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Species diversity and geographical distribution of marine benthic shell-bearing mollusks around Donghai Island and Naozhou Island, Guangdong Province
Qiyu Kuang, Liang Hu
Biodiv Sci    2024, 32 (5): 24065.   DOI: 10.17520/biods.2024065
Accepted: 28 April 2024

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Aims: Marine benthic shell-bearing mollusks are one of the most important components of marine benthic fauna and one of the key groups influencing marine ecosystem and sediments. The west coast of Guangdong is located in the Northern South China Sea (NSCS) and is rich in marine benthic shell fauna. However, it is also the area with a great lack of surveys of the marine benthic shell fauna, which seriously hinders the development of geographical divisions of offshore benthic fauna. Donghai Island and Naozhou Island have been well studied in terms of marine benthic mollusks. They are also the key areas to reveal the geographical pattern of benthic animals in the NSCS. Here we aim to report on the species diversity and geographical distribution of benthic mollusks found on the coast of the two islands and adjacent waters.

Methods: Based on historical records from previous studies, historical specimens preserved in the collection of the South China Sea Institute of Oceanology, and more than 2,600 specimens collected in 2021-2023 by the School of Geography and Planning, Sun Yat-sen University, an up-to-date checklist of known marine benthic shell-bearing mollusks living around Donghai Island and Naozhou Island was compiled. The geographical distribution patterns of all species were analysed based on their northern limits in the East Asian continental shelf.

Results: A total of 207 species from 144 genera and 73 families were identified in the field collections. Thirty-eight of these were new to the area. So far, a total of 602 benthic mollusks from 330 genera and 115 families have been recorded in the waters around Donghai Island and Naozhou Island, making this area the most species-rich area on the continental coast of the NSCS in terms of marine benthic shell-bearing mollusks. Of the 602 benthic mollusk species, 26.2% were tropical warm-water species, 49.3% were tropical-subtropical warm-water species and 24.4% were eurythermal species. The number of species that were also recorded in the nearshore waters of Hainan, Beibu Gulf and Eastern Guangdong accounted for 89.0%, 80.2% and 80.2% of the total species, respectively.

Conclusion: The results show that the coast of Donghai Island, Naozhou Island and the adjacent waters are rich in marine benthic shell-bearing mollusks. The shell fauna here has typical tropical characteristics and is most closely related to that of Hainan Island. It is recommended that these two areas could be placed in the same ecoregion with regard to the bioregionalization of the coastal and shelf benthic fauna. The present work enriches the benthic shell-bearing mollusks in the sea east of Leizhou Peninsula and provides up-to-date data to support the bioregionalization of benthic fauna in the NSCS.

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Advances of marine biogeography in China: Species distribution model and its applications
Yunwei Dong, Menghuan Bao, Jiao Cheng, Yiyong Chen, Jianguo Du, Yangchun Gao, Lisha Hu, Xincheng Li, Chunlong Liu, Geng Qin, Jin Sun, Xin Wang, Guang Yang, Chongliang Zhang, Xiong Zhang, Yuyang Zhang, Zhixin Zhang, Aibin Zhan, Qiang He, Jun Sun, Bin Chen, Zhongli Sha, Qiang Lin
Biodiv Sci    2024, 32 (5): 23453.   DOI: 10.17520/biods.2023453
Accepted: 02 March 2024

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Background & Aim: Marine biogeography is a subject investigating the spatiotemporal distributions of marine organisms and the processes and drivers of changes in species distributions. Research in marine biogeography is promising for the conservation of marine biodiversity and the stability of ecosystem functioning and crucial for the sustainability of utilizing marine resources. Species distribution models (SDMs) are an important tool for assessing and predicting the biogeographical changes in marine species distributions.

Progresses: This review consists of three main parts: (1) the development process and current status of marine biogeography studies in China; (2) the commonly used approaches to answer the questions related to marine biogeography with a special focus on SDMs; (3) the research trends and hotspots of marine biogeography studies in China, mainly concerning the shifts in species distribution under global changes, phylogeography of marine species, biological invasion, population connectivity, marine conservation planning, marine ecological restoration and recovery, adaptation of marine species to extreme environments, as well as management of marine fisheries and mariculture planning.

Prospects: In this review, we further outlined the prospects for the future development of marine biogeography and emphasized the importance of optimizing SDMs. We also called for developing comprehensive databases of marine environments and organisms to strengthen the integration of marine biogeography with other disciplines. We hope this review will provide useful insights for the studies of marine biogeography in China.

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Cited: CSCD(1)
  
Application of large language models in biodiversity research
Jiqi Gu, Jianping Chen, Jiangshan Lai
Biodiv Sci    2024, 32 (9): 24258.   DOI: 10.17520/biods.2024258
Accepted: 09 August 2024

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Background & Aims: With the development and advancement of artificial intelligence technology, large language models (LLMs), such as Kimi Chat, have begun to play a significant role in biodiversity research. LLMs’s deep learning and natural language processing technologies, augmented by human feedback reinforced learning (RLHF) and proximal policy optimization (PPO), offer new avenues for handling and analyzing large biodiversity data sets.
Progresses: We explore the application of LLMs, taking Kimi Chat as an example, in investigating biodiversity research questions, reviewing literature, designing hypotheses, organizing and analyzing data, and writing research papers, as well as its potential to enhance research efficiency and quality. (1) LLMs can quickly process vast amounts of scientific literature, helping researchers distill key information and swiftly catch up with the latest research trends in specific fields. (2) LLMs can also assist researchers in formulating research hypotheses and designing experimental protocols, thereby providing abundant scientific inspiration, broadening research perspectives, and enhancing the efficiency of the initial stages of research. (3) In terms of research design, LLMs can offer advice on data collection methods, design of experiment, and statistical analyses to ensure the scientific validity and the logic of the research design. (4) LLMs can assist in scientific writing and peer review processes by helping draft scientific papers and providing suggestions for revision and polishing to enhance the quality and readability of the papers, and it also supports researchers in understanding and responding to peer review comments and optimizing the presentation of research findings. We also discuss the challenges and limitations encountered during using LLMs, such as the need for professional judgment, the homogenization of research methods, the accuracy of data and results, and ethical issues. Additionally, we propose strategies for integrating this technology with traditional biodiversity research methods in the future.
Prospects: We demonstrates how LLMs can aid in biodiversity research, thus advancing scientific discovery and ecological conservation strategies.

