.

Conclusion: In 2021, a net increase of 364 new plant taxa of higher plants occurred in China, accounting for 0.98% of the total growth. Also, 230 plant names have been changed, accounting for 0.62% of total changes. The high number of new plant species found in China has been consistent and held in the year 2021, implying that the country, mainly located in the subtropical regions of the northern hemisphere, still has many plants waiting to be discovered.

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Wildlife monitoring and research using camera-trapping technology across China: The current status and future issues
Zhishu Xiao, Wenhong Xiao, Tianming Wang, Sheng Li, Xinming Lian, Dazhao Song, Xueqin Deng, Qihai Zhou
Biodiv Sci    2022, 30 (10): 22451.   DOI: 10.17520/biods.2022451
Accepted: 08 November 2022

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Background: Innovation in the application of intelligent sensors, artificial intelligence, and information technology has greatly increased the potential for global biodiversity conservation and restoration.
Aims: Considering the significant advances in wildlife monitoring using infrared cameras at home and abroad, combined with a literature review, this paper aims to assess the current status and relevant topics from wildlife camera-trapping monitoring research in China since 2011. Combined with important research cases at home and abroad to explore the cutting-edge issues of camera-trapping monitoring research, this paper will provide suggestions for the future of camera-trapping monitoring research in China.
Main issues: The main contents of this paper are as follows: (1) We conducted and summarized a literature review of wildlife camera-trapping monitoring research in China during the past 30 years (1991-2021); (2) By reviewing major research cases in China since 2011, we assessed five primary topics such as technical methods, species discovery and inventory, morphology and behavioral research, ecological research, and conservation and management; (3) Utilizing recent research cases abroad, we evaluated cutting-edge trends in the field of infrared camera monitoring research; and (4) We provide relevant suggestions for the future development of wildlife camera-trapping monitoring research in China.
Conclusions: Through our review, this paper underscores the innovative trend of infrared camera technology application and development at home and abroad in wildlife monitoring and research during the past decade. We provide a reference basis for China’s future development in this field, so as to better serve the construction of China’s biodiversity monitoring and research network as well as the construction of protected areas systems centering on national parks. Finally, we promote the construction of a national ecological civilization by providing a scientific basis for making decisions in ensuring ecological security and biosafety.

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Advances of marine biogeography in China: Species distribution model and its applications
Yunwei Dong, Menghuan Bao, Jiao Cheng, Yiyong Chen, Jianguo Du, Yangchun Gao, Lisha Hu, Xincheng Li, Chunlong Liu, Geng Qin, Jin Sun, Xin Wang, Guang Yang, Chongliang Zhang, Xiong Zhang, Yuyang Zhang, Zhixin Zhang, Aibin Zhan, Qiang He, Jun Sun, Bin Chen, Zhongli Sha, Qiang Lin
Biodiv Sci    2024, 32 (5): 23453.   DOI: 10.17520/biods.2023453
Accepted: 02 March 2024

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Background & Aim: Marine biogeography is a subject investigating the spatiotemporal distributions of marine organisms and the processes and drivers of changes in species distributions. Research in marine biogeography is promising for the conservation of marine biodiversity and the stability of ecosystem functioning and crucial for the sustainability of utilizing marine resources. Species distribution models (SDMs) are an important tool for assessing and predicting the biogeographical changes in marine species distributions.

Progresses: This review consists of three main parts: (1) the development process and current status of marine biogeography studies in China; (2) the commonly used approaches to answer the questions related to marine biogeography with a special focus on SDMs; (3) the research trends and hotspots of marine biogeography studies in China, mainly concerning the shifts in species distribution under global changes, phylogeography of marine species, biological invasion, population connectivity, marine conservation planning, marine ecological restoration and recovery, adaptation of marine species to extreme environments, as well as management of marine fisheries and mariculture planning.

Prospects: In this review, we further outlined the prospects for the future development of marine biogeography and emphasized the importance of optimizing SDMs. We also called for developing comprehensive databases of marine environments and organisms to strengthen the integration of marine biogeography with other disciplines. We hope this review will provide useful insights for the studies of marine biogeography in China.

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A review of ecosystem restoration: Progress and prospects of domestic and abroad
Feng Li, Chaonan Cheng, Rui Yang
Biodiv Sci    2022, 30 (10): 22519.   DOI: 10.17520/biods.2022519
Accepted: 08 November 2022

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Background: Climate change and increased human activity lead to ecosystem degradation, loss of biodiversity and reduced capacity to sustain the biosphere, as well as significantly constrain sustainable socio-economic development. Ecosystem degradation continues to be a global concern, and extensive conservation and restoration efforts have been implemented worldwide to address this problem.
Progresses: In this paper, we first explore the concepts and theories of ecosystem restoration and how they developed. Secondly, we summarize key elements associated with ecosystem restoration, e.g. ecosystem services and values, biodiversity conservation, climate change and carbon storage, nature reserves, monitoring systems and adaptive management, and equity and multi-participation. Then, we review the problem of ecosystem degradation and the extent of restoration efforts in China’s forests, grasslands, rivers and wetlands, and marine and coastal zones. We explore the progress and shortcomings of three measures, in particular, China’s ecological conservation red line scheme, ecosystem restoration in protected areas and ecological protection and restoration in national space planning.
Prospect: We conclude this paper by exploring integrated conservation and systematic land management approaches to address ecosystem degradation. We discuss the policies and channels of diversified financing of ecosystem restoration, exploratory practices in wilderness ecological conservation and restoration, applied research in urban ecosystem restoration, and ecosystem restoration for the conservation and maintenance of biodiversity to inform further research and practical application of ecosystem restoration efforts in China.

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Whole genome resequencing approach for conservation biology of endangered plants
Zhaoyang Jing, Keguang Cheng, Heng Shu, Yongpeng Ma, Pingli Liu
Biodiv Sci    2023, 31 (5): 22679.   DOI: 10.17520/biods.2022679
Accepted: 21 March 2023

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Background & Aims: Increasing attention is focused on global change and loss of biodiversity. Genetics is an important tool in the conservation of threatened species, which have greatly promoted our understanding of diverse areas in conservation biology. However, some key scientific issues in conservation biology, including evolutionary history, endangered mechanism, genetic basis of adaptive evolution and inbreeding depression, are remain to be understood. Spurred by technological advances in high-throughput sequencing, conservation genomics are developed by using of new genomic techniques to solve problems in conservation biology, providing new approaches to deep understanding of the key issues in conservation biology. This paper briefly summarizes the important research progress in the conservation genomics based on whole genome resequencing, aiming to promote the conservation biology of threatened plant in China.
Progress: Whole genome resequencing, being the highest genomic resolution among current methods in conservation genomics, has made many significant advancements, including classification of phylogenetic relationships between unresolved taxa, the reconstruction of population structure, genomic diversity, demographic history, adaptive evolution and inbreeding depression. Based on these advancements, conservation taxa and conservation units are identified, the evolutionary history and endangered causes of species are revealed and the genetic basis of adaptive evolution and inbreeding depression are partly revealed.
Prospect: As whole-genome resequencing provides deep insights into the key issues in conservation biology, with the improvements of even higher throughput and lower cost, whole-genome resequencing will be a routine task in conservation biology studies.

