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Species diversity and geographical distribution of marine benthic shell-bearing mollusks around Donghai Island and Naozhou Island, Guangdong Province
Qiyu Kuang, Liang Hu
Biodiv Sci    2024, 32 (5): 24065.   DOI: 10.17520/biods.2024065
Accepted: 28 April 2024

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Aims: Marine benthic shell-bearing mollusks are one of the most important components of marine benthic fauna and one of the key groups influencing marine ecosystem and sediments. The west coast of Guangdong is located in the Northern South China Sea (NSCS) and is rich in marine benthic shell fauna. However, it is also the area with a great lack of surveys of the marine benthic shell fauna, which seriously hinders the development of geographical divisions of offshore benthic fauna. Donghai Island and Naozhou Island have been well studied in terms of marine benthic mollusks. They are also the key areas to reveal the geographical pattern of benthic animals in the NSCS. Here we aim to report on the species diversity and geographical distribution of benthic mollusks found on the coast of the two islands and adjacent waters.

Methods: Based on historical records from previous studies, historical specimens preserved in the collection of the South China Sea Institute of Oceanology, and more than 2,600 specimens collected in 2021-2023 by the School of Geography and Planning, Sun Yat-sen University, an up-to-date checklist of known marine benthic shell-bearing mollusks living around Donghai Island and Naozhou Island was compiled. The geographical distribution patterns of all species were analysed based on their northern limits in the East Asian continental shelf.

Results: A total of 207 species from 144 genera and 73 families were identified in the field collections. Thirty-eight of these were new to the area. So far, a total of 602 benthic mollusks from 330 genera and 115 families have been recorded in the waters around Donghai Island and Naozhou Island, making this area the most species-rich area on the continental coast of the NSCS in terms of marine benthic shell-bearing mollusks. Of the 602 benthic mollusk species, 26.2% were tropical warm-water species, 49.3% were tropical-subtropical warm-water species and 24.4% were eurythermal species. The number of species that were also recorded in the nearshore waters of Hainan, Beibu Gulf and Eastern Guangdong accounted for 89.0%, 80.2% and 80.2% of the total species, respectively.

Conclusion: The results show that the coast of Donghai Island, Naozhou Island and the adjacent waters are rich in marine benthic shell-bearing mollusks. The shell fauna here has typical tropical characteristics and is most closely related to that of Hainan Island. It is recommended that these two areas could be placed in the same ecoregion with regard to the bioregionalization of the coastal and shelf benthic fauna. The present work enriches the benthic shell-bearing mollusks in the sea east of Leizhou Peninsula and provides up-to-date data to support the bioregionalization of benthic fauna in the NSCS.

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Advances of marine biogeography in China: Species distribution model and its applications
Yunwei Dong, Menghuan Bao, Jiao Cheng, Yiyong Chen, Jianguo Du, Yangchun Gao, Lisha Hu, Xincheng Li, Chunlong Liu, Geng Qin, Jin Sun, Xin Wang, Guang Yang, Chongliang Zhang, Xiong Zhang, Yuyang Zhang, Zhixin Zhang, Aibin Zhan, Qiang He, Jun Sun, Bin Chen, Zhongli Sha, Qiang Lin
Biodiv Sci    2024, 32 (5): 23453.   DOI: 10.17520/biods.2023453
Accepted: 02 March 2024

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Background & Aim: Marine biogeography is a subject investigating the spatiotemporal distributions of marine organisms and the processes and drivers of changes in species distributions. Research in marine biogeography is promising for the conservation of marine biodiversity and the stability of ecosystem functioning and crucial for the sustainability of utilizing marine resources. Species distribution models (SDMs) are an important tool for assessing and predicting the biogeographical changes in marine species distributions.

Progresses: This review consists of three main parts: (1) the development process and current status of marine biogeography studies in China; (2) the commonly used approaches to answer the questions related to marine biogeography with a special focus on SDMs; (3) the research trends and hotspots of marine biogeography studies in China, mainly concerning the shifts in species distribution under global changes, phylogeography of marine species, biological invasion, population connectivity, marine conservation planning, marine ecological restoration and recovery, adaptation of marine species to extreme environments, as well as management of marine fisheries and mariculture planning.

Prospects: In this review, we further outlined the prospects for the future development of marine biogeography and emphasized the importance of optimizing SDMs. We also called for developing comprehensive databases of marine environments and organisms to strengthen the integration of marine biogeography with other disciplines. We hope this review will provide useful insights for the studies of marine biogeography in China.

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Cited: CSCD(1)
  
A dataset on inventory and geographical distributions of vascular plants in Shanxi, China
Shuai Li, Weihua Liu, Yudan Xu, Xiaobo Tian, Houjuan Song, Xiaoting Yue, Lingling Wu, Qing Zhang, Tieliang Shanguan
Biodiv Sci    2025, 33 (7): 24317.   DOI: 10.17520/biods.2024317
Accepted: 30 June 2025

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Clarifying the diversity and distribution of wild vascular plants in Shanxi Province is crucial for effective plant diversity conservation efforts in the region. Flora of Shanxi, the most authoritative record of plant cataloging and distribution in Shanxi, has been available for over 20 years. During this period, the plant classification system has evolved significantly, and many new plant records have emerged in Shanxi Province. However, a comprehensive, accurate, and scientific catalog of wild vascular plants remains unavailable. Based on volumes 1-5 of the Flora of Shanxi, this study comprehensively collected relevant literature on vascular plant research in Shanxi since 1980. Using extensive field investigations and related research data collected by the authors in Shanxi Province, the wild plant list was reviewed and refined, including revisions to plant names, protection status, and distribution down to the county level. This dataset presents the latest catalog of wild vascular plants in Shanxi, divided into confirmed and doubtful species lists. As of June 26, 2024, this dataset included 2,438 species, 73 subspecies, 229 varieties, and 4 forms across 147 families and 763 genera. The dataset included lycophytes and ferns (117 species, 4 varieties in 15 families and 34 genera), gymnosperms (13 species, 4 varieties in 4 families and 8 genera), and angiosperms (2,308 species, 73 subspecies, 221 varieties, and 4 forms in 128 families and 721 genera). Additionally, 36 species, 4 varieties in 19 families and 27 genera were listed in List of Key Protected Wild Plants in China (2021), and 119 species, 1 subspecies, and 2 varieties in 47 families and 80 genera were listed in List of Key Protected Wild Plants in Shanxi Province (Jin Zheng Han [2023] No. 126). Further work should prioritize species with limited distribution data and species of concern to further enhance catalog plan in Shanxi Province. This research can provide fundamental data for updating the Flora of Shanxi and advancing plant diversity conservation strategies within Shanxi Province.

Database/Dataset Profile

Title A dataset on inventory and geographical distributions of vascular plants in Shanxi, China
Data author(s) Shuai Li, Weihua Liu, Yudan Xu, Xiaobo Tian, Houjuan Song, Xiaoting Yue, Lingling Wu, Qing Zhang, Tieliang Shanguan
Data corresponding author Tieliang Shanguan (sgtl_55@163.com)
Time range 1980-2024
Geographical scope Shanxi
File size 571 KB
Data volume 3,078 records
Data format *.xlsx
Data link https://doi.org/10.57760/sciencedb.27756
https://www.biodiversity-science.net/fileup/1005-0094/DATA/2024317.zip
Database/Dataset composition The dataset includes 2 data tables (confirmed and questionable species), containing a total of 3,078 records (2,744 confirmed and 334 questionable) across 22 fields. The 22 fields are as follow: sequence number, main categories of vascular plants, family number, Chinese family name, family, genus number, Chinese genus name, genus, species number, Chinese name, scientific name, author, scientific name in data sources, rank, reference for taxonomic treatment, status, data source, distribution, rank in List of Key Protected Wild Plants in China (2021), whether it is affiliated with List of Key Protected Wild Plants in Shanxi Province, specimen voucher museum collection barcode/journal source, specimen collector/collection number.
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Application of large language models in biodiversity research
Jiqi Gu, Jianping Chen, Jiangshan Lai
Biodiv Sci    2024, 32 (9): 24258.   DOI: 10.17520/biods.2024258
Accepted: 09 August 2024

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Background & Aims: With the development and advancement of artificial intelligence technology, large language models (LLMs), such as Kimi Chat, have begun to play a significant role in biodiversity research. LLMs’s deep learning and natural language processing technologies, augmented by human feedback reinforced learning (RLHF) and proximal policy optimization (PPO), offer new avenues for handling and analyzing large biodiversity data sets.
Progresses: We explore the application of LLMs, taking Kimi Chat as an example, in investigating biodiversity research questions, reviewing literature, designing hypotheses, organizing and analyzing data, and writing research papers, as well as its potential to enhance research efficiency and quality. (1) LLMs can quickly process vast amounts of scientific literature, helping researchers distill key information and swiftly catch up with the latest research trends in specific fields. (2) LLMs can also assist researchers in formulating research hypotheses and designing experimental protocols, thereby providing abundant scientific inspiration, broadening research perspectives, and enhancing the efficiency of the initial stages of research. (3) In terms of research design, LLMs can offer advice on data collection methods, design of experiment, and statistical analyses to ensure the scientific validity and the logic of the research design. (4) LLMs can assist in scientific writing and peer review processes by helping draft scientific papers and providing suggestions for revision and polishing to enhance the quality and readability of the papers, and it also supports researchers in understanding and responding to peer review comments and optimizing the presentation of research findings. We also discuss the challenges and limitations encountered during using LLMs, such as the need for professional judgment, the homogenization of research methods, the accuracy of data and results, and ethical issues. Additionally, we propose strategies for integrating this technology with traditional biodiversity research methods in the future.
Prospects: We demonstrates how LLMs can aid in biodiversity research, thus advancing scientific discovery and ecological conservation strategies.

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Cited: CSCD(1)
  
Functional diversity and regulation of cuticular hydrocarbons in social insects
Liu Zhixiang, Xie Hua, Zhang Hui, Huang Xiaolei
Biodiv Sci    2025, 33 (2): 24302.   DOI: 10.17520/biods.2024302
Accepted: 20 March 2025

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Background & Aims: Cuticular hydrocarbons (CHCs), widely present in the insect epicuticle, provide significant contributions to many terrestrial insect adaptations. Insect CHCs function primarily in waterproofing, resisting harmful substances, and facilitating chemical communication. Compared to the compositional and functional diversity of CHCs in solitary or subsocial insects, the diversity of social insects offers a valuable source of insights into their unique genetic structure, population composition, and characteristic behavioral patterns.

Progresses: This review characterizes the structures and properties of CHCs that enable particular functions, summarizes their functional diversity, and discusses the influence of both endogenous factors and external elements on the profile variability of CHCs in social insects. Furthermore, potential future research directions are proposed. The CHCs in social insects are regulated through nestmate recognition, caste differentiation, division of labor, social immunity, reproductive state recognition, and inter-specific interactions. Remarkably, some CHCs have been designated for queen pheromones. The CHC profiles of social insects can exhibit remarkable variability to meet the demands of functional differentiation. The synthesis, composition, and content of CHCs in social insects can be influenced by a wide range of internal factors (including gene and hormone levels) as well as extrinsic factors (including diet, gut microbiome, pathogenic organisms, temperature, humidity, ultraviolet radiation, nest materials, etc.).

Prospects: Emerging technologies, such as the quantitative genetic framework, immunohistochemical localization, and fluorescent in situ hybridization, will enable new insights to be obtained into the synthesis, translocation, release, functional diversity, and regulation of CHCs, enhancing our understanding of their role in insect adaptive evolution. The research discussed in this review can provide a theoretical basis for the development of novel technologies to control invasive agroforestry pests.