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Cited: CSCD(1)
  
A dataset on inventory and geographical distributions of vascular plants in Shanxi, China
Shuai Li, Weihua Liu, Yudan Xu, Xiaobo Tian, Houjuan Song, Xiaoting Yue, Lingling Wu, Qing Zhang, Tieliang Shanguan
Biodiv Sci    2025, 33 (7): 24317.   DOI: 10.17520/biods.2024317
Accepted: 30 June 2025

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Clarifying the diversity and distribution of wild vascular plants in Shanxi Province is crucial for effective plant diversity conservation efforts in the region. Flora of Shanxi, the most authoritative record of plant cataloging and distribution in Shanxi, has been available for over 20 years. During this period, the plant classification system has evolved significantly, and many new plant records have emerged in Shanxi Province. However, a comprehensive, accurate, and scientific catalog of wild vascular plants remains unavailable. Based on volumes 1-5 of the Flora of Shanxi, this study comprehensively collected relevant literature on vascular plant research in Shanxi since 1980. Using extensive field investigations and related research data collected by the authors in Shanxi Province, the wild plant list was reviewed and refined, including revisions to plant names, protection status, and distribution down to the county level. This dataset presents the latest catalog of wild vascular plants in Shanxi, divided into confirmed and doubtful species lists. As of June 26, 2024, this dataset included 2,438 species, 73 subspecies, 229 varieties, and 4 forms across 147 families and 763 genera. The dataset included lycophytes and ferns (117 species, 4 varieties in 15 families and 34 genera), gymnosperms (13 species, 4 varieties in 4 families and 8 genera), and angiosperms (2,308 species, 73 subspecies, 221 varieties, and 4 forms in 128 families and 721 genera). Additionally, 36 species, 4 varieties in 19 families and 27 genera were listed in List of Key Protected Wild Plants in China (2021), and 119 species, 1 subspecies, and 2 varieties in 47 families and 80 genera were listed in List of Key Protected Wild Plants in Shanxi Province (Jin Zheng Han [2023] No. 126). Further work should prioritize species with limited distribution data and species of concern to further enhance catalog plan in Shanxi Province. This research can provide fundamental data for updating the Flora of Shanxi and advancing plant diversity conservation strategies within Shanxi Province.

Database/Dataset Profile

Title A dataset on inventory and geographical distributions of vascular plants in Shanxi, China
Data author(s) Shuai Li, Weihua Liu, Yudan Xu, Xiaobo Tian, Houjuan Song, Xiaoting Yue, Lingling Wu, Qing Zhang, Tieliang Shanguan
Data corresponding author Tieliang Shanguan (sgtl_55@163.com)
Time range 1980-2024
Geographical scope Shanxi
File size 571 KB
Data volume 3,078 records
Data format *.xlsx
Data link https://doi.org/10.57760/sciencedb.27756
https://www.biodiversity-science.net/fileup/1005-0094/DATA/2024317.zip
Database/Dataset composition The dataset includes 2 data tables (confirmed and questionable species), containing a total of 3,078 records (2,744 confirmed and 334 questionable) across 22 fields. The 22 fields are as follow: sequence number, main categories of vascular plants, family number, Chinese family name, family, genus number, Chinese genus name, genus, species number, Chinese name, scientific name, author, scientific name in data sources, rank, reference for taxonomic treatment, status, data source, distribution, rank in List of Key Protected Wild Plants in China (2021), whether it is affiliated with List of Key Protected Wild Plants in Shanxi Province, specimen voucher museum collection barcode/journal source, specimen collector/collection number.
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Ecological impacts of centralized large-scale photovoltaics and wind farms: Progress and prospects
Yunyue Peng, Yongmei Luo, Zenan Xu, Tong Jin
Biodiv Sci    2024, 32 (2): 23212.   DOI: 10.17520/biods.2023212
Accepted: 07 December 2023

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Background and AimsDriven by China’s carbon neutrality goals, renewable energy is growing drastically, spurring the large-scale development of photovoltaics (PVs) and wind power. Despite this prevalence, systematic reviews detailing the ecological concerns associated with these technologies are scarce.

Method We provide an overview of domestic and international research on the environmental impact of centralized PV and onshore wind farms, focusing on species diversity and ecosystem services.

Results PVs and wind farms both alter climate factors, including temperature, humidity and wind speed. The construction of PVs and wind farms damages vegetation, causing soil erosion and water loss. Construction also results in solid waste and wastewater, contributing to pollution around the site. The ecological impact of PVs is mainly reflected by changes in vegetation and habitat quality, which can have adverse effects on certain species. In relatively arid areas, PVs can play a role in lowering temperatures and increasing humidity, promoting vegetation recovery. In desert areas, they can act as windbreaks. Wind farms can result in soil and vegetation disturbances, bird collisions and mortality, and habitat fragmentation, all of which affect species migration and regional ecosystem services. Despite these potential issues, current research remains insufficient in assessing ecological impact systematically.

Prospects We recommend research focusing on three particular areas: (1) Improving and unifying survey methods for accessing ecological impacts on centralized PVs and wind farms; (2) Adopting advanced ecological survey techniques; and (3) Strengthening systematic studies on ecological impacts at the species and ecosystem levels. Moving forward, it is necessary to study the ecological impacts of PVs and wind farms in depth. Biodiversity assessments should be implemented at the early stages of energy planning, and corresponding mitigation strategies should be adopted.

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Cited: CSCD(2)
  
The application and outlook of wildlife tracking using sensor-based tags in China
Binyue Lu, Kun Li, Chenxi Wang, Sheng Li
Biodiv Sci    2024, 32 (5): 23497.   DOI: 10.17520/biods.2023497
Accepted: 28 March 2024

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Aims: The tagging, positioning, and tracking of animals are crucial approaches to the study of their spatial movements. In China, the application of sensor-based wildlife tracking technologies for free-ranging animals has gained significant traction since the 1980s. These technologies have been widely employed in studies related to wildlife behavior and ecology. To provide a comprehensive overview of the current status of wildlife tracking technologies in China and offer insights into the future, we conducted this review based on comprehensive literature research.

Methods: We systematically searched academic articles on wildlife tracking studies conducted in China from 1970 to 2022. We compiled information of each study, including the type of sensor and tracking technologies used, the taxonomic group of tracked animals, the research field, and the location of study sites.

Results: We collected 519 relevant articles published between 1970 and 2022, encompassing 185 species belonging to 7 classes and 32 orders. The study sites encompassed 34 provinces (including municipalities, autonomous regions, and special administrative regions) in China. We identified four hotspots of tracking studies within the country: the eastern edge of the Qinghai-Tibet Plateau and surrounding mountainous areas, the middle and lower reaches of the Yangtze River, the coastal areas from East to South China, and the Northeast China region. Five senor-based tracking technologies were identified in these studies: radio telemetry (RT) (accounting for 47.7% of the total researches), radio frequency identification (RFID) (3.2%), light-level global geolocator sensor (GLS) (0.6%), satellite tracking based on the Argos Satellite System (ASS) (9.3%) or Global Navigation Satellite System (GNSS) (39.3%). Among these technologies, VHF radio telemetry has had a longer history and more applications in China; ASS and GNSS technologies have been introduced late but have undergone rapid growth, with GNSS emerging as the most widely applied technology in the past 5 years. Radio telemetry is predominantly employed for large- and medium-sized mammals, small mammals, terrestrial birds, amphibians and reptiles. GNSS technology is mainly applied in tracking swimming and wading birds. ASS technology is primarily used in fish studies, while RFID technology is prevalent in tracking invertebrate. The choice of technology varies across different research fields, with GNSS and ASS satellite tracking being the primary technology used in migration studies.