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Research advances of plant invasion ecology over the past 10 years
Yanjie Liu, Wei Huang, Qiang Yang, Yu-Long Zheng, Shao-Peng Li, Hao Wu, Ruiting Ju, Yan Sun, Jianqing Ding
Biodiv Sci    2022, 30 (10): 22438.   DOI: 10.17520/biods.2022438
Accepted: 24 October 2022

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Background & Aims: Alien plant invasion has significantly threatened native biodiversity, ecological security, socio-economic development, and human health. Consequently, exploring the mechanisms of alien plant invasion and its ecological impacts are of great importance to the ecologically sustainable development of our country. Both questions are also key topics in the field of invasion ecology. Over the past decade, ecologists have conducted much research and achieved fruitful outcomes, providing theoretical guidance for the prevention and management of invasive alien plants and biodiversity conservation.
Progresses: Based on domestic and international studies in this field over the past decade, the present article reviews the progress of plant invasion ecology, focusing on the following three aspects of the field. First, we present the roles of species characteristics, biotic and abiotic environments on alien plant invasion. Second, we review the impacts of alien plant invasion on native ecosystems. Third, we briefly introduce the term ‘native plant invasion’ as an analog to alien plant invasion, as well as applications of multi-omics technology in the area.
Prospects: The review looks ahead to further developments in invasion ecology, including that (1) multiple species experiments rather than single species experiments are more suited to obtaining gerneralizable findings; (2) the geographical scale is increasing, such as from local scale to latitudinal gradient pattern; (3) more studies are integrating multiple invasion theories, rather than one hypothesis, into a unified framework.

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Progress and prospect of China biodiversity monitoring from a global perspective
Hui Wu, Xuehong Xu, Xiaojuan Feng, Xiangcheng Mi, Yanjun Su, Zhishu Xiao, Chaodong Zhu, Lei Cao, Xin Gao, Chuangye Song, Liangdong Guo, Donghui Wu, Jianping Jiang, Hao Shen, Keping Ma
Biodiv Sci    2022, 30 (10): 22434.   DOI: 10.17520/biods.2022434
Accepted: 13 October 2022

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Background & Aim: Analyzing biodiversity status requires multi-spatial scale, continuous monitoring across different ecosystems due to its heterogenous nature in both space and time. Therefore, monitoring networks are necessary for biodiversity conservation research. Biodiversity monitoring networks at the global, regional, and national scales, represented by GEO BON and APBON, have flourished. China has established a long-term monitoring network for ecosystems and species at the national scale. and the China Biodiversity Observation and Research Network (Sino BON) was launched in 2013 with strong support from the Chinese Academy of Sciences and the Ministry of Finance.
Review Results: Sino BON includes 10 subnetworks specialized at monitoring animals, plants and microbes and an additional network for near-ground remote sensing, which covers 30 main sites and 60 affiliated sites in China. Currently, Sino BON has created a research platform for multi-trophic interactions among soil microorganisms, insects, large mammals, underground forests to forest canopies. This platform provides an understanding of biodiversity change and its driving factors at the national level and may be used in protecting biodiversity and sustainable utilization of biological resources.
Perspectives: For further progresses, monitoring technology, monitoring areas, data standards and integrated information platforms require further development.

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Theoretical and practical research on conservation of Wild Plants with Extremely Small Populations in China
Yue Xu, Runguo Zang
Biodiv Sci    2022, 30 (10): 22505.   DOI: 10.17520/biods.2022505
Accepted: 14 October 2022

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Aims: Wild Plants with Extremely Small Populations (WPESP) are plant species with high risk of extinction that are in urgent need of conservation. This concept has become a hotspot of biodiversity conservation in China since it was first proposed. In 2010, China officially launched the Implementation Plan of Rescuing and Conserving China’s WPESP (2011-2015), which initiated conservation research efforts and achieved successful progress.
Methods: We conducted a topic search on Web of Science and on China National Knowledge Infrastructure (CNKI) with “extremely small population*” and “plant” as the search terms. We reviewed the research results and achievements from academic papers, dissertations, and conference papers in order to evaluate the conservation of WPESP in China.
Results: WPESP research provides an important theoretical basis to guide conservation practice. We systematically reviewed research on the conservation of WPESP in recent years from six aspects: (1) the survey and monitoring of population, community and habitat, (2) adaptation, (3) genetic diversity, (4) reproductive biology, (5) endangered mechanisms, and (6) dynamic models. In this paper, we reviewed WPESP conservation progress from five aspects: (1) in situ conservation, (2) ex situ conservation and germplasm conservation, (3) reintroduction, (4) artificial propagation, and (5) technical regulation system construction. We also proposed several priorities for future conservation research.
Conclusions: Based on current theoretical and practical research, we propose five priorities for future conservation research of WPESP in China. We suggest that the conservation list should be adjusted and improved periodically. Researchers should highlight the observation and prediction of population structure, reinforce research on the formation and recovery mechanisms of small populations and conduct long-term systematic studies of specific species. The WPESP concept should be promoted at international levels to increase its influence. We hope this review may provide a reference for national biodiversity protection and ecological civilization construction.

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Research progress on insect diversity
Mingqiang Wang, Arong Luo, Qingsong Zhou, Jingting Chen, Tingting Xie, Yi Li, Douglas Chesters, Xiaoyu Shi, Hui Xiao, Huanji Liu, Qiang Ding, Xuan Zhou, Yiping Luo, Yuanyuan Lu, Yijie Tong, Zhengyu Zhao, Ming Bai, Pengfei Guo, Sichong Chen, Akihiro Nakamura, Yanqiong Peng, Yanhui Zhao, Shuhua Wei, Xiaolong Lin, Huayan Chen, Shixiao Luo, Yanhui Lu, Liang Lu, Jianping Yu, Xin Zhou, Yi Zou, Hao Lu, Chaodong Zhu
Biodiv Sci    2022, 30 (10): 22454.   DOI: 10.17520/biods.2022454
Accepted: 08 November 2022

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Background & Aims: We reviewed progress on insect biodiversity research over the past 30 years and further analyzed the trends, focusing on varied study systems (e.g. forest, grassland and agriculture etc.) and important functional insect groups, such as pollinators, herbivores and predators.
Progresses: Declines of insect abundance and diversity are being reported worldwide. Anthropogenic disturbance, climate change, and other factors contribute to this crisis.
Strategies & Prospects: Studies of insect biodiversity have expanded from early comparisons of species richness on composition to multiple dimensions of diversity. Current studies include both in-depth work on morphological diversity and much deeper consideration of genetic, phylogenetic, and functional diversity. Moreover, the studies’ scale has expanded from local to global. The development of morphometrics and phylogenetic bioinformatics further contributes to understanding evolution and global patterns in diversity. We also need to pay more attention to topics on integrative taxonomy on functional insect groups, functional diversity, insect diversity within canopy, and species interaction networks.

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Progress on microbial species diversity, community assembly and functional traits
Cheng Gao, Liang-Dong Guo
Biodiv Sci    2022, 30 (10): 22429.   DOI: 10.17520/biods.2022429
Accepted: 17 October 2022

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Background: Microbes, collectively bacteria, fungi, archaea, and viruses, are the organisms that are widely distributed on earth, with a huge number of individuals and high diversity of species and genes. In order to adapt to various habitats, microbes have developed many life strategies, such as saprotroph, parasite and symbiont, and consequently contribute broadly to biogeochemical cycles, ecosystem succession and stability, environmental remediation, and human health. Research on microbial diversity had been limited by traditional monitoring techniques. Recently, benefiting from the development of high-throughput sequencing techniques and bioinformatics, understanding of microbial diversity has been significantly advanced.
Results: This study reviews the progress on the diversity distribution pattern and maintenance, community assembly and functional trait of microbes. Altitudinal distribution patterns and drivers of bacterial, archaeal, and fungal diversity have been demonstrated. Selection, dispersal, speciation and drift processes are important for the community assembly of bacteria, archaea, and fungi. Bacteria and fungi are diverse in functional traits, such as morphology, physiology and biochemistry, growth and propagation, dispersal and genome. Future study in microbial diversity should focus on fungal metagenomics, relationship between microbial diversity and ecosystem function, and ecosystem function of microbial interaction network.