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The application and outlook of wildlife tracking using sensor-based tags in China
Binyue Lu, Kun Li, Chenxi Wang, Sheng Li
Biodiv Sci    2024, 32 (5): 23497.   DOI: 10.17520/biods.2023497
Accepted: 28 March 2024

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Aims: The tagging, positioning, and tracking of animals are crucial approaches to the study of their spatial movements. In China, the application of sensor-based wildlife tracking technologies for free-ranging animals has gained significant traction since the 1980s. These technologies have been widely employed in studies related to wildlife behavior and ecology. To provide a comprehensive overview of the current status of wildlife tracking technologies in China and offer insights into the future, we conducted this review based on comprehensive literature research.

Methods: We systematically searched academic articles on wildlife tracking studies conducted in China from 1970 to 2022. We compiled information of each study, including the type of sensor and tracking technologies used, the taxonomic group of tracked animals, the research field, and the location of study sites.

Results: We collected 519 relevant articles published between 1970 and 2022, encompassing 185 species belonging to 7 classes and 32 orders. The study sites encompassed 34 provinces (including municipalities, autonomous regions, and special administrative regions) in China. We identified four hotspots of tracking studies within the country: the eastern edge of the Qinghai-Tibet Plateau and surrounding mountainous areas, the middle and lower reaches of the Yangtze River, the coastal areas from East to South China, and the Northeast China region. Five senor-based tracking technologies were identified in these studies: radio telemetry (RT) (accounting for 47.7% of the total researches), radio frequency identification (RFID) (3.2%), light-level global geolocator sensor (GLS) (0.6%), satellite tracking based on the Argos Satellite System (ASS) (9.3%) or Global Navigation Satellite System (GNSS) (39.3%). Among these technologies, VHF radio telemetry has had a longer history and more applications in China; ASS and GNSS technologies have been introduced late but have undergone rapid growth, with GNSS emerging as the most widely applied technology in the past 5 years. Radio telemetry is predominantly employed for large- and medium-sized mammals, small mammals, terrestrial birds, amphibians and reptiles. GNSS technology is mainly applied in tracking swimming and wading birds. ASS technology is primarily used in fish studies, while RFID technology is prevalent in tracking invertebrate. The choice of technology varies across different research fields, with GNSS and ASS satellite tracking being the primary technology used in migration studies.

Conclusions: The application scale of sensor-based wildlife tracking technologies in China is experiencing rapid expansion, resulting in a rapid increase of numbers of tagged animals and accumulated data. In the future, wildlife tracking studies in China should put emphases on: (1) deepening the research to examine the underlying ecological mechanisms and broadening the research scales, (2) facilitating interdisciplinary collaboration and fostering technological innovation, (3) advocating for and promoting data sharing and fostering multilateral cooperation, and (4) continuing to advance the development and improvement of domestic tracking equipment and technologies. This will provide reliable scientific supports for wildlife ecology research and resource conservation and management in China.

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Analyses and suggestions on mechanisms of forestry and grassland administrations in China to achieve targets of Kunming-Montreal Global Biodiversity Framework
Zhou Zhihua, Jin Xiaohua, Luo Ying, Li Diqiang, Yue Jianbing, Liu Fang, He Tuo, Li Xi, Dong Hui, Luo Peng
Biodiv Sci    2025, 33 (3): 24487.   DOI: 10.17520/biods.2024487
Accepted: 06 March 2025

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Aims: There are 23 targets of Kunming-Montreal Global Biodiversity Framework (KMGBF) from the period up to 2030. China is among the mega biodiversity countries with largest human population and faces a lot of challenges on biodiversity conservation. It is very important to understand current biodiversity conservation status and gaps in order to achieve 2030 mission and 2050 vision. In addition, although forestry and grassland administrations in China (FGAC) are considered as the main body of China biodiversity conservation, especially on in situ conservation, ex situ conservation and trade control, there is no detail analysis about the lawful basis and implementation mechanisms of FGAC for the 23 targets. At the same time, there are many national strategic actions or plans on biodiversity conservation, it is very urgent to propose comments and suggestions on these actions or plans in order to make best usage of limited conservation resources. Here we aim to illustrate current biodiversity conservation status and gaps, lawful basis of FGAC’s duties, and propose our suggestions on Chinese biodiversity conservation on 2030 targets.
Methods: We analyzed the lawful basis and implementation mechanisms of FGAC for the 23 targets of KMGBF, from the aspects of ecosystem conservation, species conservation, genetic resources conservation and biosafety, support measures, and fairness requirements. We analyzed the typical route of implementing framework conventions through synergy among governmental sectors, and discussed four stages, i.e. to determine the whole goals, to identify detail targets, to implement relevant actions or plans, enforcement/supervision/evaluation. We also summarized the biodiversity conservation achievements and shortcomings of FGAC, and provided suggestions for future work.
Results: Our analyses indicated that Chinese government attached high importance on biodiversity conservation. The mandate duties of FGAC well consist with 2030 mission. Many national strategic actions or plans on biodiversity were compiled and implemented by FGAC. Many special conservation measures of FGAC, such as ecological conservation compensation and Forestry-Leader Mechanism, had been established and received huge amount support. The conservation networks have been well established and improving across China. The system of in situ conservation, such as national parks, nature reserves, key habitats of wildlife, has been established and improving across all kinds ecosystem and received strong support from governments, local communities and non-governmental organizations (NGOs). The system of ex situ conservation, such as national botanical gardens, endangered species conservation and research centers, had been well designed and received strong support from national/provincial/municipal governments and scientists. Bilateral and multilateral international co-operations had launched many achievements and contributed to global biodiversity conservation. Public awareness is improved through wide spread communication. Many endangered species have been well protected and the quality of ecosystems is improved onwards. Inner problems related to biodiversity conservation are analyzed. Suggestions are provided regarding in situ conservation, ex situ conservation, enforcement/supervision/ evaluation, and mainstreaming of biodiversity.
Conclusion: Biodiversity conservation has achieved great outcome and is becoming important part of Chinese government. However, there is high pressure for FGAC to implement relevant conservation actions or plans. We propose to improve biodiversity conservation networks, establish biodiversity monitoring system, enhance enforcement, supervision and evaluation, and mainstream biodiversity concept into Chinese culture.

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Cited: CSCD(1)
  
The status and distribution pattern of fish diversity in the Yarlung Tsangpo River
Dekui He, Jinnan Chen, Liuyong Ding, Yiyang Xu, Junhao Huang, Xiaoyun Sui
Biodiv Sci    2024, 32 (11): 24143.   DOI: 10.17520/biods.2024143
Accepted: 11 August 2024

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Aims: The Yarlung Tsangpo River, one of the ten longest rivers in China, spans two major zoogeographic regions of the world: The Palearctic and the Oriental realms. While previous papers have focused on small portions of the river, a basin-wide-scale study to catalog its fish composition, diversity patterns, and species fluctuation is lacking. This study synthesized empirical data from field studies over the past two decades on fish diversity in the Yarlung Tsangpo River, compiled a list of fish diversity in the Yarlung Tsangpo River Basin in China, and analyzed the status of the fish diversity and the main threats to its diversity. The findings provide a scientific foundation for management and conservation of fish diversity in the Yarlung Tsangpo River Basin.

Methods: In total, 66 sections were included in this study. Of them, 58 were actually surveyed in the field, and 8 were collected from literatures; two in the upper reaches, 40 in the middle reaches, and 24 in the lower reaches; 24 in the main stream, 33 in the tributaries, 2 in the lakes, 3 in the tributary reservoirs, and 4 wetlands. These sampling sections (locations) were selected according to their geomorphological characteristics, as well as the accessibility of each location for sampling. The fish investgations were conducted from 2004 to 2023. Methods for collecting fishes included gillnets, shrimp coops, and battery-powered backpack electrofisher. After compiling the data from all of the sites, the degree of endemicity was calculated using the corrected weighted endemism index.

Results: There are 155 native species in 10 orders, 25 families, and 70 genera in the Yarlung Tsangpo River Basin. Out of all of the detected species, 29 species and one genus are endemic to the river. Five species were on China’s Key Protected Species List (Grade II); and 26 species were categorised as threatened (i.e. endangered, vulnerable, or near threatened) on the IUCN Red List of Threatened Species and China’s Biodiversity Red List. The sections with high species richness are located in the middle and lower reaches of the Yarlung Tsangpo River, while the lowest species richness is found in the Great Canyon sections. Fish fauna of the river is dominated by Qinghai-Tibetan Plateau, and South Asian fishes. The Jiaresa-Bangxin section of the Yarlung Tsangpo River Grand Canyon may be the boundary between the two major zoogeographical regions of freshwater fish. By the end of 2023, 30 species of non-native fish in 8 orders, 16 families, and 24 genera had been recorded in the natural water bodies of the Yarlung Tsangpo River Basin. Of these non-native fish species, three species were introduced to different regions within the Yarlung Tsangpo River Basin. In recent years, there has been a rapid increase in the introduction of both native fishes and non-native cold-adapted fishes through the plateau’s drainage systems.

Conclusion: Through cataloging the fish diversity in the Yarlung Tsangpo River Basin, we found that invasion of non-native fishes is the main threat to fish diversity. In the future, we should focus on fish surveys of lakes and tributaries in the lower reaches of the river, strengthen the resources for data integration, and establish a basin-level data management platform. Further, taxonomic research should be strengthened through international cooperation. Additionally, long-term monitoring of fish resources should be implemented as soon as possible to monitor fish diversity and promote conservation in the Yarlung Tsangpo River.

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Effects of urbanization on animals: From community to individual level
Hongyu Niu, Lu Chen, Hengyue Zhao, Gulzar Abdukirim, Hongmao Zhang
Biodiv Sci    2024, 32 (8): 23489.   DOI: 10.17520/biods.2023489
Accepted: 18 July 2024

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Background & Aims: Urbanization is a global process accompanied by rapid environmental changes, which accelerates the evolutionary process of urban organisms and reshapes community structure and species interactions in urban ecosystems. In this paper, we reviewed relevant researches on the effects of urbanization on animals at community, population, and individual level. Then we summarized both the advances and shortcomings in the scientific urbanization literature. Finally, we provided an outlook for research in the related fields.

Review Results: Currently, relevant studies primarily reflect the level of urbanization by using the proportion of impervious area or the urban-rural gradient. By replacing time with space, the studies explore the changing trend of species composition and diversity, population demographics, genetic structure of animals, biological traits, phenology, and behavior under urbanization. Most studies focus on descriptive analysis, while mechanism-based research and applied research are relatively lacking.

Prospect: (1) Based on the observed phenomena under urbanization, future studies should conduct controlled experiments to identify the key factors affecting different animals under urbanization and explore the molecular genetic basis of urban biological evolution with molecular methods. (2) Particular attention needs to be paid to adaptive species in urban grey habitats, which are often associated with humans, pets, or food. Understanding how urban species adapt may provide direction and help predict the future effects of urbanization on animals, including human beings. (3) Since complex interspecific interaction networks can buffer the impacts of the change of animal abundance and behavior on ecological services such as pollination, seed dispersal, and pest control to a certain extent, the effects of urbanization on multitrophic networks should be studied further. (4) Finally, basic research on animal diversity and genetic structure should be extended to urban ecological planning and restoration.