Conclusions: The application scale of sensor-based wildlife tracking technologies in China is experiencing rapid expansion, resulting in a rapid increase of numbers of tagged animals and accumulated data. In the future, wildlife tracking studies in China should put emphases on: (1) deepening the research to examine the underlying ecological mechanisms and broadening the research scales, (2) facilitating interdisciplinary collaboration and fostering technological innovation, (3) advocating for and promoting data sharing and fostering multilateral cooperation, and (4) continuing to advance the development and improvement of domestic tracking equipment and technologies. This will provide reliable scientific supports for wildlife ecology research and resource conservation and management in China.

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Functional diversity and regulation of cuticular hydrocarbons in social insects
Liu Zhixiang, Xie Hua, Zhang Hui, Huang Xiaolei
Biodiv Sci    2025, 33 (2): 24302.   DOI: 10.17520/biods.2024302
Accepted: 20 March 2025

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Background & Aims: Cuticular hydrocarbons (CHCs), widely present in the insect epicuticle, provide significant contributions to many terrestrial insect adaptations. Insect CHCs function primarily in waterproofing, resisting harmful substances, and facilitating chemical communication. Compared to the compositional and functional diversity of CHCs in solitary or subsocial insects, the diversity of social insects offers a valuable source of insights into their unique genetic structure, population composition, and characteristic behavioral patterns.

Progresses: This review characterizes the structures and properties of CHCs that enable particular functions, summarizes their functional diversity, and discusses the influence of both endogenous factors and external elements on the profile variability of CHCs in social insects. Furthermore, potential future research directions are proposed. The CHCs in social insects are regulated through nestmate recognition, caste differentiation, division of labor, social immunity, reproductive state recognition, and inter-specific interactions. Remarkably, some CHCs have been designated for queen pheromones. The CHC profiles of social insects can exhibit remarkable variability to meet the demands of functional differentiation. The synthesis, composition, and content of CHCs in social insects can be influenced by a wide range of internal factors (including gene and hormone levels) as well as extrinsic factors (including diet, gut microbiome, pathogenic organisms, temperature, humidity, ultraviolet radiation, nest materials, etc.).

Prospects: Emerging technologies, such as the quantitative genetic framework, immunohistochemical localization, and fluorescent in situ hybridization, will enable new insights to be obtained into the synthesis, translocation, release, functional diversity, and regulation of CHCs, enhancing our understanding of their role in insect adaptive evolution. The research discussed in this review can provide a theoretical basis for the development of novel technologies to control invasive agroforestry pests.

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Species diversity, ecological characteristics and conservation measures of seahorses (Hippocampus) in China’s waters
Cailian Liu, Xiong Zhang, Enyuan Fan, Songlin Wang, Yan Jiang, Baian Lin, Lu Fang, Yuqiang Li, Lebin Liu, Min Liu
Biodiv Sci    2024, 32 (1): 23282.   DOI: 10.17520/biods.2023282
Accepted: 10 January 2024

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Background & Aims: Seahorses (Hippocampus spp.) are well-known fishes from the family Syngnathidae, mainly due to their unique external morphology and reproductive strategy of male pregnancy. All Hippocampus species, listed in CITES Appendix II in 2002, are under trade regulations internationally. All Hippocampus species (wild populations only) inhabiting in China’s waters were listed as Category II of the National Key Protected Wild Animals in 2021. Through literature review, we (i) updated the species list of seahorses occurring in China’s waters, (ii) summarized their distribution regions, habitat and breeding features, and (iii) presented their threatened categories and threats. Our goal is to inform effective conservation measures for seahorse wild populations in China.

Review findings: In this paper, we reviewed and summarized seahorse species diversity, distributions, habitat uses, reproductive features, threatened categories, and threat factors from various reference sources, including online databases (Fishbase, The Fish Database of Taiwan, GBIF, WoRMS, IUCN), peer-reviewed papers, reports, theses, as well as informative Chinese ichthyographies. A total of 16 seahorse species were recorded in China’s waters, including 5 pygmy seahorses that are no more than 30 mm in body height. Among these, Japanese seahorses (H. mohnikei) were distributed most widely, across China’s all four seas. Crowned seahorses (H. coronatus) were only found in the Bo Hai, while Barbour’s seahorses (H. barbouri), Beibu Bay seahorses (H. casscsio, a new species found in 2016), and Tiger tail seahorses (H. comes) were only found in the South China Sea. Six species were only found in the coastal waters of Taiwan Province. Southern China, including Taiwan, Hainan, Guangdong, Fujian, and Guangxi, has high seahorse species diversity. The habitat uses of seahorses in China’s waters are very diverse, including coral and rocky reefs, seagrass and seaweed beds, muddy and sandy bottoms, gravels, and mangrove meadows. Some species have special requirements for their habitats. According to IUCN, 8 seahorse species were listed as Vulnerable (VU), 2 species were listed as Least Concern (LC), 5 species were listed as Data Deficient (DD), and 1 species was Not Evaluated (NE). The main threats to seahorses are bycatch and habitat destruction.

Recommendations: Seahorses are a special taxonomic group of fishes with high vulnerability, and we propose five recommendations for urgent conservations of seahorses in China. First, the significance of seahorses as flagship species in marine biodiversity conservation should be realized and we need to use them to raise marine-conservation awareness of the general public. Establishing marine protected areas for seahorses and their habitats, and applying other effective area-based conservation measures (OECMs) might also be taken into account. Second, it is known that non-selective fishing gears such as bottom trawling have high seahorse bycatch volume, and the dredge net operations can damage seaweed beds where seahorses inhabit. Therefore, any solution for reducing bycatch, increasing survival rates of seahorses after releasing, protecting habitats and innovating fishing gears are welcome. Third, identifying the key habitats of different seahorse species in China’s waters is very important for establishing protected areas and fisheries spatial management. Currently, such data are very limited. Some key areas we synthesized in this study require national-wide surveys to validate before planning for marine reserves and OECMs of seahorses in China. Fourth, seahorse trade regulation and enforcement should be strengthened, and the management of seahorse utilization should be regulated properly. To this end, techniques to distinguishing wild populations from farmed seahorses should be established as soon as possible before the expansion of seahorse aquaculture.

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Biodiversity credits: Concepts, principles, transactions and challenges
Yunyue Peng, Tong Jin, Xiaoquan Zhang
Biodiv Sci    2024, 32 (2): 23300.   DOI: 10.17520/biods.2023300
Accepted: 11 January 2024

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Aim & Background Unlike biodiversity offsets, which are based on the premise of biodiversity loss, biodiversity credits are an economic instrument that is measurable, traceable, tradable, and generates net biodiversity gains. To address the funding gap for biodiversity and to halt and reverse global biodiversity loss, biodiversity credits have emerged with carbon credits as a blueprint.

Results This paper introduced the conceptual framework of biodiversity credits, providing a detailed explanation of their similarities and differences with biodiversity offsets and carbon credits. Drawing on the foundation of high-quality carbon credits, the paper summarized the principles of biodiversity credits, including their accounting approaches and governance systems. Furthermore, it presented the current global market for biodiversity credits, offering specific practical examples of various trading projects.

Prospects The paper also examined four aspects of problems and challenges related to biodiversity credits: (1) pricing in voluntary markets lacks clear standards; (2) the risk of being a potential greenwashing tool used by enterprises; (3) regulatory and governance systems need safeguards for transparency and community rights; (4) the compatibility with carbon credits is controversial. Looking forward, challenges and opportunities of biodiversity credits co-exist as a critical tool for businesses to achieve their Environmental, Social and Governance (ESG) goals.