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Historical review, current status and future prospects of global botanical gardens
Jingping Liao, Dujuan Ni, Tuo He, Hongwen Huang
Biodiv Sci    2023, 31 (9): 23256.   DOI: 10.17520/biods.2023256
Accepted: 16 August 2023

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Background: Botanical gardens have deep historical roots, drawing inspiration from the ancient “Shennong Herbal Garden” that has played a pivotal role in China’s herbal civilization. While the origins of modern botanical gardens can be traced back to the medicinal gardens of early European universities, their predecessors lie in medieval herb gardens, representing the rich heritage and evolutionary path of traditional botany and ancient gardens.

Review findings: Over the course of 500 years since the European Renaissance, modern botanical gardens have evolved into vital centers of science and art. They have transcended their roles as mere repositories of flora and fauna to become institutions that seamlessly blend nature, culture, art and science. These gardens have consistently embraced new challenges, adapted to changing circumstances, and taken on new missions, propelling them into an era of sustainable development, in which multiple models coexist harmoniously and at the heart of this transformation lies the core mission of ex situ conservation.

Recommendations: Looking ahead, the construction of China’s national botanical gardens should focus on creating efficient ex situ conservation networks while adhering to rigorous scientific standards. This entails implementing exemplary professional curation practices that bridge the historical legacy of botanical gardens with contemporary conservation imperatives. Prioritizing ex situ conservation efforts, China’s botanical garden community should curate national living collections and conduct high-level scientific research. This approach should be rooted in a renewed emphasis on the value of ex situ flora, ultimately contributing to the establishment of a world-class national botanical garden system. This system will advance plant conservation research, facilitate resource exploration and application, and foster sustainable economic and social development.

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The outlook and system construction for monitoring Essential Biodiversity Variables based on remote sensing: The case of China
Yu Ren, Shengli Tao, Tianyu Hu, Haitao Yang, Hongcan Guan, Yanjun Su, Kai Cheng, Mengxi Chen, Huawei Wan, Qinghua Guo
Biodiv Sci    2022, 30 (10): 22530.   DOI: 10.17520/biods.2022530
Accepted: 11 November 2022

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Background: Maintaining biodiversity is crucial to human beings. In recent years, the concept of Essential Biodiversity Variables (EBVs) has provided new insights into large-scale and long-time biodiversity monitoring. Looking at EBVs from a national monitoring perspective, some EBVs are anticipated to correspond with remote sensing-derived variables since remote sensing is the potential methodology able to offer globally qualified data with a high spatial and temporal resolution. However, the academic community still lacks consensual remote sensing variables that can correspond with EBVs solidly.
Aims: This study aims to (1) review the current researches of remote sensing on EBVs; (2) propose a new criterion called “repeatability” on the basis of the current four remote sensing biodiversity product prioritization criteria; (3) construct a list of remote sensing products for EBVs in China based on these criteria.
Problems & Prospects: First of all, there is a lack of systematic research on EBVs in China. Second, the potential of domestic satellites is not exploited enough. Third, some EBVs remote sensing products are not yet “repeatable”. In the future, there is a need to promote cooperation among scientists in the fields of ecology, remote sensing, and aerospace to further promote scientific research on the combination of EBVs and remote sensing.

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Progress in the research and conservation of China’s Felidae species
Sheng Li, Tianming Wang
Biodiv Sci    2022, 30 (9): 22560.   DOI: 10.17520/biods.2022560
Accepted: 30 September 2022

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Application of large language models in biodiversity research
Jiqi Gu, Jianping Chen, Jiangshan Lai
Biodiv Sci    2024, 32 (9): 24258.   DOI: 10.17520/biods.2024258
Accepted: 09 August 2024

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Background & Aims: With the development and advancement of artificial intelligence technology, large language models (LLMs), such as Kimi Chat, have begun to play a significant role in biodiversity research. LLMs’s deep learning and natural language processing technologies, augmented by human feedback reinforced learning (RLHF) and proximal policy optimization (PPO), offer new avenues for handling and analyzing large biodiversity data sets.
Progresses: We explore the application of LLMs, taking Kimi Chat as an example, in investigating biodiversity research questions, reviewing literature, designing hypotheses, organizing and analyzing data, and writing research papers, as well as its potential to enhance research efficiency and quality. (1) LLMs can quickly process vast amounts of scientific literature, helping researchers distill key information and swiftly catch up with the latest research trends in specific fields. (2) LLMs can also assist researchers in formulating research hypotheses and designing experimental protocols, thereby providing abundant scientific inspiration, broadening research perspectives, and enhancing the efficiency of the initial stages of research. (3) In terms of research design, LLMs can offer advice on data collection methods, design of experiment, and statistical analyses to ensure the scientific validity and the logic of the research design. (4) LLMs can assist in scientific writing and peer review processes by helping draft scientific papers and providing suggestions for revision and polishing to enhance the quality and readability of the papers, and it also supports researchers in understanding and responding to peer review comments and optimizing the presentation of research findings. We also discuss the challenges and limitations encountered during using LLMs, such as the need for professional judgment, the homogenization of research methods, the accuracy of data and results, and ethical issues. Additionally, we propose strategies for integrating this technology with traditional biodiversity research methods in the future.
Prospects: We demonstrates how LLMs can aid in biodiversity research, thus advancing scientific discovery and ecological conservation strategies.

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A dataset of the morphological, life-history, and ecological traits of snakes in China
Jiang Wang, Yifan Zhao, Yanfu Qu, Caiwen Zhang, Liang Zhang, Chuanwu Chen, Yanping Wang
Biodiv Sci    2023, 31 (7): 23126.   DOI: 10.17520/biods.2023126
Accepted: 12 July 2023

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As of January 2023, China has a total of 312 snake species, establishing itself as one of the most diverse countries in terms of snake biodiversity worldwide. The characteristics exhibited by snakes hold significant sway over their survival within their respective environments, making them an important role in the study of their evolutionary biology, ecology, and conservation biology. However, a comprehensive dataset encompassing the morphological, life-history, and ecological traits of Chinese snakes has yet to be established. Therefore, the primary objective of this study is to provide a comprehensive dataset comprising the various traits exhibited by Chinese snakes. To accomplish this goal, we conducted a systematic collection of data from a range of sources, including published snake books, the peer-reviewed and non-peer-reviewed literatures, as well as the Reptile Database (https://reptile-database.reptarium.cz/). Our data compilation encompasses 41 distinctive traits, which were classified into three main types: morphological traits (25 traits such as scales and teeth), life-history traits (11 traits such as body length, diet, foraging mode, reproductive modes, clutch size, egg size, activity time, and venomousness), and ecological traits (5 traits such as Chinese/island endemism, adult habitat, geographical and elevational distributions). Among all these 41 traits, apart from geographical distribution, mental and rostral scales, which are 100% complete, the data on other traits were incomplete to varying degrees, ranging from 7.72% to 99.70%. This dataset is the most up-to-date and comprehensive collection of Chinese snake traits available to date. It provides a unique and invaluable resource for exploring the evolution, biogeography, ecology, and conservation biology of Chinese snakes.