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Biodiversity conservation in China: Policy evolution, main measures and development trends
Yingli Cai, Hongge Zhu, Jiaxin Li
Biodiv Sci    2024, 32 (5): 23386.   DOI: 10.17520/biods.2023386
Accepted: 26 April 2024

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Background & Aims: Biodiversity conservation stands as a critical imperative for China’s ecological security and the advancement of an ecological civilization. It also represents a vital public welfare endeavor crucial for fostering sustainable development. Despite significant efforts, China’s biodiversity conservation efforts continue to confront substantial challenges, including habitat fragmentation, declining habitat quality, and the proliferation of invasive species. Existing biodiversity conservation policies have thus far fallen short of effectively reversing the overarching trend of biodiversity loss. In light of these challenges, this paper seeks to explore the visionary objectives of biodiversity conservation in China. It analyzes the evolutionary trajectory of China’s biodiversity conservation policies, highlights key measures implemented, and outlines the development trend of biodiversity conservation development in the country.

Policy evolution: To reconcile the delicate balance between conservation and development imperatives, the state has implemented a diverse array of plans, strategies, notifications, and measures. Beginning with the protection of individual species, China has progressively expanded and refined the scope, objectives, and strategies of biodiversity conservation, gradually crafting a comprehensive policy framework for biodiversity conservation. Reflecting the evolving focus on conservation targets, China’s biodiversity protection has transitioned from single-species protection and classification-based approaches to a more holistic and integrated conservation paradigm. Furthermore, biodiversity conservation efforts have been systematically integrated into various national plans, facilitating comprehensive protection across diverse ecosystems and species. Consequently, China’s biodiversity conservation journey can be delineated into three distinct stages: the nascent phase (pre-1994), the rapid development stage (1994‒2010), and the ongoing in-depth improvement stage (2010‒present).

Main measures: In general, China has implemented a variety of conservation and restoration measures, resulting in notable successes across multiple fronts. These measures can be broadly characterized as direct protection, prevention and control, and sustainable use. Initially, biodiversity conservation efforts primarily focused on direct protection measures. However, over time, there has been a discernable shift towards a more comprehensive approach, encompassing a combination of direct conservation strategies, prevention, control measures, and sustainable utilization practices.

Development trends: To advance the establishment of a robust biodiversity conservation policy framework and elevate the effectiveness of biodiversity conservation efforts, it is imperative to achieve alignment, or the “three fits”, between biodiversity conservation and territorial spatial planning, the advancement of information technology, and the formulation of national strategies. By ensuring coherence and synergy, it is envisaged that this approach will facilitate the attainment of biodiversity conservation objectives and realize the vision of harmonious coexistence between humans and nature by 2050.

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Cited: CSCD(3)
  
Assessment method and the first catalogue of strategic microbial resources
Ke Wang, Peng Zhao, Guomei Fan, Fang Wang, Shiliang Liu, Jing Huang, Lei Cai, Liwei Zhou
Biodiv Sci    2025, 33 (12): 25146.   DOI: 10.17520/biods2025146
Accepted: 22 July 2025

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Aims: Biological resources are closely related to national economic and social development, and has key strategic value in food security, ecological security and energy security of a country. As a basic component of the ecosystem on earth, microorganisms are of great strategic significance to human’s life and the sustainable development of society. However, due to the lack of a sound system for the preservation, development and protection of strategic resources, many biological resources have been lost overseas through smuggling, entrainment and natural losses. 

Method: Referring to other evaluation systems on biological resources, the assessment method to evaluate the strategic value of microbial resources was established in this study. 

Results: Rare and endangered species, high economic value species, bio-safety species and strategic frontier species were chosen as the four aspects for strategic microbial resources, and a scoring system using the method of weighted assignment is established according to these aspects. The scoring system contains 7 different primary criteria with different weights, i.e., the weight of 25% for National conservation strategy, the weight of 15% for conservation status, population biology and economic value, and the weight of 10% for biosecurity, other value and strategic frontier. Based on the criteria, the strategic categories of 773 microbial species were assessed according to the criteria, of which 502 species were assessed as strategic microorganisms, including 440 species of fungi, 7 of oomycetes, 1 of microspore, 53 of bacteria and 1 of archaea. Besides, an online assessing platform (https://www. casbrc.org/assessment) were established with the function of scoring system for strategic microorganism and query for assessed species. 

Conclusion: The strategic assessment method and the list of strategic microbial resources were firstly established in our country, which will provide important references for the collection, preservation, management and application of strategic microbial resources in China.

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Influences of disturbances on successional dynamics of species diversity in mid- subtropical forests
Jia Zhenni, Zhang Yicen, Du Yanjun, Ren Haibao
Biodiv Sci    2025, 33 (2): 24078.   DOI: 10.17520/biods.2024078
Accepted: 17 February 2025

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Aims: In the face of the extinction crisis primarily driven by human activities, understanding the dynamics of forest succession under varying disturbance regimes is more vital than ever. This study seeks to examine the influences of disturbances on the successional dynamics of species diversity in mid-subtropical forests, aiming to provide scientific insights for biodiversity conservation and ecological restoration efforts.

Methods: We selected four typical forests within the Qianjiangyuan section of the Qianjiangyuan-Baishanzu National Park candidate area: evergreen broad-leaved old-growth forests (PR), once-disturbed secondary forests (MD), twice-disturbed secondary forests (SD), and Chinese fir (Cunninghamia lanceolata) plantation forests (PL). A total of 12 1-ha forest dynamics plots (three plots for each forest type) were established in 2009 and recensused every five years. In each census, all free-standing stems ≥ 1 cm in DBH (diameter at breast height) were measured, mapped, and identified to species. With those data, we measured species diversity using four indices: species richness, Shannon-Wiener diversity index, Simpson diversity index, and Pielou’s evenness index, collectively to explore the trajectories and rates of successions of biodiversity under different disturbance regimes.

Results: Our longitudinal data revealed that species richness, Shannon-Wiener diversity index, and Simpson diversity index in PR, MD, and PL increased over succession, while they decreased in SD. Pielou’s evenness index showed divergent dynamics: it initially increased and then decreased in PR and MD, whereas it consistently increased in SD and PL. Noticeably, when Chinese fir was excluded, Pielou’s evenness index in PL decreased over time. The succession rate of various species diversity indices generally showed a declining trend over time, but the rate of species richness and Pielou’s evenness index was mostly not significant. Affected by snow and ice disasters, the successional trajectory of PR deviated from its stable state. The succession rate of species richness in the early recovery stage of the impaired PR was significantly higher than in other forests and decreased significantly over time, while the succession rate of Pielou’s evenness index was low and showed no significant change over time. The succession rate of Pielou’s evenness index in PL was significantly higher than in other forests and decreased significantly over time, while the succession rate of species richness was low and showed no significant difference from MD and SD.

Conclusion: We underscore the differentiated effects of disturbances on the succession of species diversity in subtropical forests. PR demonstrated a high capacity for self-recovery after disturbances, while SD exhibited a decline in species richness, emphasizing the critical role of disturbances in shaping community succession. Our results inform conservation strategies by suggesting that restoration efforts should be tailored to the disturbance history and succession stage of each forest type. For highly disturbed areas like PL, active restoration measures such as tree thinning are necessary to enhance biodiversity recovery, whereas PR might benefit from minimal intervention due to their inherent capacity for self-recovery. This research contributes to global efforts to halt biodiversity loss and promote sustainable forest management by providing evidence-based insights into the complex relationships between disturbance, succession, and species diversity.

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Application of passive acoustic monitoring in Chiropteran research
Yingying Liu, Lixin Gong, Hao Zeng, Jiang Feng, Yongjun Dong, Lei Wang, Tinglei Jiang
Biodiv Sci    2024, 32 (10): 24233.   DOI: 10.17520/biods.2024233
Accepted: 05 December 2024

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Background: Passive acoustic monitoring (PAM) technology has become increasingly significant in wildlife research due to its non-invasive nature and capacity for continuous monitoring. A key taxonomic group for biodiversity and environmental monitoring using PAM are the order Chiroptera, commonly known as bats, with their unique echolocation abilities, nocturnality, and high sensitivity to environmental changes.

Progress: This review aims to comprehensively explore the applications of PAM in Chiropteran research and note the scientific and ecological breakthroughs that this new tool facilitates. We analyze the advantages and limitations of PAM, and summarize methods for effectively collecting and processing acoustic data to estimate and monitor bat diversity, activity patterns, population dynamics, habitat selection, and distribution. The review concludes with case studies from the literature that compare the impact of different environmental factors on bat diversity and activity, and that discuss how these variables affect data collection.

Prospects: This review concludes its assessment by noting the challenges that PAM faces in practical applications; by exploring the future prospects of the technology and its potential contributions to biodiversity conservation; and by proposing future research directions including technological innovation, citizen science involvement, and monitoring strategy optimization. These suggestions will help further advance the application of PAM technology in bat conservation and management by contributing to the protection of biodiversity.

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Research progress on the impacts of urbanization on bats in China
Jiangtian Geng, Fei Wang, Huabin Zhao
Biodiv Sci    2024, 32 (8): 24109.   DOI: 10.17520/biods.2024109
Accepted: 14 July 2024

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Background & Aim: There are more than 140 species of bats in China, accounting for about 10 percent of the world’s bat species. China is one of the countries with the richest bat species diversity in the world. With the development of urbanization, the species diversity of bats in China has been seriously threatened. This paper aims to discuss the current state of research on bats in China under the background of urbanization, and then, based on the threats of urbanization factors faced by bats in China, to propose targeted conservation recommendations.

Progresses: The review preliminarily defines urban bats as those whose life history is not directly controlled by humans, but whose stages such as foraging, roosting, and migration are completed in urban and surrounding areas affected by urbanization. Thus, their morphological, physiological, behavioral, and genetic adaptive characteristics are influenced by the urbanization In the process of urbanization, bats face a range of threats, including human hunting, human buildings, roads, light pollution, noise pollution, and chemical pollution; this is mainly manifested in three aspects in China: loss of habitat, utilization of biological resources, and disturbance of habitat. Despite this, preliminary bibliometric analysis indicates that research on the impacts of urbanization on bats in China is relatively lacking, and this field needs more attention.

Conservation Measures: In view of the significant impact of urbanization threats on the existence of bats in China and the scarcity of related research, it is necessary to strengthen the protection of bats in the process of urbanization in China. We suggest that research in the fields of taxonomy and conservation genomics should be intensified, special surveys for urban bats should be conducted, and the protection of bat habitats should be valued. As a result, the management of light and noise pollution should be strengthened, legislative protection should be carried out for bats that are unique to China and have a higher level of threat, and science popularization education related to bats should be carried out for the public, i to better protect bats in the process of urbanization.

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Advances in tardigrade diversity, distribution characteristics and ecological functions
Chen Dingsong, Liu Zikai, He Ziyang, Chen Weidong
Biodiv Sci    2025, 33 (2): 24406.   DOI: 10.17520/biods.2024406
Accepted: 26 February 2025

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Background: Tardigrades, commonly known as water bears, are microscopic invertebrates inhabiting diverse environments across marine, freshwater, and terrestrial ecosystems. As essential components of microfauna communities, they are renowned for their extraordinary extremotolerant adaptability and occupy multiple trophic levels within micro-food webs, indicating their significant ecological roles. Despite significant advancements made in understanding tardigrade biodiversity, identification methodologies, physiological and ecological traits recently, a comprehensive summaries remains lacking.

Bibliometric analyses & Perspective: Through bibliometric analyses of global tardigrade research over the past three decades, this review systematically summarizes the research progress in the new species discovery, identification methods, distribution characteristics, and ecological functions of tardigrades. The primary findings encompass: (1) Up to 2024, 1,488 documented tardigrade species inhabit a wide range of aquatic and terrestrial ecosystems, including moss, soil, marine environments, polar regions, and even anthropogenic habitats, with new species being continuously discovered. (2) Current identification methods remain predominantly morphology-based, while standardized molecular tools for phylogenetic resolution are critically underdeveloped, severely constrain taxonomic advancements. (3) We describe characteristics in aquatic ecosystems and unique adaptive mechanisms to global change stressors including climate warming and atmospheric nitrogen deposition. (4) Preliminary summaries reveal their ecological roles in micro-food webs through interactions with meiofauna and microbial communities.