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The status and distribution pattern of fish diversity in the Yarlung Tsangpo River
Dekui He, Jinnan Chen, Liuyong Ding, Yiyang Xu, Junhao Huang, Xiaoyun Sui
Biodiv Sci    2024, 32 (11): 24143.   DOI: 10.17520/biods.2024143
Accepted: 11 August 2024

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Aims: The Yarlung Tsangpo River, one of the ten longest rivers in China, spans two major zoogeographic regions of the world: The Palearctic and the Oriental realms. While previous papers have focused on small portions of the river, a basin-wide-scale study to catalog its fish composition, diversity patterns, and species fluctuation is lacking. This study synthesized empirical data from field studies over the past two decades on fish diversity in the Yarlung Tsangpo River, compiled a list of fish diversity in the Yarlung Tsangpo River Basin in China, and analyzed the status of the fish diversity and the main threats to its diversity. The findings provide a scientific foundation for management and conservation of fish diversity in the Yarlung Tsangpo River Basin.

Methods: In total, 66 sections were included in this study. Of them, 58 were actually surveyed in the field, and 8 were collected from literatures; two in the upper reaches, 40 in the middle reaches, and 24 in the lower reaches; 24 in the main stream, 33 in the tributaries, 2 in the lakes, 3 in the tributary reservoirs, and 4 wetlands. These sampling sections (locations) were selected according to their geomorphological characteristics, as well as the accessibility of each location for sampling. The fish investgations were conducted from 2004 to 2023. Methods for collecting fishes included gillnets, shrimp coops, and battery-powered backpack electrofisher. After compiling the data from all of the sites, the degree of endemicity was calculated using the corrected weighted endemism index.

Results: There are 155 native species in 10 orders, 25 families, and 70 genera in the Yarlung Tsangpo River Basin. Out of all of the detected species, 29 species and one genus are endemic to the river. Five species were on China’s Key Protected Species List (Grade II); and 26 species were categorised as threatened (i.e. endangered, vulnerable, or near threatened) on the IUCN Red List of Threatened Species and China’s Biodiversity Red List. The sections with high species richness are located in the middle and lower reaches of the Yarlung Tsangpo River, while the lowest species richness is found in the Great Canyon sections. Fish fauna of the river is dominated by Qinghai-Tibetan Plateau, and South Asian fishes. The Jiaresa-Bangxin section of the Yarlung Tsangpo River Grand Canyon may be the boundary between the two major zoogeographical regions of freshwater fish. By the end of 2023, 30 species of non-native fish in 8 orders, 16 families, and 24 genera had been recorded in the natural water bodies of the Yarlung Tsangpo River Basin. Of these non-native fish species, three species were introduced to different regions within the Yarlung Tsangpo River Basin. In recent years, there has been a rapid increase in the introduction of both native fishes and non-native cold-adapted fishes through the plateau’s drainage systems.

Conclusion: Through cataloging the fish diversity in the Yarlung Tsangpo River Basin, we found that invasion of non-native fishes is the main threat to fish diversity. In the future, we should focus on fish surveys of lakes and tributaries in the lower reaches of the river, strengthen the resources for data integration, and establish a basin-level data management platform. Further, taxonomic research should be strengthened through international cooperation. Additionally, long-term monitoring of fish resources should be implemented as soon as possible to monitor fish diversity and promote conservation in the Yarlung Tsangpo River.

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Status, threats and conservation suggestions on seagrass beds in Guangdong
Chao Zhong, Yaqin Liao, Weijie Liu, Haozhi Sui, Qinghua Chen
Biodiv Sci    2024, 32 (2): 23201.   DOI: 10.17520/biods.2023201
Accepted: 21 November 2023

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Background & Aims Seagrass beds rank among the earth’s most valuable ecosystems, providing extensive ecosystem services to human. Despite their global significance, seagrass beds in the world, particularly in China, face threats from human activities, leading to their degradation. While recent studies in Guangdong Province have increasingly elucidated the distribution characteristics of seagrass beds and threats from multiple sources, a systematic summary of these findings remains limited. Given the anticipated continued pressure of high intensity human activities in the future period of time along the Guangdong coast, a deeper understanding of the challenges faced by seagrass beds in crucial from formulating targeted conservation suggestions aimed at effectively preserving their biodiversity.

Review results In this work, we comprehensively reviewed research results on Guangdong seagrass beds since the 21st century and summarized the information on their distribution of seagrass beds. Through a combination of field investigations and domestic and international research, we identified to Guangdong seagrass beds. The results showed that seagrass was widely distributed along the Guangdong coast, covering an area of 1,540 ha and comprising five species. Halophila ovalis and H. beccarii were both dominant species, while Zostera japonica, Halodule uninervis, Ruppia brevipedunculata had more limited distribution. This paper illustrated the impact of both human and natural factors on growth and distribution of seagrass, and pointed out that human activities such as mariculture, fishing, land-based pollution, marine engineering as primary threats. Moreover, the study acknowledged the significance of species invasion and global climate change.

Perspectives Aiming at threats mentioned above, we proposed conservation suggestions that building upon established protection measures. These recommendations include strengthening scientific research on seagrass bed ecosystem, improving the ability of survey and surveillance on seagrass, establishing a regulatory system for protecting seagrass, managing and controlling pollutant emissions, reinforcing ecological restoration of seagrass beds, and launching popular science activities and awareness campaigns.

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Effects of urbanization on animals: From community to individual level
Hongyu Niu, Lu Chen, Hengyue Zhao, Gulzar Abdukirim, Hongmao Zhang
Biodiv Sci    2024, 32 (8): 23489.   DOI: 10.17520/biods.2023489
Accepted: 18 July 2024

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Background & Aims: Urbanization is a global process accompanied by rapid environmental changes, which accelerates the evolutionary process of urban organisms and reshapes community structure and species interactions in urban ecosystems. In this paper, we reviewed relevant researches on the effects of urbanization on animals at community, population, and individual level. Then we summarized both the advances and shortcomings in the scientific urbanization literature. Finally, we provided an outlook for research in the related fields.

Review Results: Currently, relevant studies primarily reflect the level of urbanization by using the proportion of impervious area or the urban-rural gradient. By replacing time with space, the studies explore the changing trend of species composition and diversity, population demographics, genetic structure of animals, biological traits, phenology, and behavior under urbanization. Most studies focus on descriptive analysis, while mechanism-based research and applied research are relatively lacking.

Prospect: (1) Based on the observed phenomena under urbanization, future studies should conduct controlled experiments to identify the key factors affecting different animals under urbanization and explore the molecular genetic basis of urban biological evolution with molecular methods. (2) Particular attention needs to be paid to adaptive species in urban grey habitats, which are often associated with humans, pets, or food. Understanding how urban species adapt may provide direction and help predict the future effects of urbanization on animals, including human beings. (3) Since complex interspecific interaction networks can buffer the impacts of the change of animal abundance and behavior on ecological services such as pollination, seed dispersal, and pest control to a certain extent, the effects of urbanization on multitrophic networks should be studied further. (4) Finally, basic research on animal diversity and genetic structure should be extended to urban ecological planning and restoration.