Database/Dataset Profile

Title A dataset of the morphological, life-history and ecological traits of snakes in China
Authors Jiang Wang, Yifan Zhao, Yanfu Qu, Caiwen Zhang, Liang Zhang, Chuanwu Chen, Yanping Wang
Corresponding author Yanping Wang (wangyanping@njnu.edu.cn)
Time range Until January 2023
Geographical scope The People's Republic of China, including Taiwan, Hongkong, and Macao
File size 610 KB
Data format .xlsx
Data link http://dataopen.info/home/datafile/index/id/288
http://doi.org/10.24889/do.202305002
https://www.biodiversity-science.net/fileup/1005-0094/DATA/2023126.zip
Database/Dataset composition The dataset provided in this study consists of one data file and two descriptive files in total. It comprises 41 distinct species characteristics, covering all 312 snake species found in China.
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A comparative analysis of the List of State Key Protected Wild Animals and other wildlife protection lists
Jinfeng Chen, Xinjing Wu, Hai Lin, Guofa Cui
Biodiv Sci    2023, 31 (6): 22639.   DOI: 10.17520/biods.2022639
Accepted: 25 May 2023

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Aims: The List of State Key Protected Wild Animals is a crucial legal foundation that guides the implementation of species conservation efforts, especially rescue plans for endangered species. The recently published and implement 2021 version of the List of State Key Protected Wild Animals, represents the first major revision in 32 years and is of immense importance for biodiversity conservation in China. Our study aims to assess the efficacy of its species conservation measures dictated by the List, offer insights, and aid future revisions.

Methods: Our study has summarized and organized a total of 1,520 species (with subspecies) based on the new version of the List of State Key Protected Wild Animals. We then selected four wildlife lists that are representative and relevant to conservation and conducted a statistical analysis of the conservation status and level of threat for the same species across different lists.

Results: The results indicate that the new version of the List of State Key Protected Wild Animals has broadened the scope of wildlife protection by adding 1,038 species to the previous list of 482 species (with subspecies) which was compiled in 1989, as we previously summarized. Of the new additions, 43 species have been categorized as national category I and 995 as national category II. Moreover, the protection category of some species has also been revised (3 species downgraded to national category I, 66 species upgraded to national category II, and 413 species in total maintaining the same category). However, despite these positive changes, according to China’s Red List of Biodiversity: Vertebrates (2021 Edition) more than half of the endangered species in China are still not covered in the new version of the List of State Key Protected Wild Animals.

Conclusion: To promote the comprehensive and effective protection of endangered species in China, it is recommended that future adjustments to the List of State Key Protected Wild Animals give comprehensive attention to the endangered species on the list. If species in the Critically Endangered and Endangered categories are listed as national category I key protected wildlife, the existing 164 national category II key protected wildlife should be upgraded to national category I key protected wildlife, and 162 new wildlife species should be added to national category I key protected wildlife. Additionally, if species in the Vulnerable category are listed as national category II key protected wildlife, 340 new national category II key protected wildlife should be added. A comprehensive database of the List of State Key Protected Wild Animals can be established to achieve standardized and dynamic management of the list.

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Competition and coexistence between tigers and leopards in Asia
Zhilin Li, Tianming Wang
Biodiv Sci    2022, 30 (9): 22271.   DOI: 10.17520/biods.2022271
Accepted: 21 September 2022

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Background & Aim: As apex carnivores, tigers (Panthera tigris) and leopards (P. pardus) play critical roles in maintaining the structural and functional stability of Asian forest ecosystems. The populations and ranges of these two felids have declined due to human disturbance. To mitigate anthropogenic threats to endangered species in these ecosystems, it is essential that we understand how tigers and leopards interact. Although competition between tigers and leopards has been studied for several decades, most studies have taken place in the famous reserves like Nagarahole National Park and Chitwan National Park in South Asia, so it is unknown how their interactions differ elsewhere in their overlapping range. Here, we review 36 previous papers on competitive interactions between the two big cats from 1976 to 2021. We summarize the nature of both interference and exploitation competition between tigers and leopards in their current overlapping range, as well as how prey and human disturbance shapes this competition.
Review Results: We found that the most important factors affecting tiger-leopard competition and coexistence included species richness at various size classes of prey and also the spatial distribution of human disturbance. Local habitat, prey composition, and disturbance factors affect tiger-leopard interactions by shaping the trade-off between ecological opportunities (e.g., easy prey) and the risk of escalating conflict with humans and other competitors across spatial, temporal, and dietary niches.
Perspectives: There is currently a significant regional bias in the study of tiger-leopard competition and coexistence, with most research focusing on the overlapping range in South Asia and neglecting these in Northeast and Southeast Asia. To more fully understand how tigers and leopards interact, future research should occur longitudinally throughout their shared range, with a focus on multiple ecological niches and fine spatial scales. Research on the biotic and abiotic factors affecting tiger-leopard competition should aim to identify their ecological thresholds and the regulation mechanisms by which these factors affect the intensity and types of competition.

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A checklist of vascular plants in Fujian Province, China
Chang An, Yixue Zhuang, Ping Zheng, Yanxiang Lin, Chengzi Yang, Yuan Qin
Biodiv Sci    2023, 31 (6): 22537.   DOI: 10.17520/biods.2022537
Accepted: 28 April 2023

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Aims: To comprehensively understand the current status of vascular plants and provide background materials for the conservation of plant diversity in Fujian Province, the list of vascular plants in the region needs to be updated. This study revises and updates the species list of vascular plants in Fujian Province in the post-flora era.

Methods: Based on Flora of Fujian, we refered to related literature, examined herbarium specimens, consulted relevant lists and databases, and incorporated the results of field investigations conducted by the authors and other front-line peers. The checklist of vascular plants in Fujian Province was sorted according to the latest classification systems of vascular plants (APG IV system, Yang system, and PPG I system). The list included the family and genus information, Chinese name and Latin name, and the county and city distribution information data sources for each species.

Results: In total, there were 5,587 species belonging to 256 families and 1,807 genera of wild, naturalized, and cultivated vascular plants in Fujian Province (wild: 231 families, 1,402 genera, and 4,550 species). This included 414 species of lycophytes and ferns belonging to 102 genera and 32 families, 76 species of gymnosperms belonging to 38 genera and 10 families, and 5,097 species of angiosperms belonging to 1,667 genera and 214 families, respectively. Compared with Flora of Fujian, 8 families, 216 genera, and 1,107 species were newly added. The five largest families of lycophytes and ferns species were Dryopteridaceae (67), Polypodiaceae (51), Pteridaceae (51), Thelypteridaceae (42), and Athyriaceae (38). Among the gymnosperms, the families and the genera with the largest number of species were Cupressaceae (15 genera, 25 species) and Pinus (14 species), respectively. The top 10 largest families of angiosperms are Poaceae (452), Leguminosae (305), Compositae (279), Orchidaceae (244), Cyperaceae (225), Rosaceae (198), Labiata (188), Rubiaceae (126), Malvaceae (85), and Lauraceae (80), with a total of 2,180 species, accounting for 39.0% of the total number of vascular plant species in Fujian Province. The top five largest genera were Carex (94), Rubus (58), Ilex (54), Phyllostachys (38) and Persicaria (36).

Conclusions: This work improves the species distribution profile and specimen information, thus providing basic information for the survey, assessment, and conservation of plant diversity in Fujian Province. Additionally, this study can be used to further develop botany-related disciplines, and the revision of Flora of Fujian.