Future prospects: We propose three critical research priorities: (1) Emphasizing the need to improve molecular biology research methods; (2) Exploring the distribution characteristics across different ecosystems on large spatial and long-term temporal scales; (3) Elucidating their position in micro-food webs and ecological functions.

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A dataset on the morphological, life-history, and ecological traits of cetaceans worldwide
Zhang Songqi, Lu Yi, Chen Bingyao, Yang Guang, Wang Yanping, Chen Chuanwu
Biodiv Sci    2025, 33 (2): 24442.   DOI: 10.17520/biods.2024442
Accepted: 02 March 2025

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There are 94 cetacean species worldwide, which represent one of the most enigmatic and threatened groups among mammals. Throughout their transition from land to water, cetaceans have evolved numerous morphological, life history, and ecological traits that enhance their adaptability to aquatic environments. However, a comprehensive global database of cetacean ecological characteristics is still lacking. Our study systematically reviews books, literature, and other data resources to collect and compile cetacean characteristic data, including 15 morphological traits, 12 life-history traits, and 11 ecological traits. Based on the collected data, we quantified the trait completeness for each species and employed phylogenetic linear regression model to explore the factors influencing the ratio of data completeness. The completeness of the morphological traits ranges from 72.15% to 100.00%, life history traits from 17.72% to 100.00%, and ecological traits from 25.32% to 100.00%. The regression analyses showed that species described earlier and inhabiting nearshore habitats tend to exhibit higher data completeness. This dataset provides essential foundational information for research in cetacean ecology, conservation biology, and evolutionary biology. It also serves as a significant platform for data sharing and communication in regional and global cetacean conservation efforts.

Database/Dataset Profile

Title A dataset on the morphological, life-history, and ecological traits of cetaceans worldwide
Data author(s) Songqi Zhang, Yi Lu, Bingyao Chen, Guang Yang, Yanping Wang, Chuanwu Chen
Data corresponding author Chuanwu Chen (chencw@nnu.edu.cn)
Time range Until December 2024
Geographical scope Worldwide
File size 1.4 MB
Data format *.xlsx
Data link https://doi.org/10.57760/sciencedb.j00152.00007
https://www.biodiversity-science.net/fileup/1005-0094/DATA/2024442.zip
Database/Dataset composition The dataset consists of one data file and one data description file, encompassing 38 species traits of 94 cetaceans worldwide.
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A report on newly described taxa of Hemiptera and other 28 orders of Insecta in China (2022‒2023)
Liyun Jiang, Jing Chen, Zhaoxu Li, Yupeng Nan, Gexia Qiao
Biodiv Sci    2024, 32 (11): 24411.   DOI: 10.17520/biods.2024411
Accepted: 13 January 2025

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Aims: This study aims to compile and update information on China’s newly described taxa of Hemiptera and 28 other orders of Insecta (excluding Coleoptera, Diptera, Lepidoptera, and Hymenoptera) from 2022 to 2023.

Methods: We summarized the list of type specimens and bibliographies for China’s newly described taxa of Hemiptera and 28 other insect orders during 2022-2023. The preservation locations of type specimens and the journals in which the new species were published were also analyzed.

Results: From 2022 to 2023, a total of 727 new taxa were published for Hemiptera and 28 other insect orders in China, comprising 668 new species/subspecies, 58 new genera and 1 new family. Among these, Hemiptera, Orthoptera, and Plecoptera were the top three orders with the highest number of new taxa. Specifically, Hemiptera had 252 new species, 22 new genera, and 1 new family; Orthoptera had 183 new species and 19 new genera; and Plecoptera included 54 new species and 1 new genus. No new taxa were reported for Mantophasmatodea, Zoraptera, Isoptera, and five other orders during this period. Based on an analysis of provincial administrative regions, hotspots for new taxa discovery were concentrated in Southwest China (Yunnan, Guizhou, Xizang and Sichuan), South China (Guangxi, Hainan and Guangdong), Central China (Hunan and Hubei), and Southeast China (Taiwan, Zhejiang, and Fujian). Yunnan led with 338 new species, representing 50.60% of the total, followed by Guangxi with 115 new species (17.22%), and Guizhou, Xizang, and Sichuan with 90, 88, and 79 new species, respectively. In total, 5,252 type specimens of the 668 new species and subspecies were deposited across 70 preservation facilities. Over 95% of holotypes and paratypes are preserved in 40 universities and 11 research institutions in China, while less than 5% of paratypes are deposited in 3 universities and 12 research institutions abroad. Type specimens are predominantly stored in universities, followed by research institutes and museums. These newly described taxa were published in 320 articles across 35 journals. Over 70% of these articles appeared in Zootaxa, ZooKeys and European Journal of Taxonomy. The Chinese journal Entomotaxonomiaaccounted for 4.69% of the articles, while Systematic Entomology and 24 other journals each published one relevant article.

Conclusion: This study provides a timely update on the biodiversity data of Hemiptera and 28 other insect orders in China for 2022-2023. It plays a crucial role in accelerating the development of data-sharing platforms and enhancing the understanding of insect biodiversity.

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A dataset on the plant growth form and life form of vascular plants in China
Bohan Zheng, Xinyao Chen, Jian Ni
Biodiv Sci    2024, 32 (7): 23468.   DOI: 10.17520/biods.2023468
Accepted: 24 June 2024

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Plant growth form and life form are important morphological traits for understanding the response and adaptation of plants to environmental changes and are of great significance for the study of the relationship between plants and their environment and ecosystem functions. They are also vital traits in understanding of the geographic distribution pattern of plants and the mechanism of the formation and maintenance of biodiversity. According to the Flora Reipublicae Popularis Sinicae and Flora of China, the descriptions of plant growth form and life form in the current edition of Flora Reipublicae Popularis Sinicae are characterized by non-uniform classification standards, in which some of the information is missing, incorrect or ambiguous. In this paper, based on the information of plant traits in national and local flora literature and field surveys, we revised the growth form and life form traits of vascular plants, and established a dataset of the growth form and life form of vascular plants in China. The dataset consists of 35,329 vascular plant species, including plant names, growth form and life form traits, and their data sources. The plant names included names both from the Flora Reipublicae Popularis Sinicae, Flora of China, and from the Catalogue of Life China: 2023 Annual Checklist, to allow the readers to cross-check the differences between both taxonomic systems. Based on the degree of stem lignification, plants were classified into two groups: woody plants (12,600 species, 35.7%) and herbaceous plants (22,729 species, 64.3%). The woody plants were primarily dominated by medium shrub growth form (2,917 species, 23.2%) and evergreen life form (7,107 species, 56.4%). The herbaceous plants were dominated by the forb growth form (19,900 species, 87.6%) and the perennial life form (19,554 species, 86.0%). Among the woody plants, tree species were dominated by the families Lauraceae and Fagaceae, and of shrub species by Ericaceae, Fabaceae, and Rosaceae; evergreen species were dominated by Ericaceae and deciduous species primarily consisted of Rosaceae. Among herbaceous growth form, the forbs were dominated by Asteraceae, and the grasses by Poaceae. The annual herbaceous plants were dominated by Poaceae, biennial species by Boraginaceae, and perennial species by Asteraceae. This dataset covers all the vascular plant species and their growth form and life form in China, and can provide a data foundation for the study of plant traits in future research endeavors.

Database/Dataset Profile

Title A dataset on the plant growth form and life form of vascular plants in China
Data author(s) Bohan Zheng, Xinyao Chen, Jian Ni
Data corresponding author Jian Ni (nijian@zjnu.edu.cn)
Time range 1959-2023
Geographical scope China
File size 7.58 MB
Data volume Number of records in two file: 35,329
Data format *.xlsx
Data link https://www.scidb.cn/s/JZfIjm
https://doi.org/10.57760/sciencedb.10903
https://www.biodiversity-science.net/fileup/1005-0094/DATA/2023468.zip
Database/Dataset composition The dataset consists of one data file and one data description file, data file including two work sheets: 1. A dataset on the plant growth form and life form of vascular plants in China (Chinese version); 2. A dataset on the plant growth form and life form of vascular plants in China (English version).
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Cited: CSCD(2)
  
The impact of road noise and light pollution on the behavior of Chiroptera
Meng Zhang, Youbing Zhou, Dahu Zou
Biodiv Sci    2025, 33 (7): 24503.   DOI: 10.17520/biods.2024503
Accepted: 10 April 2025

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Background & Aim: Chiroptera, the only mammalian order capable of true powered flight, has attracted significant attention from researchers due to its unique biological characteristics, such as echolocation, complex niche adaptability, and diverse dietary habits. In recent years, the precipitous decline in bat populations has posed a potential threat to ecosystem stability, making Chiroptera a key focus in conservation biology. As a crucial component of modern socio-economic development, road infrastructure exerts profound impact on plant and animal populations, becoming a major research hotspot in conservation biology. This study focuses on bats, systematically reviewing relevant research and proposing strategies to mitigate the adverse effects of roads on bat populations while improving their habitat quality.

Review Results: This study focuses on Chiroptera, conducting a systematic review of 108 representative studies from both domestic and international sources. Through in-depth analysis, we systematically summarized the effects of road noise and road light pollution on bats during road construction and use. The results indicate that road noise and light pollution universally and diversely affect the acoustic structure and foraging behavior of bats, with species-specific responses. Based on these findings, we propose a series of targeted strategies. First, we recommend establishing and enhancing road assessment and regulatory systems, integrating ecological impact assessments into the entire process of road planning and construction to ensure that economic development aligns with ecological conservation. Second, we suggest increasing noise-blocking facilities, implementing sound barriers and green belt, and other noise-mitigation measures to minimize road noise on bat habitats. Additionally, optimizing road lighting design by using low-intensity, low-frequency flickering lights to reduce light pollution and its disruptive effects on bats.

Perspective: These strategies aim to mitigate the negative impacts of roads on Chiroptera, improve their living conditions, and provide scientific and practical guidance for the conservation of this unique and ecologically important mammalian group.

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A comparison of bird sound recognition performance among acoustic recorders
Wantao Huang, Zezhou Hao, Zixin Zhang, Zhishu Xiao, Chengyun Zhang
Biodiv Sci    2024, 32 (10): 24273.   DOI: 10.17520/biods.2024273
Accepted: 03 December 2024

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Aims: Passive acoustic monitoring technology has been widely used for monitoring bird species, enabling non-invasive and long-term effective monitoring. Extensive data collection requires automated identification technologies for effective analysis. However, differences in recording device performance can affect the accuracy of automated software in identifying bird species.

Methods: Six separate recording devices from various manufacturers are tested by recording bird call playback across four frequency bands. We use BirdNET as the automatic bird sound identifier under two types of vegetation environment, five categories of distance between the recording devices and sound source, and three sound source directions. Our goal is evaluating the impact of these variables on bird species identification performance. We assess the monitoring performance of different recording devices by comparing the basic parameters and configurations of the devices and constructing a generalized linear model (GLM) to statistically analyze the identification results.

Results: Our analysis suggests the type of recording device significantly affects the ability for BirdNET to correctly identify bird species. As distance increases, the effectiveness of the devices in monitoring decreases, with the identification accuracy of BirdNET significantly higher for distances within 50 meters than beyond. Further, the direction of sound impacts identification performance, with accuracy significantly decreasing when the sound source is in opposite direction of the recording device in identifying the four types of bird sound signals with different frequency bandwidth ranges. Additionally, the vegetation type significantly affects the attenuation of bird call signals, with overall identification accuracy in grassland vegetation 40.1% higher than forest vegetation.