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Biodiversity conservation in China: Policy evolution, main measures and development trends
Yingli Cai, Hongge Zhu, Jiaxin Li
Biodiv Sci    2024, 32 (5): 23386.   DOI: 10.17520/biods.2023386
Accepted: 26 April 2024

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Background & Aims: Biodiversity conservation stands as a critical imperative for China’s ecological security and the advancement of an ecological civilization. It also represents a vital public welfare endeavor crucial for fostering sustainable development. Despite significant efforts, China’s biodiversity conservation efforts continue to confront substantial challenges, including habitat fragmentation, declining habitat quality, and the proliferation of invasive species. Existing biodiversity conservation policies have thus far fallen short of effectively reversing the overarching trend of biodiversity loss. In light of these challenges, this paper seeks to explore the visionary objectives of biodiversity conservation in China. It analyzes the evolutionary trajectory of China’s biodiversity conservation policies, highlights key measures implemented, and outlines the development trend of biodiversity conservation development in the country.

Policy evolution: To reconcile the delicate balance between conservation and development imperatives, the state has implemented a diverse array of plans, strategies, notifications, and measures. Beginning with the protection of individual species, China has progressively expanded and refined the scope, objectives, and strategies of biodiversity conservation, gradually crafting a comprehensive policy framework for biodiversity conservation. Reflecting the evolving focus on conservation targets, China’s biodiversity protection has transitioned from single-species protection and classification-based approaches to a more holistic and integrated conservation paradigm. Furthermore, biodiversity conservation efforts have been systematically integrated into various national plans, facilitating comprehensive protection across diverse ecosystems and species. Consequently, China’s biodiversity conservation journey can be delineated into three distinct stages: the nascent phase (pre-1994), the rapid development stage (1994‒2010), and the ongoing in-depth improvement stage (2010‒present).

Main measures: In general, China has implemented a variety of conservation and restoration measures, resulting in notable successes across multiple fronts. These measures can be broadly characterized as direct protection, prevention and control, and sustainable use. Initially, biodiversity conservation efforts primarily focused on direct protection measures. However, over time, there has been a discernable shift towards a more comprehensive approach, encompassing a combination of direct conservation strategies, prevention, control measures, and sustainable utilization practices.

Development trends: To advance the establishment of a robust biodiversity conservation policy framework and elevate the effectiveness of biodiversity conservation efforts, it is imperative to achieve alignment, or the “three fits”, between biodiversity conservation and territorial spatial planning, the advancement of information technology, and the formulation of national strategies. By ensuring coherence and synergy, it is envisaged that this approach will facilitate the attainment of biodiversity conservation objectives and realize the vision of harmonious coexistence between humans and nature by 2050.

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Cited: CSCD(3)
  
Discussion on the plant ex situ conservation
Jin Chen, Xi Yang
Biodiv Sci    2024, 32 (2): 24064.   DOI: 10.17520/biods.2024064
Accepted: 01 March 2024

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Aims Plant ex situ conservation will be a core task in the on-going construction of the national botanical garden system of China. However, many issues regarding the status and role of plant ex situ conservation in biodiversity conservation, as well as how to set up the goals for plant ex situ conservation in China, are still under discussion. The objective of this study is to address these unresolved issues.

Methods The study utilizes literature reviews and international conventions such as the “Kunming-Montreal Global Biodiversity Framework” and the upcoming “Complementary Actions Related to Plant Conservation to Support the Implementation of the Kunming-Montreal Global Biodiversity Framework”.

Results Through a review of the development history and achievements of plant ex situ conservation over the past 40 years, this paper clarifies some doubts and misconceptions about plant ex situ conservation. Furthermore, this article proposes the goals of plant ex situ conservation in China, as “Establish programs to ensure ALL threatened plant species are effectively conserved by ex situmethodologies, aiming to achieve genetically diverse representations”.

Conclusion The establishment of the national botanical garden system in China presents an opportunity to enhance plant ex situ conservation efforts. By improving the quality of processes involved in ex situ conservation program, China can elevate its conservation practices to a higher level.

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Cited: CSCD(1)
  
Research progress on the impacts of urbanization on bats in China
Jiangtian Geng, Fei Wang, Huabin Zhao
Biodiv Sci    2024, 32 (8): 24109.   DOI: 10.17520/biods.2024109
Accepted: 14 July 2024

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Background & Aim: There are more than 140 species of bats in China, accounting for about 10 percent of the world’s bat species. China is one of the countries with the richest bat species diversity in the world. With the development of urbanization, the species diversity of bats in China has been seriously threatened. This paper aims to discuss the current state of research on bats in China under the background of urbanization, and then, based on the threats of urbanization factors faced by bats in China, to propose targeted conservation recommendations.

Progresses: The review preliminarily defines urban bats as those whose life history is not directly controlled by humans, but whose stages such as foraging, roosting, and migration are completed in urban and surrounding areas affected by urbanization. Thus, their morphological, physiological, behavioral, and genetic adaptive characteristics are influenced by the urbanization In the process of urbanization, bats face a range of threats, including human hunting, human buildings, roads, light pollution, noise pollution, and chemical pollution; this is mainly manifested in three aspects in China: loss of habitat, utilization of biological resources, and disturbance of habitat. Despite this, preliminary bibliometric analysis indicates that research on the impacts of urbanization on bats in China is relatively lacking, and this field needs more attention.

Conservation Measures: In view of the significant impact of urbanization threats on the existence of bats in China and the scarcity of related research, it is necessary to strengthen the protection of bats in the process of urbanization in China. We suggest that research in the fields of taxonomy and conservation genomics should be intensified, special surveys for urban bats should be conducted, and the protection of bat habitats should be valued. As a result, the management of light and noise pollution should be strengthened, legislative protection should be carried out for bats that are unique to China and have a higher level of threat, and science popularization education related to bats should be carried out for the public, i to better protect bats in the process of urbanization.

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Comparisons between non-native species invasion and native species range expansion
Lixia Han, Yongjian Wang, Xuan Liu
Biodiv Sci    2024, 32 (1): 23396.   DOI: 10.17520/biods.2023396
Accepted: 25 January 2024

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Background & Aim: In response to the rapid global change, a growing number of species have been undergoing range shifts, which includes two main processes: one is the non-native species invasion mediated by human activities, and the other is the natural range expansion of native species. There are both similarities and differences between these two processes. It is thus critically important to distinguish their similarities and differences to develop scientific strategies for invasive species prevention and native species conservation.

Progresses: By comparing the non-native species invasion and native species range expansion, we found that both non-native species invasion and native species range expansion are increasing under global change. However, there are obvious differences in potential drivers, spatial-temporal scales, occurring rates, species traits predicting the process, and impacts on new ranges between the two processes. The non-native species invasion usually occurs over long distance with the aid of human activity, spreads rapidly after establishment, high predictive ability of species traits, and poses a serious threat to local biodiversity. By contrast, range expansion of native species usually occurs at smaller spatial scales, slower occurring rates, and lower predictive ability of species traits, thus generally has less impacts on new regions.