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Research progress on the biodiversity and ecological function of soil protists
Baomin Yao, Qing Zeng, Limei Zhang
Biodiv Sci    2022, 30 (12): 22353.   DOI: 10.17520/biods.2022353
Accepted: 11 November 2022

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Background & Aims: Protists are widely distributed in soil and throughout different habitats with high abundance and diversity. They play important roles in nutrient cycling and the energy flow of ecosystems, as well as maintaining soil and plant health. Compared with other microorganisms and fauna in soil, protists have received little attention until recently, and the study on their classification and molecular detection are largely challenged due to their complex taxonomy systems and ecological types.
Progresses: This review systematically summarized and sorted out previous research on soil protists. The research progress on the taxonomic systems of protists, properties of different trophic functional groups, the distribution pattern, and the influencing factors of soil protists were summarized. Then the ecological functions of protistan communities in participating in soil nutrient cycling and maintaining soil health were further highlighted. The main factors that drive the construction of protistan community was clarified, and the prospect and application prospect were further put forward.
Prospects: The future perspectives and research efforts towards taxonomic classification, biodiversity, ecological function, and applications of soil protists need to be explored.

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Geographical distribution of freshwater and estuarial fish archaeological remains since the Neolithic Age in China and its biogeographical implications
Weinuo Liang, Liang Hu
Biodiv Sci    2022, 30 (8): 21471.   DOI: 10.17520/biods.2021471
Accepted: 20 May 2022

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Aims: Freshwater and estuarial fish remains recovered from archaeological sites are critical data for exploring the historical distribution of extant fish species. In this paper, records of freshwater and estuarial fish archaeological remains in China from the Neolithic Age to the Ming Dynasty will be studied to reveal the historical distribution of relevant extant species.

Methods: We conducted a taxon-distribution matrix based on freshwater and estuarial fish archaeological remains from 101 sites (or site clusters) in China. The historical distributions of the identified fish species were reconstructed and compared with their extant distributions. The reasons for the changes in the distribution of species historically compared to present distributions were discussed.

Results: A total of 72 taxa of freshwater and estuarial fish remains from 8 orders and 12 families were recorded, of which Cypriniformes was the largest order with 43 taxa. Forty-two taxa had been identified as extant species, of which Cyprinus carpio and Mylopharyngodon piceus were the most frequently recorded species (both were recorded in 46 sites). Of these 101 studied sites, 68 sites belong to the Neolithic Age and a total of 60 fish taxa were recorded. The Yangtze River Basin had the largest number of identified taxa (55), followed by the Huai River Basin (24), and the Amur River Basin (22). In contrast, there was only one taxon recorded in the South Rivers Basin, the Southwest Rivers Basin and the Taiwan Island Rivers Basin. The following eight species had been recorded at least once outside their extant distribution range: Ctenopharyngodon idella, Mylopharyngodon piceus, Megalobrama amblycephala, Carassioides acuminatus, Cyprinus longzhouensis, Aristichthys nobilis, Monopterus albus, and Lateolabrax japonicas. Except for the first two species, the remaining species had been recorded at least once farther north of their extant distribution range.

Conclusions: The geographical patterns of freshwater and estuarial fish fauna since the Neolithic Age in China were largely consistent with the current patterns. However, a few species displayed a historical distribution pattern wider than that of their present distribution range. This may be because the paleo-climate where these species unearthed was warmer than today, or because the subsequent changes in climate or water system have narrowed the distribution range of those fish species.

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Kunming-Montreal Global Biodiversity Framework: An important global agenda for biodiversity conservation
Keping Ma
Biodiv Sci    2023, 31 (4): 23133.   DOI: 10.17520/biods.2023133
Accepted: 28 April 2023

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Complex relationships and feedback mechanisms between climate change and biodiversity
Xin Jing, Shengjing Jiang, Huiying Liu, Yu Li, Jin-Sheng He
Biodiv Sci    2022, 30 (10): 22462.   DOI: 10.17520/biods.2022462
Accepted: 06 October 2022

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Background and Aims: Climate change and biodiversity loss are two major changes that human society is experiencing. Climate change affects all aspects of biodiversity and is a major driver of biodiversity loss; in turn, biodiversity loss exacerbates climate change. Therefore, halting or even reversing climate change and biodiversity loss is a global issue that needs to be addressed by human society. However, we lack a clear understanding of the complex relationships and feedback mechanisms between climate change and biodiversity. Here, we summarize the research on climate and biodiversity change in the last decade by focusing on studies investigating the responses and feedback of biodiversity to climate change at different organizational levels, spatial scales, and diversity dimensions.
Progress: Our results showed that most studies focus on the direct impacts of climate change on biodiversity, involving different organizational levels and dimensions and trophic levels of biodiversity. Studies on the indirect impacts of climate change were rare, and we suggested that mechanistic studies need to be strengthened. The mechanisms and quantification of the effects of biodiversity on ecosystem multifunctionality were challenges for current research. There was no consensus on how biodiversity contributes to ecosystem response to climate change; the positive and negative feedback effects of biodiversity in the context of climate change were a blind spot in domestic and international research.
Prospects: The future direction and key scientific issues that need to be solved in the field of climate change and biodiversity change are numerous. We identify 4 main areas of future research: understanding (1) the impacts of multi-factor climate change on biodiversity, (2) how mitigation and adaptation measures to climate change can benefit biodiversity conservation, (3) how the theory of biodiversity and ecosystem function can be applied to the real-world ecosystems and (4) what is the contribution of biodiversity conservation to carbon neutrality goals.

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Bio-inventory in China: Progress and perspectives
Jianping Jiang, Cheng Du, Bing Liu, Ke Wang, Lei Cai, Qiang Li, Xiaolei Huang
Biodiv Sci    2022, 30 (10): 22531.   DOI: 10.17520/biods.2022531
Accepted: 08 November 2022

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Background: Bio-inventory practices, including discovering and describing species, establishing reliable biological classification systems, compiling authoritative and timely species catalogues, and digitizing and sharing biodiversity information, are of great significance for biodiversity studies, biodiversity resource management, science-based policy-making, and social and economic development.
Review results: In this article, based on a comprehensive review on literature and public databases, we summarize the progress of bio-inventory work on vertebrates, insects and other invertebrates, plants, and fungi in China in recent years. We also share perspectives for future bio-inventory work. Available data show that in China there are at least 698 recorded mammal species, 1,450 bird species, 586 reptile species, 611 amphibian species, 1,591 freshwater fish species, 38,493 higher plant species (including 35,379 vascular plant species), and about 27,900 fungi species, but there are no species catalogues for all Chinese insects and other invertebrates. In the last decade, 5 new families, 86 new genera, 2,090 new species and 374 new records of vascular plants, and 4,679 new fungi species belonging to 36 classes, 140 orders, 438 families and 1,372 genera, have been reported in China.
Perspectives: Bio-inventory is growing in importance at the global and regional levels, and encouraging progress has been made in this field in China. However, new species descriptions for invertebrates and fungi, catalogues of many organismal groups, and digitization and integration of biodiversity information are especially needed in future research.

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Application, progress, and future perspective of passive acoustic monitoring in terrestrial mammal research
Haigang Ma, Penglai Fan
Biodiv Sci    2023, 31 (1): 22374.   DOI: 10.17520/biods.2022374
Accepted: 02 December 2022

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Background & Aims: Passive acoustic monitoring (PAM) is an observational method that collects acoustic signals of wildlife and the surrounding environment using automatic sound recorders. PAM itself is a multidisciplinary technique, integrating biology, ecology, acoustics, and computer science, and was developed in the 1990s first to study bats and primates. Since then, PAM has been utilized in a variety of research contexts to study animal behavior, ecology, and conservation biology. However, a systematic review of the progress of the field is lacking.