Conclusions: Our findings suggest the effectiveness of field recording monitoring should be assessed before selecting and deploying long-term recording monitoring equipment, in addition to evaluating equipment costs and parameters. Based on our evaluation, monitoring distance and direction settings should be optimized to enhance the effectiveness of monitoring strategies.

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Cited: CSCD(1)
  
Cross-regional bird species recognition method integrating audio and ecological niche information
Jiangjian Xie, Chen Shen, Feiyu Zhang, Zhishu Xiao
Biodiv Sci    2024, 32 (10): 24259.   DOI: 10.17520/biods.2024259
Accepted: 26 September 2024

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Aim: Passive acoustic monitoring plays a pivotal role in studying avian populations, community dynamics, and behaviors. For extensive passive acoustic monitoring, employing deep learning techniques to automatically identify bird species from their vocalizations is essential. However, closely related species often produce highly similar calls, leading to confusion and false positives, which can compromise the effectiveness of deep learning models. This paper presents a novel method that integrates audio data with ecological niche information to enhance species recognition accuracy. Here, ‘ecological niche’ encompasses a species’ role in its environment, including its habitat, diet, and behavior.

Methods: The approach begins with the development of an audio recognition model using the ResNet18, a prominent deep learning framework known for its capability to extract high-level features from audio signals. Subsequently, a maximum entropy model is employed to estimate the distribution of bird species and derive ecological suitability indices for various locations. These indices provide the necessary ecological niche information. An integrated model, NicheNet, is then constructed to combine audio features with ecological niche data for improved species recognition.

Results & Conclusion: The integration of audio and ecological niche information through NicheNet demonstrates substantial improvements in recognition accuracy. Specifically, NicheNet enhances Top-1 recognition accuracy by 12.9% and Top-5 recognition accuracy by 10.6% compared to the ResNet18 model. Additionally, NicheNet reduces the near species error rate by 3.1%, the near genus error rate by 1.8%, and the near family error rate by 8.0%. Analysis of recognition outcomes for congeneric species with similar vocalizations reveals that NicheNet significantly refines classification by leveraging ecological niche information, thereby improving the discrimination of vocally similar but ecologically distinct species. This method effectively addresses the challenge of misidentification among closely related and vocally similar bird species that differ in their ecological niches, thereby advancing the accuracy of cross-regional bird species recognition based on vocalizations.

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Cited: CSCD(2)
  
Effects of urbanization on interspecific interactions involving birds
Zhiqing Hu, Lu Dong
Biodiv Sci    2024, 32 (8): 24048.   DOI: 10.17520/biods.2024048
Accepted: 05 June 2024

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Background & Aim: Urbanization has caused widespread changes in species habitats, leading to changes in community composition and species traits. This process has notably transformed the interspecific interactions involving birds, but current research has limited knowledge about this change. In this paper, the modification patterns of predator-prey interactions, host-parasite interactions, competitive interactions, and mutualistic interactions involving birds in urban environments are reviewed, to provide suggestions for future research and conservation efforts on birds in urban environments.

Review Results: With increasing urbanization, the identity of species involved in various forms of interspecific interactions is directly affected by changes in species composition, leading to changes in the process, intensity, and outcomes of interspecific interactions. In predator-prey interactions, anthropogenic disturbances, enhanced resource availability, and habitat changes modify the community composition of both predators and prey. These changes affect the predation behavior of predators and the antipredator behavior of prey. In host-parasite interactions, pollution and zoonotic disease transmission change parasite taxa, while the spatial concentration and diminished diversity of urban bird communities heighten disease transmission risks. Additionally, factors such as dietary quality and environmental disturbances influence host immunophysiology. In competitive interactions, adaptation of birds to urban environment leads to intensification of competitive behavior, and stabilization of the environment and resource availability may increase competitive intensity and promote competitive exclusion. In mutualistic interactions between birds and plants, the loss of native species and the introduction of exotic species reduce the uniqueness of interactions. Landscape features such as habitat fragmentation affect spatial patterns of pollination and seed dispersal. Changes in the participants and processes of interspecific interactions can modify the nodes and edges in interaction networks and the structural characteristics of such networks, decrease in species diversity simplifies the network structure, while the loss of specialist species and rise of generalist species enhance evenness and reduce the specialization of the interactive networks.

Prospect: There are three important directions for future research on interspecific interactions in urban birds: (1) Development of methods for identifying and quantifying interspecific interactions; (2) Development of ecological network theories, including multilayer networks, in the study of interspecific interactions in urban birds; (3) Utilization of interspecific interactions to increase the effectiveness of conservation in urban bird conservation.

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Vascular epiphyte diversity and the correlation analysis with host tree characteristics: A case in a mid-mountain moist evergreen broad-leaved forest, Ailao Mountains
Yanyu Ai, Haixia Hu, Ting Shen, Yuxuan Mo, Jinhua Qi, Liang Song
Biodiv Sci    2024, 32 (5): 24072.   DOI: 10.17520/biods.2024072
Accepted: 28 April 2024

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Aims: Vascular epiphytes have a significant contribution to maintaining biodiversity, carbon storage, ecological hydrology and nutrient flux in a forest ecosystem. Assessing the diversity pattern of epiphytes thus can provide a basis for community assembly mechanism, conservation and resource utilization of epiphytes in the context of global change. In this context, we aimed to analyze the species and phylogenetic diversity including the phylogenetic structure of vascular epiphytes, and their correlations with host characteristics in the subtropical evergreen broad-leaved forest in the Ailao Mountains, Southwest China.

Methods: Using a built-in canopy crane, we observed 311 individuals of dominant host trees in the 1.44 ha permanent plot and recorded the occurrence of vascular epiphytes including host tree identity, diameter at breast height (DBH) and tree height. Afterward, species richness (S), phylogenetic diversity (PD) and phylogenetic structure (net nearest taxa index (NTI) and net relatedness index (NRI)) of vascular epiphytes and their correlation with DBH, height and species of host trees were evaluated.

Results: A total of 62 species of vascular epiphytes belonging to 26 families and 44 genera were found. Remarkably, significant positive correlations were found between the epiphyte species richness and PD with the host DBH and height (P < 0.001). No significant correlations were detected between standard phylogenetic diversity (SES.PD) and species richness. The species richness and PD of epiphytes in Stewartia pteropetiolata were significantly lower than in other host species (P < 0.001). However, SES.PD significantly increased with the increase in host DBH (P < 0.05) and decreased with the increase in host height (P < 0.05). The phylogenetic structures of epiphytes on the Castanopsis wattii and Michelia floribunda were divergent, while epiphytes on the Lithocarpus xylocarpus and Stewartia pteropetiolata were clustered. Epiphytes on the other host trees did not show any phylogenetic structural pattern.

Conclusion: Host tree characteristics, including host size and host species differences, are the key factors that maintain the diversity pattern of vascular epiphytes. These results can provide a solid foundation for future analysis of the pattern and maintenance mechanism of epiphyte diversity from multiple dimensions and perspectives.

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Species diversity and maintenance mechanisms of benthic macroinvertebrate assemblages in the Xijiang River
Xue Bai, Zhengfei Li, Yang Liu, Junqian Zhang, Duopeng Zhang, Xin Luo, Jiali Yang, Lina Du, Xuankong Jiang, Ruiwen Wu, Zhicai Xie
Biodiv Sci    2024, 32 (7): 23499.   DOI: 10.17520/biods.2023499
Accepted: 24 June 2024

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Aims The Xijiang River, renowned for its rich freshwater biodiversity and endemism, presents an intriguing yet understudied ecosystem. This study aims to elucidate the species diversity patterns and underlying mechanisms maintaining macroinvertebrate communities in this mega river. Drawing from published literature and an extensive field survey conducted from 2021 to 2023, our objectives include compiling a comprehensive species checklist, identifying ecological drivers shaping community structure, and proposing conservation strategies.

Methods Macroinvertebrates were sampled from key water bodies within the Xijiang River, including main stream, tributaries, and plateau lakes from the years 2021 to 2023. One-way ANOVA was employed to analyze species diversity indices across different water bodies. PERMANOVA (permutational multivariate analysis of variance) and PCoA (principal co-ordinates analysis) were used to assess community structure variation, while canonical correspondence analysis and variation partitioning identify potential key factors influencing macroinvertebrate community organization.

Results A total of 704 species from 437 genera, representing 150 families across 10 orders and 5 phyla, were documented (combining 506 historical records with 352 findings from 2021 to 2023). The proportion of species endemic to China reaches as high as 26% of the total number of species. The average density and biomass in the present survey period were 437.53 ind./m2 and 38.65 g/m2, respectively. Tanypus sp., Glyptotendipes sp., Parafossarulus striatulus and Corbicula flumineaemerged as the dominant species. Species richness and diversity indices were highest in tributaries, followed by the main stream and lakes. Canonical correspondence analysis (CCA) revealed that a combination of environmental factors (e.g., altitude, conductivity and chemical oxygen demand with permanganate) and spatial factors jointly influenced macroinvertebrate community structure. Moreover, variation partitioning highlighted the dominance of environmental factors in tributaries and lakes, while spatial factors predominantly influenced main stream communities.

Conclusion This study presents the most comprehensive inventory of macroinvertebrates in the Xijiang River to date, showcasing its significance as a global biodiversity hotspot. Despite the region’s rich macroinvertebrate biodiversity, anthropogenic pressures have led to a decline in species richness. To safeguard and restore macroinvertebrate diversity and endemism, proactive conservation measures are imperative. Strategies should include curbing overfishing, regulating illicit mining practices, restoring natural hydrological patterns and riparian zones, mitigating point and non-point source pollution, and preventing the encroachment of non-native species.

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Composition and spatial distribution of dominant weed species in urban lawns of China
Zerong He, Peng Ye, Shuting Wang, Yongxin Guan, Shujun Yan, Xinru Hong
Biodiv Sci    2025, 33 (1): 24133.   DOI: 10.17520/biods.2024133
Accepted: 19 February 2025

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Aims: This paper conducts a comprehensive review of literature from the past two decades, focusing on two primary objectives. First, it explores the composition of dominant weed species in urban lawns across China, including the types and characteristics of invasive weeds. Second, it investigates the key factors influencing the distribution and spread of weeds in urban lawns in China. This study aim to provide a theoretical foundation for the scientific management and control of weeds in urban lawns and help protect biodiversity and promote sustainable urban development. Additionally, these findings can support efforts at monitoring weed population dynamics to maintain ecological balance and enhance the health and sustainability of urban green spaces.

Methods: This study conducted a comprehensive review of the literature on urban lawn weeds in 98 cities across China between 2002 and 2024. A statistical analysis of the weed species identified in the literature was carried out after gathering information on dominant weed species, including their Chinese and Latin names, family and genus details, life forms, and flora. These data were used to determine the species, origin, degree, and route of invasion for invasive weeds. Furthermore, β-diversity was assessed using the Jaccard similarity index. The data for this study were sourced from the CNKI database, WANFANG DATA, and VIP database. Statistical analyses were performed using R and SPSS software. The correlation between invasive weed distribution and climatic factors was examined through a nonlinear relationship, and the primary climatic factors influencing the distribution of weed species in urban lawns were identified using redundancy analysis (RDA). Together, these methods enabled a deep exploration of the species composition, spatial distribution, and main influencing factors of urban weeds in China.