Prospects: As it is difficult to accurately determine the potential impacts of new-arrival species on recipient habitats, long-term monitoring and studies assessing the biological and ecological effects of these two processes on local population dynamics, community structure, and ecosystem function are needed, which is important to develop schemes of non-native species mitigation and native biodiversity conservation.

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Cited: CSCD(2)
  
Advances in tardigrade diversity, distribution characteristics and ecological functions
Chen Dingsong, Liu Zikai, He Ziyang, Chen Weidong
Biodiv Sci    2025, 33 (2): 24406.   DOI: 10.17520/biods.2024406
Accepted: 26 February 2025

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Background: Tardigrades, commonly known as water bears, are microscopic invertebrates inhabiting diverse environments across marine, freshwater, and terrestrial ecosystems. As essential components of microfauna communities, they are renowned for their extraordinary extremotolerant adaptability and occupy multiple trophic levels within micro-food webs, indicating their significant ecological roles. Despite significant advancements made in understanding tardigrade biodiversity, identification methodologies, physiological and ecological traits recently, a comprehensive summaries remains lacking.

Bibliometric analyses & Perspective: Through bibliometric analyses of global tardigrade research over the past three decades, this review systematically summarizes the research progress in the new species discovery, identification methods, distribution characteristics, and ecological functions of tardigrades. The primary findings encompass: (1) Up to 2024, 1,488 documented tardigrade species inhabit a wide range of aquatic and terrestrial ecosystems, including moss, soil, marine environments, polar regions, and even anthropogenic habitats, with new species being continuously discovered. (2) Current identification methods remain predominantly morphology-based, while standardized molecular tools for phylogenetic resolution are critically underdeveloped, severely constrain taxonomic advancements. (3) We describe characteristics in aquatic ecosystems and unique adaptive mechanisms to global change stressors including climate warming and atmospheric nitrogen deposition. (4) Preliminary summaries reveal their ecological roles in micro-food webs through interactions with meiofauna and microbial communities.

Future prospects: We propose three critical research priorities: (1) Emphasizing the need to improve molecular biology research methods; (2) Exploring the distribution characteristics across different ecosystems on large spatial and long-term temporal scales; (3) Elucidating their position in micro-food webs and ecological functions.

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Application of passive acoustic monitoring in Chiropteran research
Yingying Liu, Lixin Gong, Hao Zeng, Jiang Feng, Yongjun Dong, Lei Wang, Tinglei Jiang
Biodiv Sci    2024, 32 (10): 24233.   DOI: 10.17520/biods.2024233
Accepted: 05 December 2024

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Background: Passive acoustic monitoring (PAM) technology has become increasingly significant in wildlife research due to its non-invasive nature and capacity for continuous monitoring. A key taxonomic group for biodiversity and environmental monitoring using PAM are the order Chiroptera, commonly known as bats, with their unique echolocation abilities, nocturnality, and high sensitivity to environmental changes.

Progress: This review aims to comprehensively explore the applications of PAM in Chiropteran research and note the scientific and ecological breakthroughs that this new tool facilitates. We analyze the advantages and limitations of PAM, and summarize methods for effectively collecting and processing acoustic data to estimate and monitor bat diversity, activity patterns, population dynamics, habitat selection, and distribution. The review concludes with case studies from the literature that compare the impact of different environmental factors on bat diversity and activity, and that discuss how these variables affect data collection.

Prospects: This review concludes its assessment by noting the challenges that PAM faces in practical applications; by exploring the future prospects of the technology and its potential contributions to biodiversity conservation; and by proposing future research directions including technological innovation, citizen science involvement, and monitoring strategy optimization. These suggestions will help further advance the application of PAM technology in bat conservation and management by contributing to the protection of biodiversity.

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Cited: CSCD(1)
  
Research progress of diet composition and its research methods for Père David’s deer
Haolin Wang, Huaisheng Zhang, Jianqiang Zhu, Zhongyi Chen, Yulin Ke, Tao Yang, Hui Chen
Biodiv Sci    2024, 32 (1): 23057.   DOI: 10.17520/biods.2023057
Accepted: 29 November 2023

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Background & Aim: Milu (Père David’s deer, Elaphurus davidianus) is a national key protected wild animal. Since its reintroduction in 1980, research on the diet composition of Milu has been a focus of researchers. We summarized the main feeding plants of Milu in the Beijing Milu Ecological Research Center, the Dafeng Milu National Nature Reserve, and the Shishou Milu National Nature Reserve. And we reviewed the common research methods of diet composition for animal including direct observation, utilization method, stomach content analysis, fecal microanalysis, stomach content or fecal DNA analysis and stable isotope technology and compared in terms of temporal scale, diet resolution, diet from the consumed stage, major strengths and major limitations. And, we analyzed the effects of ecological factors such as self-factors, plant nutrients and availability, and human activities on the diet composition of Milu. The analysis of the diet composition of Milu and common diet composition research methods aims to clarify the current progress of Milu diet composition research for promoting ex-situ conservation and natural return of Milu.

Review results: The main food source of Milu is plants. The food selection of Milu is influenced not only by self-factors, but also by the nutrient content and availability of feeding plants and anthropogenic factor. Physiological variation and alteration of energy requirements due to self-factors can influence the diet composition of the deer. Plant nutrients including crude protein, soluble sugars, and fiber are important factors influencing diet composition. Plant availability and anthropogenic factors further influence diet composition by changing food diversity and abundance. The comparative analysis of common diet composition research methods shows that different methods reflect different time scales and food resolutions in resolving diet composition, and there are corresponding advantages and limitations in the face of large endangered ungulates such as Milu.

Perspectives: We recommend that researchers should clarify the purpose and target population of the study. On this basis, researchers should reasonably assess the strengths and limitations of the available research methods, select appropriate sampling and data analysis methods to establish a reasonable diet composition research program. In future studies on the food composition of Milu, should focus on integrating the results of related studies on Milu, using a combination of methods to analyze diet composition, and comprehensively analyzing the food selection mechanism of Milu. This will not only guide the response of Milu to habitat fragmentation, wetland degradation and anthropogenic disturbance during reintroduction, but also further promote the development of Père David’s population and long-term conservation efforts.

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A report on newly described taxa of Hemiptera and other 28 orders of Insecta in China (2022‒2023)
Liyun Jiang, Jing Chen, Zhaoxu Li, Yupeng Nan, Gexia Qiao
Biodiv Sci    2024, 32 (11): 24411.   DOI: 10.17520/biods.2024411
Accepted: 13 January 2025

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Aims: This study aims to compile and update information on China’s newly described taxa of Hemiptera and 28 other orders of Insecta (excluding Coleoptera, Diptera, Lepidoptera, and Hymenoptera) from 2022 to 2023.

Methods: We summarized the list of type specimens and bibliographies for China’s newly described taxa of Hemiptera and 28 other insect orders during 2022-2023. The preservation locations of type specimens and the journals in which the new species were published were also analyzed.