Progress: Here, we review how PAM has been used to monitor terrestrial mammal activity patterns, habitat use, species distribution, population size and density, biodiversity, and human influence. We also identify factors which prevent its wider application, such as the complexity of storing and managing acoustic data, limitations of acoustic indices, challenges associated with automated identification of species or individuals, and the overall cost of equipment. As a consequence, we observe limited use of PAM in terrestrial mammal research, especially in China.

Perspective: Finally, we discuss potential novel applications of PAM to study terrestrial mammals. We highlight the importance of establishing and improving standardized PAM networks and data management platforms, developing citizen science programs, encouraging participation of more scientific institutions, and expanding the presence of acoustic monitors particularly throughout protected areas. PAM is an indispensable technique which can further support efforts to conserve biodiversity and increase ecological consciousness in China.

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Progress of marine biodiversity studies in China seas in the past decade
Jun Sun, Yuyao Song, Yifeng Shi, Jian Zhai, Wenzhuo Yan
Biodiv Sci    2022, 30 (10): 22526.   DOI: 10.17520/biods.2022526
Accepted: 08 November 2022

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Background: China possess a high marine biodiversity. Under global climate changes, studies on marine biodiversity changes in Chinese waters grow rapidly. Over the last decade, Chinese scientists made great progress on studies of marine biodiversity in China.
Review Results: In this paper we summarized the significant progresses made on studies of marine biodiversity in China at the genetic, species, and ecosystem levels over the last decade and conducted a bibliometric analysis by using the VOSviewer software. The results showed that scientists in China had found new species through use of more accurate and rapid classification methods or tools, like molecular detections, flow cytometry, and other new techniques. Within the framework of multidisciplinary integration, biodiversity and the environmental was considered holistically, which will provide more accurate data for the restoration of marine ecosystems in future. At present, the study of Chinese scientists on marine biodiversity is still on the step of catching up the cutting edge, while we already made a obviously progress in some new hotspots, such as deep sea, seamounts, and some extreme environmental marine biodiversity studies. The discovery of new taxon had constantly updated the original knowledges, and made a great progress in the monitoring of typical marine ecosystems and the remediation of some invasive species. Due to the high biodiversity and complete monitoring data in China’s offshore waters, it is necessary to carry out more comprehensive marine ecological models to analyze and study these integrated spatial-temporal data. By exploring the biodiversity changes and their interaction under the multiple stresses, this provides the helps for optimizing the conservation and management of marine biodiversity in China sea waters.

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Progress and application of IUCN Red List of Threatened Species
Yan Xie
Biodiv Sci    2022, 30 (10): 22445.   DOI: 10.17520/biods.2022445
Accepted: 01 November 2022

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Aim: The IUCN Red List of Threatened Species (IUCN Red List) has become the world’s most comprehensive information source on the global extinction risk status of animal, fungus and plant species, a critical indicator of the health of biodiversity and a powerful tool to catalyse action for biodiversity conservation and policy decision. The purpose of this paper is to comprehensively introduce the development and application of the IUCN Red List, to promote Chinese species assessment and wide application in China.
Review Results: (1) The history of the IUCN Red List. During the phase of Red Data Book of Endangered Species, it was largely dependent on individual experts’ personal judgement to make decisions on threatened categories. From 1991, the criteria gradually became quantified and unified for all taxon groups. Since IUCN Red List Categories and Criteria: Version 3.1 published in 2001, the categories and criteria has been kept stable and become widely applied around the world. Until now, more than 140,000 species (among them, 10,846 species are distributed in China) have been evaluated at the global level, over 55,000 species evaluated at China country level, and over 100 countries/regions have developed their regional/national Red List.
(2) Global criteria and assessment. The category system covers all species in the world, among which, three categories regarded as “threatened”, i.e., Critical Endangered (CR), Endangered (EN) or Vulnerable (VU), must be evaluated by the five set of criteria. The current global level assessment work is mainly completed by the IUCN Species Survival Committee (SSC) and its partners, and there are strict requirements for the assessment.
(3) National and regional criteria and applications. Compared with the global application, the category and criteria are applicable to regional applications, only the assessment results should be adjusted if the species population communicates with neighboring regions (or countries).
(4) Assessment status of China Red List. The first comprehensive assessment began in 2000 for 10,211 species, and the China Red List of Species was published in 2004. The second comprehensive assessment began in 2008, and the official release began in 2013. By the end of 2021, over 55,000 species assessments were completed, including all terrestrial vertebrates and higher plants, some marine fishes, invertebrates, and large fungi. Yunnan Province has issued the first provincial red list.
(5) Application of the Red List. The application of Red List continues to grow rapidly, both globally and in China. The Red List Index is used to measure biodiversity changes over time. The Red List is also applied for decision-making on species conservation priorities and key priority conservation areas, implementation of international conventions, formulating (revising) key protected species list of countries (regions) and protected area management and effective allocation of resources and public awareness raising.
(6) Major discussions on Red List application. Since the publication of the Categories and Criteria, major discussions are on the methodology of obtaining data. While a few experts believe that some criteria are flawed and need to be improved, and some others calls for maintaining a long-term relative stable of criteria for comparisons over time.
(7) Recommendations on sustainable mechanism and application in China. We recommend to establish China Red List Committee, develop a professional website for China Red List, build capacity of Red List assessors, establish mechanism for receiving and reviewing assessment reports, and strengthen international cooperation to promote application and development of global and China Red List.

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Application of genomics technology in biodiversity conservation research
Shanlin Liu, Na Qiu, Shuyi Zhang, Zhunan Zhao, Xin Zhou
Biodiv Sci    2022, 30 (10): 22441.   DOI: 10.17520/biods.2022441
Accepted: 01 November 2022

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Background: Research techniques in molecular biology, cell biology, microbiology and genetics have been accelerated by rapid development of modern genomic technologies. These advances have rapidly evolved the field of biodiversity research, once a branch of natural history focusing on morphology, into an integrated life science. Modern biodiversity studies can now investigate and link element of ecological systems, the species within them, and their genetic diversity. DNA related technologies, among other omics techniques, have continued to develop and launch new sequencing platforms, leading to a reduction of DNA sequencing costs that has already outstripped Moore’s Law, which also facilitates a series of breakthroughs in the research fields of biodiversity.
Prospects: Here, we introduce emerging trends in DNA-based omics techniques applied in biodiversity research, including species-level genomics as well as genetic diversity and community-levels species diversity. The former includes genomes obtained based on single individuals and genetic diversity of focal populations in both spatial and temporal dimensions, while the latter includes molecular identification approaches, such as metabarcoding, eDNA, iDNA etc. These new methods can be applied in biodiversity estimation for various communities, as well as in monitoring and conservation of flagship species and interspecific interactions.