Results: (1) A total of 208 dominant weeds, spanning 40 families and 137 genera, were identified in urban lawns. The Compositae was the most prevalent in the literature, constituting 22.12% of the total. The geographical distribution of these flora is complex, with cosmopolitan families holding a significant advantage (23 families). However, at the genus level, the number of temperate distribution genera (57) surpassed that of tropical distribution genera (42), resulting in a tropical to temperate ratio of 2.33 and 0.74 at the family and genus levels, respectively. (2) A total of 37 species of invasive weeds were identified, belonging to 11 families, predominantly Compositae, Gramineae and Fabaceae (59.46%). This included 10 species of malicious invasive species, 11 species of serious invasive species, 4 species of local invasive species, and 12 species of general invasive species. The distribution of invasive weeds in southern China was notably concentrated. (3) The variation in weed composition among different cities aligns with the β-diversity theory, as variation was primarily influenced by geographical distance and climatic conditions.

Conclusion: Plants, particularly Compositae and Gramineae weeds, which are primarily annual and perennial herbs, hold a significant advantage over other species due to their widespread distribution. These plants demonstrate ecological adaptability and competitiveness in the ecological context of urban lawns. A considerable number of invasive weeds are present in these lawns, with some species exhibiting strong dispersal capabilities and posing serious threats to the existing ecological environment. These species are more concentrated in the southern region of the country, indicating that the area faces greater challenges in managing and preventing the spread of invasive weeds. The variation in weed composition between cities aligns with β-diversity theory which suggests species distribution is primarily influenced by geographical distance and climatic conditions. Future research should seek to more accurately assess the risk of invasive weed establishment and further investigate the mechanisms driving diffusion of dominant weeds. Considering the increased influence of global warming on ecosystem dynamics, it is essential to strengthen methods for predicting the distribution of dominant weeds, particularly non-native invasive species, and to conduct research on effective means of biological control. Additionally, a deep study of the life history of frequently occurring weeds is necessary to provide a scientific basis for effective prevention and control strategies.

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Chinese enterprises’ biodiversity disclosure index construction and financing effects
Xinmeng Tang, Tao Qin
Biodiv Sci    2025, 33 (1): 24264.   DOI: 10.17520/biods.2024264
Accepted: 04 November 2024

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Backgrounds & Motivations: The financial gap in addressing biodiversity loss is considerable, highlighting the need for the involvement of enterprises and financial institutions in biodiversity protection to provide necessary funding for biodiversity risk management. However, the information regarding to biodiversity in reports from Chinese listed enterprises remains limited, often lacking substance and credibility. It is imperative for enterprises to establish a biodiversity information disclosure mechanism that signals low biodiversity risk to financial and capital markets, thereby enhancing their financing capabilities and levels.

Methods: This study calculates the biodiversity information disclosure index for Chinese enterprises based on an analysis of 11,867 enterprise social responsibility and environmental, social and governance (ESG) reports from 1,714 listed enterprises between 2006 and 2022, utilizing internet crawling technology for data collection. Employing quantitative analysis methods, the research examines the current status and primary issues related to biodiversity disclosure, ultimately constructing an econometric model to explore the financing effects of biodiversity information disclosure from the perspectives of financing constraints, costs, and outcomes.

Results: The findings indicate a continuous increase in both the number and proportion of enterprises disclosing biodiversity information in China, demonstrating a stable growth trend with modest annual increases. However, challenges persist, including low disclosure quality, heightened industry polarization, and significant heterogeneity among enterprise types. Furthermore, biodiversity information disclosure exhibits significant effects on financing. Specifically, each increasing unit in enterprise biodiversity information disclosure can effectively reduce enterprise financing constraints by 2.02% to 5.07%, lower the cost of enterprise debt financing by 2.51% to 2.78%, lower the cost of enterprise equity financing by 1.55% to 1.83%, and facilitate adjustments to the enterprise financing structure, thereby decreasing (increasing) the proportion of debt (equity) in financing by 2.19%.

Policy Implications & Contributions: In light of these findings, policy recommendations are proposed in the study, including the implementation of financing incentive mechanisms, the establishment of standardized disclosure protocols, the monetization of biodiversity value, and an emphasis on disclosure trends among non-key industries. These recommendations are designed to enhance enterprise engagement in biodiversity protection and to mobilize enterprise resources towards the promotion of biodiversity-friendly practices within industry development.

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China’s large cities in global biodiversity hotspots: Conservation policies and optimization directions
Jing Gan, Xiangxu Liu, Xueming Lu, Xing Yue
Biodiv Sci    2025, 33 (5): 24529.   DOI: 10.17520/biods.2024529
Accepted: 27 March 2025

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Background & Aims Global biodiversity hotspot cities are where urban development and biodiversity conservation come into conflict, playing a critical role in maintaining biodiversity both within and beyond their regions. However, there has been no dedicated study focusing on Chinese cities within global biodiversity hotspots. Based on Target 12 of the Kunming-Montreal Global Biodiversity Framework and Priority Action 18 of the China National Biodiversity Conservation Strategy and Action Plan (2023-2030), this research examines the biodiversity conservation policies of 16 Chinese cities with populations exceeding one million within global biodiversity hotspots from five key aspects: (1) biodiversity conservation planning and sustainable utilization plans, (2) urban biodiversity survey, monitoring, and assessment, (3) habitat restoration and ecological corridor construction, (4) the connection between urban residents and nature as well as their health and well-being, and (5) urban ecosystem functions and services. By comparing these conservation policies with international case cities, the study identifies existing challenges and proposes optimization directions to support biodiversity-friendly urban development while balancing ecological protection and high-quality urban growth.

Review ResultsThe findings show that both Chinese and international hotspot cities face common challenges, including a lack of awareness of their unique ecological location, insufficient long-term biodiversity-inclusive urban planning, and a general scarcity of biodiversity monitoring data. Additionally, Chinese cities exhibit specific issues such as limited coverage and single-method approaches in urban biodiversity monitoring, insufficient attention to biodiversity-related public experiences and supporting facilities, and inadequate focus on the provision of urban ecosystem services.

Optimization Trends Future enhancements to urban biodiversity conservation policies in these hotspot cities should prioritize the followings: (1) prioritizing the development of spatial planning for biodiversity conservation; (2) exploring the integrated application of multi-source data monitoring technologies; (3) standardizing multi-dimensional approaches to urban biodiversity experiences; (4) promoting synergistic enhancement of urban biodiversity conservation and ecosystem services.

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Community structure of macrobenthos and ecological health evaluation in the restoration area of the Yellow River Delta wetland
Yanmei Ni, Li Chen, Zhiyuan Dong, Debin Sun, Baoquan Li, Xumin Wang, Linlin Chen
Biodiv Sci    2024, 32 (3): 23303.   DOI: 10.17520/biods.2023303
Accepted: 27 February 2024

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Aims: The internationally important wetland biodiversity conservation project of the Yellow River Delta started in 2019. This study used macrobenthos community characteristics and their relationship with environmental factors to understand the health status of this ecosystem and assess the succession stage and repair effect after three years of restoration.
Methods: This study investigated the macrobenthos and environmental factors in the restoration area in May (spring), August (summer) and October (autumn) in 2022, respectively. The community structure, biodiversity, and their relationships with major environmental factors were analyzed by classical taxonomy, biodiversity index, cluster analysis, multi-dimensional scaling analysis, and Spearman correlation analysis.
Results: A total of 16 macrobenthic species belonging to 5 phyla, 6 classes and 15 families were collected in spring, summer and autumn. Insecta species were found dominant in species composition. The number of macrobenthic species in the Yellow River Delta wetland restoration area showed an increasing trend during the survey period, with Chironomidae sp., Radix swinhoei, and Hippeutis cantori becoming the dominant species in the area, as well as key characteristic and differential species in the community structure. The species density was significantly correlated with indicators such as specific conductance, salinity, total carbon, ammonium nitrogen, and nitrite nitrogen (P < 0.01). The rapid biological comprehensive evaluation index evaluated the restoration area as the “sub-health” state.
Conclusion: The restoration area is developing towards a healthier and more orderly direction but is currently in a “sub-health” state, indicating a need for continued restoration work. Ecological succession is a slow process which requires long-term ecological monitoring in our research area, including an analysis of the reconstruction process of the disturbed macrobenthic community structure in the Yellow River Delta ecological restoration area, and an exploration of the regular changes in ecological succession.

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Cited: CSCD(1)
  
Assessing activity pattern of sika deer (Cervus nippon) and their response to roads in the Northeast China Tiger and Leopard National Park
Xiaotong Mai, Jia Kang, Zichen Li, Tianming Wang
Biodiv Sci    2024, 32 (11): 24178.   DOI: 10.17520/biods.2024178
Accepted: 26 September 2024

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Aim: Wildlife modify their daily activity to satisfy food demands, to breed, or to avoid mortality risk. Assessing patterns of wildlife activity is crucial for understanding adaptations to inter-species competition, predation risks, and human disturbances. Sika deer (Cervus nippon) is a primary prey species for tigers (Panthera tigris) and leopards (P. pardus) in the Northeast China. However, the sika deer’s habitat is disturbed by roads. This study assessed the influence of road disturbances on the activity patterns of sika deer, considering their gender, age, reproductive status, and seasonal activity. The aim is to deepen our understanding of behavioral changes in animals due to human disturbance, providing a scientific basis for future conservation and management of sika deer, tigers, and leopards in the Northeast China Tiger and Leopard National Park.

Methods: From April 2021 to March 2022, we deployed 41 pairs of camera traps along the road in Northeast China Tiger and Leopard National Park to collect data of sika deer activity. Based on gender, age, and reproductive status of individuals, we classified sika deer into five sex/age groups. We used the kernel density method to estimate diel activity patterns and activity levels of sika deer, based on 9,825 independent detections of the species. Furthermore, we compared the activity levels and patterns across different seasons, sex/age groups, and levels of road disturbance.

Results: Peak activity of sika deer was observed in June and October. Diel activity patterns varied across seasons, with sika deer being crepuscular during spring and summer, nocturnal in autumn, and diurnal in winter. Diel activity patterns differed between age and sex groups of sika deer; fawns were diurnal, while adults were predominantly crepuscular, with only adult males having an increased probability of nocturnal activity. The negative effects of roads on the activity patterns of sika deer were mainly observed in autumn, which coincided with peak human and vehicular activity. Moreover, sika deer exhibited significantly reduced activity levels near roads during autumn. At sites close to roads, all sex/age groups of sika deer tended to decrease their activity levels.

Conclusion: This study is the first to document seasonal differences in activity patterns and variations among sex/age groups of sika deer in Northeast China. Additionally, it addresses the impact of roads on the diel activity patterns and activity levels of sika deer, revealing that during the high-traffic autumn season, road disturbances significantly affect their activity patterns. Across sex/age groups, sika deer respond similarly to road disturbances, with a shorter period of activity to minimize exposure to road risks while maximizing food intake. Our study emphasizes the negative impact of human activities on the behavioral patterns of this ungulate species. Additionally, it also highlights the behavioral plasticity of sika deer in response to anthropogenic disturbance, suggesting their ability to efficiently utilize alternative food resources. Our methodology provides insights into wildlife management strategies, and we recommend long-term monitoring of wildlife population dynamics and behavioral responses, especially in the Northeast China Tiger and Leopard National Park.

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New vertebrate species discovered in China in 2023
Jianping Jiang, Bo Cai, Bin Wang, Weitao Chen, Zhixin Wen, Dezhi Zhang, Lulu Sui, Shun Ma, Weibo Wang
Biodiv Sci    2024, 32 (11): 24327.   DOI: 10.17520/biods.2024327
Accepted: 09 December 2024

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Aim: To collate and report new vertebrate species discovered in China in 2023.