Results: From 2022 to 2023, a total of 727 new taxa were published for Hemiptera and 28 other insect orders in China, comprising 668 new species/subspecies, 58 new genera and 1 new family. Among these, Hemiptera, Orthoptera, and Plecoptera were the top three orders with the highest number of new taxa. Specifically, Hemiptera had 252 new species, 22 new genera, and 1 new family; Orthoptera had 183 new species and 19 new genera; and Plecoptera included 54 new species and 1 new genus. No new taxa were reported for Mantophasmatodea, Zoraptera, Isoptera, and five other orders during this period. Based on an analysis of provincial administrative regions, hotspots for new taxa discovery were concentrated in Southwest China (Yunnan, Guizhou, Xizang and Sichuan), South China (Guangxi, Hainan and Guangdong), Central China (Hunan and Hubei), and Southeast China (Taiwan, Zhejiang, and Fujian). Yunnan led with 338 new species, representing 50.60% of the total, followed by Guangxi with 115 new species (17.22%), and Guizhou, Xizang, and Sichuan with 90, 88, and 79 new species, respectively. In total, 5,252 type specimens of the 668 new species and subspecies were deposited across 70 preservation facilities. Over 95% of holotypes and paratypes are preserved in 40 universities and 11 research institutions in China, while less than 5% of paratypes are deposited in 3 universities and 12 research institutions abroad. Type specimens are predominantly stored in universities, followed by research institutes and museums. These newly described taxa were published in 320 articles across 35 journals. Over 70% of these articles appeared in Zootaxa, ZooKeys and European Journal of Taxonomy. The Chinese journal Entomotaxonomiaaccounted for 4.69% of the articles, while Systematic Entomology and 24 other journals each published one relevant article.

Conclusion: This study provides a timely update on the biodiversity data of Hemiptera and 28 other insect orders in China for 2022-2023. It plays a crucial role in accelerating the development of data-sharing platforms and enhancing the understanding of insect biodiversity.

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A dataset on the morphological, life-history, and ecological traits of cetaceans worldwide
Zhang Songqi, Lu Yi, Chen Bingyao, Yang Guang, Wang Yanping, Chen Chuanwu
Biodiv Sci    2025, 33 (2): 24442.   DOI: 10.17520/biods.2024442
Accepted: 02 March 2025

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There are 94 cetacean species worldwide, which represent one of the most enigmatic and threatened groups among mammals. Throughout their transition from land to water, cetaceans have evolved numerous morphological, life history, and ecological traits that enhance their adaptability to aquatic environments. However, a comprehensive global database of cetacean ecological characteristics is still lacking. Our study systematically reviews books, literature, and other data resources to collect and compile cetacean characteristic data, including 15 morphological traits, 12 life-history traits, and 11 ecological traits. Based on the collected data, we quantified the trait completeness for each species and employed phylogenetic linear regression model to explore the factors influencing the ratio of data completeness. The completeness of the morphological traits ranges from 72.15% to 100.00%, life history traits from 17.72% to 100.00%, and ecological traits from 25.32% to 100.00%. The regression analyses showed that species described earlier and inhabiting nearshore habitats tend to exhibit higher data completeness. This dataset provides essential foundational information for research in cetacean ecology, conservation biology, and evolutionary biology. It also serves as a significant platform for data sharing and communication in regional and global cetacean conservation efforts.

Database/Dataset Profile

Title A dataset on the morphological, life-history, and ecological traits of cetaceans worldwide
Data author(s) Songqi Zhang, Yi Lu, Bingyao Chen, Guang Yang, Yanping Wang, Chuanwu Chen
Data corresponding author Chuanwu Chen (chencw@nnu.edu.cn)
Time range Until December 2024
Geographical scope Worldwide
File size 1.4 MB
Data format *.xlsx
Data link https://doi.org/10.57760/sciencedb.j00152.00007
https://www.biodiversity-science.net/fileup/1005-0094/DATA/2024442.zip
Database/Dataset composition The dataset consists of one data file and one data description file, encompassing 38 species traits of 94 cetaceans worldwide.
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A dataset on the plant growth form and life form of vascular plants in China
Bohan Zheng, Xinyao Chen, Jian Ni
Biodiv Sci    2024, 32 (7): 23468.   DOI: 10.17520/biods.2023468
Accepted: 24 June 2024

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Plant growth form and life form are important morphological traits for understanding the response and adaptation of plants to environmental changes and are of great significance for the study of the relationship between plants and their environment and ecosystem functions. They are also vital traits in understanding of the geographic distribution pattern of plants and the mechanism of the formation and maintenance of biodiversity. According to the Flora Reipublicae Popularis Sinicae and Flora of China, the descriptions of plant growth form and life form in the current edition of Flora Reipublicae Popularis Sinicae are characterized by non-uniform classification standards, in which some of the information is missing, incorrect or ambiguous. In this paper, based on the information of plant traits in national and local flora literature and field surveys, we revised the growth form and life form traits of vascular plants, and established a dataset of the growth form and life form of vascular plants in China. The dataset consists of 35,329 vascular plant species, including plant names, growth form and life form traits, and their data sources. The plant names included names both from the Flora Reipublicae Popularis Sinicae, Flora of China, and from the Catalogue of Life China: 2023 Annual Checklist, to allow the readers to cross-check the differences between both taxonomic systems. Based on the degree of stem lignification, plants were classified into two groups: woody plants (12,600 species, 35.7%) and herbaceous plants (22,729 species, 64.3%). The woody plants were primarily dominated by medium shrub growth form (2,917 species, 23.2%) and evergreen life form (7,107 species, 56.4%). The herbaceous plants were dominated by the forb growth form (19,900 species, 87.6%) and the perennial life form (19,554 species, 86.0%). Among the woody plants, tree species were dominated by the families Lauraceae and Fagaceae, and of shrub species by Ericaceae, Fabaceae, and Rosaceae; evergreen species were dominated by Ericaceae and deciduous species primarily consisted of Rosaceae. Among herbaceous growth form, the forbs were dominated by Asteraceae, and the grasses by Poaceae. The annual herbaceous plants were dominated by Poaceae, biennial species by Boraginaceae, and perennial species by Asteraceae. This dataset covers all the vascular plant species and their growth form and life form in China, and can provide a data foundation for the study of plant traits in future research endeavors.

Database/Dataset Profile

Title A dataset on the plant growth form and life form of vascular plants in China
Data author(s) Bohan Zheng, Xinyao Chen, Jian Ni
Data corresponding author Jian Ni (nijian@zjnu.edu.cn)
Time range 1959-2023
Geographical scope China
File size 7.58 MB
Data volume Number of records in two file: 35,329
Data format *.xlsx
Data link https://www.scidb.cn/s/JZfIjm
https://doi.org/10.57760/sciencedb.10903
https://www.biodiversity-science.net/fileup/1005-0094/DATA/2023468.zip
Database/Dataset composition The dataset consists of one data file and one data description file, data file including two work sheets: 1. A dataset on the plant growth form and life form of vascular plants in China (Chinese version); 2. A dataset on the plant growth form and life form of vascular plants in China (English version).
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Cited: CSCD(2)
  
Species diversity and maintenance mechanisms of benthic macroinvertebrate assemblages in the Xijiang River
Xue Bai, Zhengfei Li, Yang Liu, Junqian Zhang, Duopeng Zhang, Xin Luo, Jiali Yang, Lina Du, Xuankong Jiang, Ruiwen Wu, Zhicai Xie
Biodiv Sci    2024, 32 (7): 23499.   DOI: 10.17520/biods.2023499
Accepted: 24 June 2024

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Aims The Xijiang River, renowned for its rich freshwater biodiversity and endemism, presents an intriguing yet understudied ecosystem. This study aims to elucidate the species diversity patterns and underlying mechanisms maintaining macroinvertebrate communities in this mega river. Drawing from published literature and an extensive field survey conducted from 2021 to 2023, our objectives include compiling a comprehensive species checklist, identifying ecological drivers shaping community structure, and proposing conservation strategies.