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Biodiversity conservation research in protected areas: A review
Wei Wang, Yue Zhou, Yu Tian, Junsheng Li
Biodiv Sci    2022, 30 (10): 22459.   DOI: 10.17520/biods.2022459
Accepted: 08 November 2022

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Background & Aims: The establishment of protected areas (PAs) is one of the most important measures to protect biodiversity. Generally speaking, recent studies on biodiversity conservation in PAs have focused on key ecosystems and rare and endangered species, and explored the status and changes of these conservation objects. There have been a series of scientific debates on issues such as the number and size of PAs, how many important ecosystems and species can be protected in PAs, and whether PAs effectively protect biodiversity. However, there are still few systematic reviews of the above-mentioned research issues; thus, this paper systematically covers research progress in these fields in recent years, from the spatial layout of PAs and their relationship to the distribution of biodiversity, to biodiversity change and the conservation-effectiveness of PAs.
Advances: Studies on the spatial layout of PAs and biodiversity distribution generally focused the status of biodiversity, mainly investigating topics we label as “how much is enough?”, “representativeness and conservation gaps”, and “where to protect?”. Based on the analysis of biodiversity changes in PAs, scholars from different countries have conducted substantial research on conservation-effectiveness assessment at the global, national, and individual-PA scale, and gradually developed a method of pairwise analysis inside and outside of PAs to improve the accuracy of assessments.
Prospects: We conclude by proposing a potential future studies on biodiversity conservation in PAs, which mainly include: (1) Integrating studies on conservation status and biodiversity change in PAs; (2) Studying the optimal spatial layout of PAs under multi objectives; (3) Strengthening the identification, investigation, and monitoring of major conservation objects in PAs; (4) Improving the quality and connectivity of PAs; and (5) Exploring the relationship between management measures and conservation effectiveness of PAs. We hope this paper can provide a reference for the formulation and implementation of the Post-2020 Global Biodiversity Framework, especially in the construction and optimization of PAs in the next 10 years.

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An updated species checklist of amphibians and reptiles in Fujian Province, China
Chunpeng Guo, Maojun Zhong, Xiaoyi Wang, Shengnan Yang, Ke Tang, Lele Jia, Chunlan Zhang, Junhua Hu
Biodiv Sci    2022, 30 (8): 22090.   DOI: 10.17520/biods.2022090
Accepted: 02 July 2022

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Aim: We aim to provide an updated species checklist for extant, native amphibians and reptiles of Fujian Province, China, to meet the conservation needs of the province by integrating previous modifications in herpetological taxonomy and nomenclature, as well as incorporating discoveries of newly recorded or resurrected species.

Methods: The updated species checklist was revised based on the results of 125 sample grids uniformly distributed across Fujian, and an extensive review of the literature up to December 2021. We incorporated any newly-recorded or resurrected species from the literature, excluding historical records that were misidentified or otherwise questioned, and updating scientific names and Chinese common names.

Results: Compared to previous checklists, we added 22 species, excluded 8 previously recorded species, and renamed 64 species. The updated species checklist contained 55 amphibian species, belonging to 29 genera across 9 families and 2 orders, and 126 reptile species, belonging to 72 genera in 25 families and 2 orders. Among them, 4 amphibians and 2 reptiles were endemic to Fujian. Additionally, Fujian represented the type locality of 24 amphibians and 18 reptiles. Six reptiles were listed as national first-class protected wild animals in China. Five amphibians and 25 reptiles were listed as national second-class protected wild animals. Ten amphibians were assessed as threatened species by China’s Red List of Biodiversity, with two Critically Endangered, one Endangered and seven Vulnerable (accounting for 3.64%, 1.82% and 12.73% of the amphibian species in Fujian, respectively); 41 reptiles were assessed as threatened species, with 11 Critically Endangered, 15 Endangered and 15 Vulnerable (accounting for 8.73%, 11.90% and 11.90% of the reptile species in Fujian, respectively).

Conclusions: By validating each species and assessing their threatened and protected status, this study provides up-to-date information for future biodiversity research and conservation in Fujian Province.

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A practical guide for estimating the density of unmarked populations using camera traps
Zhenzhen Li, Mengtian Du, Yuanxin Zhu, Dawei Wang, Zhilin Li, Tianming Wang
Biodiv Sci    2023, 31 (3): 22422.   DOI: 10.17520/biods.2022422
Accepted: 20 March 2023

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Background & Aim: Estimating population density is essential for wildlife management and conservation, but it is challenging to achieve. Camera trapping is a pervasive method used in mammal surveys and a cost-effective way to overcome this challenge, for which several methods have been described to estimate population density when individuals are indiscernible (i.e. unmarked populations). However, there are few examples of their use in China. We aim to provide a practical guide for conducting camera trap surveys to estimate the density of mammals applying the random encounter model (REM), random encounter and staying time (REST) model, time in front of the camera (TIFC) model and the camera trap distance sampling (CTDS).

Review Results: First, we provide a brief explanation about the structure and assumptions of the REM, REST, TIFC and CTDS models. Next, we describe essential steps in planning a field survey: determination of objectives, design of camera placement, and the layout of the camera station. We then develop detail-oriented instruction for conducting a field survey and analyzing the obtained visual data. Finally, for each analytical approach, we compiled the data requirements, advantages, and disadvantages of each to help practitioners navigate the landscape of abundance estimation methods.

Perspectives: Although multiple methods exist, no one method is optimal for every camera-trap data scenario. While there has been rapid improvement of camera traps in recent decades throughout China, we encourage researchers to evaluate the life history of the focal taxa, carefully define the area of the sampling frame, and enhance the use of camera trapping for estimating densities of unmarked populations.

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The impact of anthropogenic noise, artificial light at night and road kills on amphibians
Yixin Jiang, Yingying Shi, Shuo Gao, Supen Wang
Biodiv Sci    2023, 31 (3): 22427.   DOI: 10.17520/biods.2022427
Accepted: 01 January 2023

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Background & Aim: Global biodiversity decline is a major ecological problem around the world today. As an important indicator for measuring the environment, amphibians have received more and more attention from researchers in recent years. In this paper, we focus on amphibians which are the most threatened species of vertebrate to analyze the existing problems and suggest the corresponding solutions.

Method: Firstly, we analyze the effects of three most prominent factors in human activities, i.e., anthropogenic noise, artificial light at night and road kills on amphibians reproduction, population growth rate, physiology, and behavior by retrieving existing literature from 2003 to 2021, and extracting and integrating key words. Secondly, the mitigation measures regarding anthropogenic noise, artificial light at night and road kills are summarized and suggestions for improvement are made.

Review Results: Amphibian calling behavior was altered by anthropogenic noise, showing variations in call rate, dominant frequency, and call duration. It is yet unclear how different amphibians calling respond to anthropogenic noise differently and whether call variations are advantageous to the amphibians’ long-term growth. By obscuring the perception of male acoustic signals by females and impacting sperm count and sperm viability in males, anthropogenic noise can also affect the reproductive behavior of amphibians. Amphibian growth rates and behavioral activity time were slowed down by artificial light at night. In addition, artificial light at night can change corticosterone levels in amphibians and hence have an impact on their physiology. Amphibian population size was directly impacted by road kills. This study makes recommendations for improvement in light of the aforementioned detrimental effects, including bolstering the road infrastructure, constructing noise barriers to muffle noise, reducing light intensity in dense amphibian areas, building amphibian corridors, etc.

Perspective: Specific conservation strategies that seek to improve protection measures, planning management and monitoring of amphibian population dynamics should be implemented in order to reduce the impact of human activities on this group of vertebrates.