Method: This paper summarizes the basic information about discoveries of vertebrate species from academic literature published in 2023, including 73 citations.

Results: In 2023, 93 vertebrate species were discovered in China, including 69 species new to science, 15 species not previously reported in China, and 9 valid species that were upgraded from subspecies. These species belong to 14 orders, 40 families, and 61 genera. Among them, there are 18 new species of fish; 31 species of amphibian, including 23 new species and 8 newly recorded in China; 22 species of reptile, including 21 new species and 1 newly recorded in China; 10 species of bird, including 4 species upgraded from subspecies and 6 newly recorded in China; 12 species of mammal, including 7 new species, 1 newly recorded in China, and 4 species upgraded from subspecies. Ectotherm vertebrates account for 76% of new discoveries; most of the fishes, amphibians, reptiles, and birds were species of Cypriniformes (15/18), Anura (27/31), Squamata (21/22), and Passeriformes (8/10), respectively, while most of mammals were species of Eulipotyphla (6/12) or Rodentia (5/12). These 93 newly discovered vertebrates were recorded in 21 provincial regions. Of these species, 79 were recorded in only one provincial region, while there were 29, 13, 10, 10, and 9 new species recorded in Yunnan, Xizang, Guangxi, Sichuan, and Guizhou, respectively. A total of 79 of these discovered species have been supported by molecular systematics. There were 82 species published in academic journals, 14 of which were published in two English journals in China and 3 of which were published in two Chinese journals.

Conclusion: This article provides basic information needed for the classification and protection of vertebrate species in China. In addition, it indicates that ectotherm vertebrates may be the hot group of vertebrate species studied in diversity research in China, and an integrated classification approach is essential to support future taxonomic studies.

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Bird community diversity patterns and their drivers in the Qinghai region of Kunlun Mountains
Bin Li, Pengfei Song, Haifeng Gu, Bo Xu, Daoxin Liu, Feng Jiang, Chengbo Liang, Meng Zhang, Hongmei Gao, Zhenyuan Cai, Tongzuo Zhang
Biodiv Sci    2024, 32 (4): 23406.   DOI: 10.17520/biods.2023406
Accepted: 17 April 2024

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Aims: Kunlun Mountains is a crucial part of Qinghai-Xizang Plateau that presents a challenging environment for wildlife surveys and community research due to its high-elevation, cold, and hypoxic environment. This study aims to reveal patterns of avian community diversity across different regions, and their drivers.

Method: Surveys were conducted on wild birds within the Qinghai region of the Kunlun Mountains in the December 2021 and July 2022 using the line transects method. A total of 102 grids, each measuring 10 km × 10 km, with different altitudinal gradients and habitat types were investigated. Bird community diversity across different regions was calculated using R software. Subsequently, environmental variables were extracted using ArcGIS software, and a generalized additive model (GAM) was employed to fit the potential non-linear relationships between diversity indices and various variables.

Results: A total of 87 bird species representing 14 orders, 31 families, and 59 genera were recorded. Among these, 5 species were classified as first-class national protected wildlife, 11 species were classified as second-class national protected wildlife, and 8 species were identified as local new distributions. The analysis of distribution patterns demonstrated higher avian community diversity during summer compared to winter, with grassland and meadow habitats showing significantly greater diversity than other habitats. Furthermore, bird community diversity during both winter and summer exhibited similar single peak patterns along the altitudinal gradient. Climate variables revealed seasonal differences in bird diversity, with precipitation of coldest quarter significantly impacting richness during summer and annual precipitation during winter. Additionally, isothermality and temperature seasonality had the most substantial impact on the Shannon-Wiener and Simpson diversity indices in both winter and summer. These findings underscored the significance of water resources and stable climatic conditions on bird community diversity in the Qinghai region of the Kunlun Mountains.

Conclusion: This study provides a scientific foundation for the conservation of the bird resources in the Kunlun Mountains, and offers crucial data for the planning and establishment of national park in future.

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Cited: CSCD(1)
  
Genomic resequencing reveals the genetic diversity of the cultivated water caltrop, and the origin and domestication of ‘Nanhuling’
Xiangtan Yao, Xinyi Zhang, Yang Chen, Ye Yuan, Wangda Cheng, Tianrui Wang, Yingxiong Qiu
Biodiv Sci    2024, 32 (9): 24212.   DOI: 10.17520/biods.2024212
Accepted: 02 September 2024

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Aims: Understanding the origins and domestication processes of cultivated crops, is crucial for understanding human civilization. Trapa, commonly known as water caltrop, belongs to the family Lythraceae and is an annual floating-leaf aquatic herb. As a traditional aquatic vegetable crop, the fruit of Trapa has long been a significant food source in early Chinese agricultural societies. However, in recent years, rapid urbanization in China has resulted in habitat destruction, posing a serious threat to its genetic diversity. Moreover, ‘Nanhuling’, a major cultivar of Trapa, holds high economic and cultural value, yet its origin and domestication history are not fully understood.
Methods: In this study, we employed population genomics to investigate the genetic diversity of cultivated water caltrop and the domestication history of ‘Nanhuling’. The dataset for this study was generated by whole-genome resequencing of 31 diploid cultivated T. natans and 23 diploid wild T. natans samples.
Results: Population genetic structure and differentiation indicated that wild and cultivated T. natans belonged to distinct gene pools. Cultivated T. natans originated from the diploid wild T. natans in the Yangtze River Basin. The overall genetic diversity level of cultivated T. natans is lower than that of wild T. natans (0.68 × 10−3 vs. 1.35 × 10−3), and the effective population size is significantly reduced compared to wild T. natans (~4,000 vs. ~7,700), suggesting that cultivated T. natans experienced a genetic bottleneck during domestication. Among cultivated T. natans, ‘Nanhuling’ exhibited the lowest level of genetic diversity and the slowest decay rate of linkage disequilibrium, which may be related to its high degree of domestication and strong selection pressure. Based on the population dynamic history inferred from the FASTSIMCOAL2 ancestral simulation model, we found that there had been gene flow events among ‘Nanhuling’, ‘Wuling’, and other cultivated T. natans. The domestication of ‘Nanhuling’ occurred approximately 669 years ago, consistent with literary records from the Ming Dynasty.
Conclusions: This study is significant as it deepens our understanding of the domestication and genetic evolution of cultivated T. natans. Insights gained from this work may help improve agriculturally valuable characteristics of T. natans, such as crop yields and nutrient content.

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The biogeochemical niche based on elementome and its applications in different ecosystems
Rui Qu, Zhenjun Zuo, Youxin Wang, Liangjian Zhang, Zhigang Wu, Xiujuan Qiao, Zhong Wang
Biodiv Sci    2024, 32 (4): 23378.   DOI: 10.17520/biods.2023378
Accepted: 08 April 2024

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Background & Aims: All biological organisms are constructed with a specific range and ratio of bioelements—namely the elementome. Organisms integrate multiple elements in optimal ratios to adapt to environmental heterogeneity. Biological elementome is assumed to be species-specific, which is determined by evolutionary history (phylogenetic distances) and controlled by inter-species competition and homeostasis. In community ecology, bioelemental composition and the variations in elementome provide an ideal indicator for quantifying the niche segregation of certain species in a community and predicting the possible responses of niche (displacement, expansion or concentration) to changes in environmental conditions. Biogeochemical niche (BN) quantifies species niches using the concept of elementome and n-dimensional hypervolume. On the basis of a brief summary of niche theory and ecological stoichiometry, we introduced the theoretical framework and the confirmatory studies of biogeochemical niche hypothesis (BNH) in this review. The prospects of its applications in different ecosystems were also discussed.

Review results: According to the BNH, the biogeochemical niche of certain species is defined as a function of phylogenetic distances (taxonomy), species sympatry (inter-species competitive pressure) and homeostasis/plasticity (the ability to maintain a stable elemental composition). This theory applies not only to plants, but also to animals and microbes. Using “biogeochemical niche(s)”, “metabolomic niche(s)”, “stoichiometric niche(s)” as key words, we conducted literature searches utilizing Web of Science (WoS) and CNKI, and manually picked out 84 relevant studies in November 2023. The studies mainly focused on C, N and P, and the most common keywords were “ecological stoichiometry” and “elemental composition”. In terms of taxa, the main taxa concerned in the studies were plants (54 articles), followed by animals (14 articles) and microorganisms (14 articles). We review the recent progress of BNH by taxa in this article.

Prospects & Suggestions: We suggest that the study of BNH be extended from C, N and P to more bioelements, to identify the species niche more accurately in higher dimensions. In different ecosystems, especially in stressful habitats, organisms should change their elementome to adapt to varied environments. More studies focusing on additional taxa (aquatic plants, plankton, fish, etc.) or certain habitats (freshwater or saline lake, river, high mountain, desert, etc.) are likely to help validate the universality of BNH. Furthermore, we propose to study the variations in biogeochemical niche at different life history stages of living beings, and bridge BN and population dynamics, to provide evidence for mechanism of species coexistence.

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Seasonal dynamics of arthropod communities during horse dung decomposition in Inner Mongolian grasslands
Jianwei Cheng, Manhou Xu, Yongjing Dou, Yadong Wang, Yanan Wang, Xinmin Liu, Frank Yonghong Li
Biodiv Sci    2024, 32 (6): 24018.   DOI: 10.17520/biods.2024018
Accepted: 12 June 2024

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Aims: Ground-active arthropods play a crucial role in the decomposition of organic material in terrestrial ecosystems, yet little is known about how seasonal variations influence dung arthropod communities.
Methods: This study conducted a field experiment in Inner Mongolian grasslands to investigate the composition dynamics of the arthropod communities in horse dung excreted during different seasons and analyze their relationship with environmental factors.
Results: We found that: (1) Initial water content did not significantly differ across spring, summer, and autumn, but organic matter content was significantly lower in summer dung compared to spring and autumn, while pH was significantly lower in autumn compared to spring and summer. (2) Abundance and group numbers of dung arthropods were significantly higher in autumn horse dung on day 3 and 360 of the decomposition compared to spring horse dung. Similarly, the abundance and species number of dung beetle communities on day 3 and 7 of the decomposition were significantly higher in autumn dung compared to summer. Abundance and generic numbers of Staphylinidae were also substantially higher in autumn dung on day 3 and 7 of the decomposition compared to spring and summer.
Conclusion: Early stage decomposition of horse dung is influenced by organic matter and water content, shaping arthropod community composition. Later stages of decomposition are predominantly regulated by soil temperature and moisture. These findings provide a foundation for further research on the complex interplay between seasonal factors and arthropod dynamics during dung decomposition in Inner Mongolian grasslands.

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2023 annual report on new taxa and nomenclatural changes for Chinese plants
Cheng Du, Jun Liu, Wen Ye, Shuai Liao
Biodiv Sci    2024, 32 (11): 24253.   DOI: 10.17520/biods.2024253
Accepted: 27 December 2024

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Aims: Since 2020, the average annual number of changes in plant names in China has accounted for roughly 1.5% of all changes. Although these plant name changes are not large, cumulative changes over time should not be ignored. Indeed, it is necessary to annually compile information on new taxa, records, and name changes to Chinese plants to integrate these changes into the Catalogue of Life China in a timely manner to facilitate more accurate references for academia and research.

Methods: We collected data on newly discovered taxa and name changes for Chinese higher plants by reviewing 233 journals and related monographs, supplemented by cross-referencing and systematic review using various online databases to ensure the accuracy and comprehensiveness of the compiled information. This compilation involved 419 articles from 63 journals and 4 monographs, and mainly focused on the new taxa and nomenclatural changes in higher plants in 2023.