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Restoring tiger population in Asia: Challenges, opportunities, and future prospects
Yixiao Zhu, Dawei Wang, Zhilin Li, Jiawei Feng, Tianming Wang
Biodiv Sci    2022, 30 (9): 22421.   DOI: 10.17520/biods.2022421
Accepted: 28 September 2022

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Background & Aim: The tiger (Panthera tigris) may be the most charismatic and well-recognized flagship species in the world. As an ecological umbrella species and apex predator, the species symbolizes the well-being of the forest ecosystem. Tigers have lost 93% of their historical range and are experiencing rapid population declines. To enact effective conservation, it is important to understand the ecology and natural history of this globally endangered species. In this paper, we review previous articles related to tiger ecology and conservation research, summarizing the population dynamics and major conservation challenges in Asia in order to outline the actions required to conserve tigers and their ecosystems.
Review Results: We found that, while overall research about tigers was increasing, efforts focused primarily on the subspecies with the most remaining range (e.g., P. t. tigris and P. t. altaica) and neglected subspecies requiring urgent attention. Tiger population has increased over the past decade, with estimates increasing from 3,200 to 4,500 during 2010-2021. However, stressors such as habitat fragmentation and loss, hunting of tigers and their prey, illegal trade, and human-tiger conflicts have isolated wild tigers in small populations across their ancestral range. Isolation, small territories, and disease further threaten the extant subspecies.
Perspectives: We suggest that establishing a long-term monitoring network is critical for the conservation of tigers. To achieve the goal of a large tiger meta-population across Asia we recommend extensive land use planning, restoring native ungulates, reducing anthropogenic disturbances, improving connectivity of tiger habitats, controlling disease, and extensive cooperation across territories. In landscapes lacking breeding females, we also recommend reintroduction of tigers as a means of increasing recovery speeds.

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A review of recent advances in the study of geographical distribution and ecological functions of soil fauna diversity
Shenglei Fu, Manqiang Liu, Weixin Zhang, Yuanhu Shao
Biodiv Sci    2022, 30 (10): 22435.   DOI: 10.17520/biods.2022435
Accepted: 22 October 2022

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Aims: Understanding the distribution and drivers of soil fauna diversity as well as their ecological functions have become areas of cutting-edge research in modern geoscience and ecology. Here, we briefly introduce the latest progress in this field, discuss present research limitations and uncertainties, and offer promising research directions in future studies of soil fauna.
Progresses: Many studies have described the global distribution of representative soil fauna taxa diversity and abundance, such as that of earthworms. Research on soil fauna distribution and ecological function in China has also flourished with many large scale, intensive sampling studies in the past 10 years (especially for earthworms and nematodes). Based on a literature review, we observed that there were two main distribution patterns of soil fauna diversity across latitudes. Diversity was found to be highest either at low-latitude tropical zones or at mid-latitude temperate zones; while changes in soil fauna abundance and diversity can be consistent, non-related, totally different, and even opposite. Precipitation, plant productivity and soil organic matter were the critical drivers of soil fauna distribution, but their influences varied with soil faunal taxon. The major ecological functions of soil fauna include improving soil physical structure, facilitating nutrient cycling and organic carbon stabilization, and enhancing plant health. The concept of multifunctionality of soil fauna has been proposed by soil ecologist to fully measure these multi-dimensional ecological functions, but it still faces many challenges.
Prospect: The drivers of soil fauna distribution are not simply predicted from the variation pattern of soil faunal community characteristics across latitudes, longitudes or altitudes. Rather, we suggest that drivers of the soil fauna distribution should be explored within a multi-dimensional spatial-temporal framework based on a combination of geological and ecological history as well as “latitude & longitude-altitude-distance to coast”. The distribution pattern of soil fauna may critically influence their potential ecological functions; however, the prediction and simulation of soil fauna distribution mainly relied on data-driven empirical models, and the results were not conclusive. Thus, the application of theories such as metabolic ecology deserves more attention. Research on the relationship between soil fauna diversity and function is in the preliminary stages; focusing on functional diversity and exploring the redundancy mechanism of taxonomic diversity could link soil fauna diversity and function. We propose to understand soil fauna diversity and function under specific condition of space and time, as well as the context of the whole soil food web and its connection with plants. There are two promising directions for further research: (1) illustrating the large uncertainties that human activity and climate change may bring to soil fauna studies; (2) developing precision manipulation approaches of soil fauna community to ultimately link soil fauna multifunctionality with human well-being.

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Analysis of the main elements and implications of the Kunming-Montreal Global Biodiversity Framework
Jing Xu, Jinzhou Wang
Biodiv Sci    2023, 31 (4): 23020.   DOI: 10.17520/biods.2023020
Accepted: 27 March 2023

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Background & Aim: The Conference of the Parties to the Convention on Biological Diversity adopted a new global biodiversity strategy—the Kunming-Montreal Global Biodiversity Framework (the Kunming-Montreal GBF). The following five package outcomes were also adopted: Monitoring Framework; Mechanisms for Planning, Monitoring, Reporting and Review; Resource Mobilization; Capacity-Building and Development, Scientific and Technological Cooperation; and Genetic Resources Digital Sequence Information. Parties to the Convention need to implement the Kunming-Montreal GBF and its package of outcomes domestically. In order to facilitate China’s implementation of the Kunming-Montreal GBF, the paper briefly reviews the development process and the main contents of the Kunming-Montreal GBF and its package of outcomes.

Review Results: Comments on the global and national impact of the Kunming-Montreal GBF are given. In order to implement the Kunming-Montreal GBF, developed countries should enhance biodiversity financing and ensure the level of international funds related to biodiversity flowing to developing countries. Developing countries should revise or update national biodiversity strategies and action plans, monitor and report national implementation progress by using indicators, and accept review. China should host the inter-sessional process of the CBD and facilitate the implementation of the package deals of the Kunming-Montreal GBF.

Recommendations:Recommendations on how to implement the Kunming-Montreal GBF in China are provided: updating and revising the national biodiversity strategic action plan, formulating laws and policies to promote biodiversity mainstreaming, strengthening monitoring and evaluation of national implementation progress, promoting the development of biodiversity financing tools, and establishing partnerships with broad participation by the entire society.

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Exploring the application of acoustic indices in the assessment of bird diversity in urban forests
Qi Bian, Cheng Wang, He Cheng, Dan Han, Yilin Zhao, Luqin Yin
Biodiv Sci    2023, 31 (1): 22080.   DOI: 10.17520/biods.2022080
Accepted: 23 June 2022

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Aims: Calling is an important way for birds to communicate and transmit information to each other. This provides a unique opportunity to assess bird diversity through acoustic monitoring. The use of acoustic indices for the rapid assessment of biodiversity is an emerging survey method, but the complex sonic environment in urban forests may lead to bias. The feasibility of using acoustic indices to assess bird diversity in urban forests still needs to be further explored.

Methods: To understand the effectiveness of acoustic indices in urban forests, we set up 50 matrix survey sample sites in Beijing Eastern Suburb Forest Park. Bird sample point observations and simultaneous acoustic data collection were conducted monthly from April to June 2021. In order to verify the effectiveness of acoustic monitoring, we compared the results of the two methods. Spearman correlation analysis and generalized linear mixed models were used to assess the relationship between six commonly used acoustic indices and bird richness and abundance. The performance of each acoustic index was subsequently measured.

Results: (1) A total of 35 species, comprising 10 orders and 23 families, were recorded in this experiment. Although the total number of species identified through acoustic monitoring was equal to bird observations, there were discrepancies between which specific bird species were observed. (2) The correlation between acoustic indices and bird richness and abundance varied significantly in different months. The acoustic complexity index (ACI) and normalized difference sound index (NDSI) outperformed others were key variables for assessing bird diversity. (3) Acoustic indices had higher predictive power for bird abundance (R2m = 0.32, R2c = 0.80) than richness (R2m = 0.12, R2c = 0.18).

Conclusion: Acoustic monitoring provides a promising tool for urban biodiversity assessment, but there are still many areas that need to be explored. With the gradual improvement of methods and technology, acoustic monitoring has great potential in the tracking and conservation management of urban biodiversity.

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