Results: In 2023, China reported several new taxonomic findings, including 14 genera, 241 species (including new hybrid species), 13 infraspecific taxa, 13 higher taxa (including 7 subfamilies, 4 supertribes, and 2 tribes), 2 subgenera, and 6 sections in higher plants. Additionally, 185 novel combinations (173 at the species level and 12 at the infraspecific level) and 15 new names were published. At the national level, 1 new record family, 5 new record genus, 82 new record species, and 4 new record infraspecies were recently documented. Furthermore, 86 names were synonymized into 58 names. Five species that had not been observed for many years were rediscovered, and one species distribution was excluded. Among the newly published species, there were 9 bryophytes, 23 pteridophytes (including 1 infraspecific taxon), 1 gymnosperm hybrid, and 221 angiosperms (including 2 hybrids and 12 infraspecific taxa). Detailed molecular evidence was provided for 116 of these novel species at the time of publication that account for 46% of all new species. Additionally, 62 species were assessed as threatened according to IUCN standards upon their publication, which represents 24% of all new species. By location, the four southwestern provinces, i.e. Yunnan, Xizang, Guangxi, and Sichuan, published the highest number of new species and accounted for two-thirds of the total new species reported nationwide. In particular, Mêdog County recorded the highest number of new species among county-level administrative units, with 14 new species and records. Likewise, Yingjiang County reported the highest number of national new records, with 21 new plant records documented.

Conclusion: In 2023, China witnessed a net increase of 262 new taxa of higher plants that accounts for roughly 0.56% of all Chinese higher plant species. In addition, 200 names underwent changes, which accounts for 0.43%. These changes represented 0.99% of all Chinese higher plant names modified in 2023 and encompasses both species additions and nomenclature treatments. Multiple indicators suggest that the number of newly published plant taxa and name changes in China are beginning to show a downward trend. However, data tracking and analysis are needed to determine if this decline will continue in the future.

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Application of passive acoustic methods in biodiversity monitoring and research
Zhishu Xiao
Biodiv Sci    2024, 32 (10): 24462.   DOI: 10.17520/biods.2024462
Accepted: 23 December 2024

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Advances in lineage sorting theories and their detection methods
Yanwen Lv, Ziyun Wang, Yu Xiao, Zihan He, Chao Wu, Xinsheng Hu
Biodiv Sci    2024, 32 (4): 23400.   DOI: 10.17520/biods.2023400
Accepted: 28 March 2024

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Background & Aims: Lineage sorting (LS) refers to the process in which multiple populations are descended from a common ancestral population or species and are now reproductively isolated from one another. It provides an approach to gain insights into speciation, and is often classified into the phases of polyphyly, paraphyly, and monophyly. The first two phases are in the state of incomplete lineage sorting (ILS) where gene trees do not correctly reflect species trees. The third phase is in the state of complete LS where gene trees are concordant with species trees. Here, we reviewed relevant theories and summarized recent progresses in method for LS detection.

Progress: We first systematically discussed the coalescent theories of how genome sites with distinct evolutionary properties (neutral or selective) in an ancestral population were transmitted to progeny populations. We discussed the potential relationships between gene trees and species trees for neutral and selective genes, respectively. Secondly, we delved into LS analyses based on the neutral DNA sequences, including construction of phylogeny under ILS and the network-based phylogenetic analysis. We then discussed the impacts of selection on LS analysis and methods for detecting both directional and balancing selection based on gene trees and species trees. Finally, we discussed a few open questions about the effects of mating system on LS, the detection of ILS, and the effects of pollen and seed flow on LS.

Prospect: New theories are needed to explore how mating system shapes the LS process for both selective and neutral genes. To appropriately assess ILS for individual genes based on species trees, it is crucial to improve the method estimating species trees and to fully utilize the potential of genome sequence data in future study. Given a high frequency of natural hybridization in plant species, a phylogenetic network method is needed to simultaneously examine pollen and seed flow together with ILS. Answers to these questions could help us to understand in-depth the LS process in plant species.

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Key issues and advancement strategies for China’s OECMs in alignment with the Kunming-Montreal Global Biodiversity Framework
Wang Xiaoqian, Deng Yi
Biodiv Sci    2025, 33 (3): 24569.   DOI: 10.17520/biods.2024569
Accepted: 07 March 2025

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Background & Aims: The 15th Meeting of the Conference of the Parties (COP15) to the United Nations Convention on Biological Diversity (CBD) proposed the Kunming-Montreal Global Biodiversity Framework and “3030 target” with the most attention. Other effective area-based conservation measures (OECMs) are widely recognized as a cost-effective new type of conservation management tool that can achieve the 3030 targets by significantly increasing the protected areas on land and in the ocean while considering social and economic factors. The study takes the compliance work under the Kunming-Montreal Global Biodiversity Framework as the background in China, seizes the relevant requirements of the Third Plenary Session of the 20th Central Committee of the Communist Party of China as an opportunity, leverages the characteristic advantages of OECMs and China’s institutional advantages, then analyzes the current status of China’s OECMs actions to identify key issues in advancing OECMs implementation (including significant opportunities and practical challenges), finally proposes strategic recommendations for advancing the work.
Results: Key opportunities for OECMs implementation in China lie in closely aligning with the integrated optimization goals of the “ecological-living-production spaces”, proactively identifying OECMs types that not only achieve conservation outcomes under government leadership but also attract market participation. By leveraging their advantage of balancing production, living, and ecological needs, which makes them more appealing under market economy conditions, these OECMs can effectively address current shortcomings such as lack of funding and insufficient specialized planning support. The practical challenges in the implementation of OECMs in China include unclear identification authorities and procedures, unaligned identification criteria and policy frameworks, insufficient financial and technical incentives for social participation, and the lack of research and promotion of the Chinese model. Proposed strategies include clarifying the identification authorities and procedures for OECMs at the national level, developing adaptive criteria and OECMs management guidelines, encouraging diversified social participation and financing mechanisms for OECMs, and initiating cost-benefit research on OECMs as a model with Chinese characteristics.
Conclusion & Recommendation: In the logical analysis of key issues and corresponding advancement strategies for OECMs implementation in China, the conclusions of this study are illustrated through typical cases, reflecting a novel perspective that integrates scientific research, policy analysis, and practical experience. This study anticipates leveraging the distinctive features of China’s institutional framework—clear objectives, effective measures, robust safeguards, and rigorous oversight—to strategically harness OECMs, thereby supporting the achievement of China’s implementation goals and fostering a new model for fulfilling its commitments.

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Cited: CSCD(1)
  
Population genetic structure and evolutionary history of Hemibagrus guttatus based on mitochondrial genomes
Hong Deng, Zhanyou Zhong, Chunni Kou, Shuli Zhu, Yuefei Li, Yuguo Xia, Zhi Wu, Jie Li, Weitao Chen
Biodiv Sci    2025, 33 (1): 24241.   DOI: 10.17520/biods.2024241
Accepted: 20 September 2024

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Aim: Hemibagrus guttatus has historically been known as one of the “four famously economic fish in the Pearl River”. However, due to cascade development, water pollution, and overfishing, wild populations of H. guttatus have drastically declined. In February 2021, H. guttatus was listed as a national category II key protected wild animal species. The study is to investigate the population genetic structure and evolutionary history of H. guttatus to identify actions that can improve scientific management and protection of wild H. guttatus populations.

Methods: A total of H. guttatus samples were collected from 19 locations in the Pearl River and the Hanjiang River. We used multiple approaches, including phylogeny, divergence time estimation, and population genetics, to explore genetic diversity, genetic structure and population historical demography based on mitochondrial genomes.

Results: Genetic diversity analyses revealed nucleotide diversity in the H. guttatus populations of the Pearl River and Hanjiang River exhibit extremely low nucleotide diversity, indicating an urgent protection of H. guttatus populations is necessary. Phylogenetic trees and haplotype network indicated that H. guttatus populations in the Pearl River and the Hanjiang River formed independent lineages, with two sub-lineages present in the Pearl River. Divergence time estimation analysis suggests that the Pearl River populations and the Hanjiang River populations split between 0.284 and 0.401 million years ago (Ma), while the two sub-lineages in the Pearl River diverged between 0.092 to 0.132 Ma. Bayesian skyline plots suggested that overall H. guttatus populations experienced significant population contraction and expansion between 0.072 and 0.101 Ma and 0.024 and 0.033 Ma, respectively. This analysis also suggested that the Pearl River populations underwent significant population expansion between 0.024 and 0.032 Ma.

Conclusions: Results from this study suggest Pleistocene climate change in South China may be an important driving factor that triggered H. guttatuslineage divergence. Further, sea level fluctuations induced by the late Pleistocene glacial cycles and the Last Glacial Maximum may have influenced the distribution and effective population size of H. guttatus populations. Based on the results of this study, we recommend the following: (1) strengthen supervision of fisheries administration, (2) establish protected areas to maintain H. guttatushabitat, and (3) increase monitoring of Hanjiang River populations. Moreover, the maternal lineage of sampled fish should be determined (by mitochondrial sequencing) before reintroduction to avoid blind release of non-local parents or offsprings into local rivers. Implementation of these practices will help preserve, and even improve, the genetic diversity of H. guttatus, which will allow them to remain an important economic fish for years to come.

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The updated checklist of reptiles in Guizhou Province, China
Hui Ran, Tianyou Yang, Xiaoqi Mi
Biodiv Sci    2024, 32 (4): 23348.   DOI: 10.17520/biods.2023348
Accepted: 26 April 2024

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Aim: Species inventory is a fundamental task in biodiversity research and conservation practices, and detailed species catalogue is of great significance for biodiversity research and conservation. This study aims to update the list of reptiles in Guizhou Province to promote scientific research and protection efforts.

Method: Based on the reptile checklist of Reptilian Fauna of Guizhou, combining with bibliographies on reptile taxonomy in Guizhou Province published in the past 38 years since the publication of the above monograph, this paper revise and update the list of reptiles in Guizhou Province.

Results: As of June 30, 2023, a total of 120 species distributed across 2 orders, 21 families, and 57 genera were recorded in Guizhou Province. It comprised 5 species in 5 genera and 3 families of Testudines, and 115 species in 52 genera and 18 families of Squamata (including 27 species in 12 genera and 6 families of Lacertilia, and 88 species in 40 genera and 12 families of Serpentes). The resulting reptilian diversity was the same as Sichuan Province, which were both ranked at the fifth in China, only following Yunnan, Guangxi, Guangdong and Fujian Province. For species listed in the Reptilian Fauna of Guizhou, the taxonomy or Chinese common names of 78 taxa were updated or revised accordingly. Furthermore, the provincial records of 3 species were removed, while 23 species were added to the previous checklist (including 5 new species and 18 new provincial records of Guizhou). The composition of the reptile fauna in Guizhou Province was mainly composed of the Oriental Realm (105 species), the remaining 15 species were considered to have a widespread distribution, with no species represented from the Palaearctic Realm. Of the recorded diversity, 11 species were listed as Class II nationally protected, 29 species were considered as threatened based on China’s Red List of Biodersity∙Vertebrates, 27 species were endemic to China, and the type localities of 5 species were in Guizhou, including Gekko liboensis, Hemiphyllodactylus dushanensis, H. huishuiensis, Protobothrops maolanensis, and Goniurosaurus liboensis.

Conclusion: This article and its data can be used for understanding the changes and distributions of reptile species in Guizhou Province, providing basic data support for the protection of reptile resources in Guizhou Province. It is recommended to increase the research on the classification and distribution of reptiles in Guizhou Province, which will further clarify the reptile resources in Guizhou Province.

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