Methods Macroinvertebrates were sampled from key water bodies within the Xijiang River, including main stream, tributaries, and plateau lakes from the years 2021 to 2023. One-way ANOVA was employed to analyze species diversity indices across different water bodies. PERMANOVA (permutational multivariate analysis of variance) and PCoA (principal co-ordinates analysis) were used to assess community structure variation, while canonical correspondence analysis and variation partitioning identify potential key factors influencing macroinvertebrate community organization.

Results A total of 704 species from 437 genera, representing 150 families across 10 orders and 5 phyla, were documented (combining 506 historical records with 352 findings from 2021 to 2023). The proportion of species endemic to China reaches as high as 26% of the total number of species. The average density and biomass in the present survey period were 437.53 ind./m2 and 38.65 g/m2, respectively. Tanypus sp., Glyptotendipes sp., Parafossarulus striatulus and Corbicula flumineaemerged as the dominant species. Species richness and diversity indices were highest in tributaries, followed by the main stream and lakes. Canonical correspondence analysis (CCA) revealed that a combination of environmental factors (e.g., altitude, conductivity and chemical oxygen demand with permanganate) and spatial factors jointly influenced macroinvertebrate community structure. Moreover, variation partitioning highlighted the dominance of environmental factors in tributaries and lakes, while spatial factors predominantly influenced main stream communities.

Conclusion This study presents the most comprehensive inventory of macroinvertebrates in the Xijiang River to date, showcasing its significance as a global biodiversity hotspot. Despite the region’s rich macroinvertebrate biodiversity, anthropogenic pressures have led to a decline in species richness. To safeguard and restore macroinvertebrate diversity and endemism, proactive conservation measures are imperative. Strategies should include curbing overfishing, regulating illicit mining practices, restoring natural hydrological patterns and riparian zones, mitigating point and non-point source pollution, and preventing the encroachment of non-native species.

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Species richness patterns of mammals and birds and their drivers in the Nanling Mountain Range
Liyuan Wang, Huijian Hu, Jie Jiang, Yiming Hu
Biodiv Sci    2024, 32 (1): 23026.   DOI: 10.17520/biods.2023026
Accepted: 17 January 2024

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Aims: The Nanling Mountains are a prominent mountain range serving as a natural geographical boundary in southern China and are recognized as one of the world’s biodiversity hotspots. However, past studies on species richness in the Nanling Mountains have primarily focused on specific taxa and at localized scales. This has led to a dearth of research concerning the comprehensive spatial patterns of fauna across the entire Nanling region. The objective of this study is to identify the large-scale patterns and drivers of mammalian and avian species richness and offer insights to support the conservation of Nanling’s biodiversity.

Methods: Using geographical data for 123 mammal species and 524 bird species, we investigated the distribution of species richness within the Nanling Mountains. Additionally, we employed path analysis (PA) and spatial error models to disentangle the impacts of various predictors (climate, productivity, human activity, habitat heterogeneity, and elevation) on species richness.

Results: The hotspot of mammal species richness was in the southwestern part of the Nanling region, with a decline in richness observed from west to east. Avian species richness was highest in the southeast of Nanling, gradually decreasing from southeast to northwest. The path analysis and spatial error models demonstrated that temperature- related factors exerted the most significant influence on the spatial distribution patterns of species richness for both mammalian and avian species. Two temperature-related factors had contrasting effects on species richness. The average annual temperature had a negative impact on mammals but a positive impact on birds; however, the annual range of temperature had a positive impact on mammals but a negative impact on birds.

Conclusions: Our findings highlight the contrasting spatial distribution patterns of mammalian and avian species richness in the Nanling Mountains. The differential impact of average annual temperature and the annual range of temperature on birds and mammals may arise from physiological adaptability and behavioral strategies.

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Cited: CSCD(1)
  
Distribution pattern of bryophyte diversity and environmental impact factors in urban parks of Shanghai
Xiangzhang Wu, Fumin Lei, Yiyi Shan, Jing Yu
Biodiv Sci    2024, 32 (2): 23364.   DOI: 10.17520/biods.2023364
Accepted: 24 January 2024

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Aims Urban parks are very rich in biodiversity and play an important role in conservation. Bryophytes are an important component of this biodiversity, but due to their small size and the challenges associated with their identification, they tend to be overlooked. Research on these nonvascular plants is therefore comparatively lacking. We aim to strengthen the comprehensive understanding of urban biodiversity by including robust information on bryophytes and promote urban conservation.

Methods Based on the literature data and ecological survey data, we integrated the list of bryophytes from 35 sample points in central urban areas and suburb areas of Shanghai. We applied cluster analysis to group the parks and compared the similarity of bryophytes in urban and suburban areas. Canonical correspondence analysis (CCA) and hierarchical partitioning methods were used to quantitatively study the relationship between environmental factors and the distribution of bryophyte species diversity.

Results The results showed that 164 species of bryophytes belonging to 74 genera in 34 families lived in 35 parks. This grouping included 9 species belonging to 8 genera in 7 families of liverworts and 155 species belonging to 66 genera in 27 families of mosses. Twelve of these species are endemic to China and four species are considered Near Threatened. According to the results of cluster analysis, these 35 parks can be divided into two groups, distinguished by population density, distance to the city center, distance to the primary highway, and park area. The Jaccard similarity coefficients of families, genera and species in urban and suburban areas were 0.94, 0.89, and 0.30, respectively, indicating that the species composition of the two areas had their own characteristics. The hierarchical partitioning method showed that the environmental factors that explained the distribution pattern of bryophyte diversity in urban parks were, from high to low, DOP (population density), AGI (age of the park), DIS2 (distance to the city center), DIS1 (distance to the primary highway), LPT (proportion of lake area to park area), FPT (proportion of forest area to park area), and AREA (park area).

Conclusion On the whole, the species diversity of bryophytes in Shanghai’s urban parks is rich and there are some differences in the species composition between urban parks and suburban parks. Both regions play an important role in the conservation of bryophyte diversity. We revealed the effects of different environmental factors such as DOP, DIS1 and FPT on the distribution pattern of bryophyte diversity in urban parks, in order to strengthen the comprehensive understanding of urban bryophyte diversity and promote the protection of urban ecosystems and bryophyte diversity.

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Vascular epiphyte diversity and the correlation analysis with host tree characteristics: A case in a mid-mountain moist evergreen broad-leaved forest, Ailao Mountains
Yanyu Ai, Haixia Hu, Ting Shen, Yuxuan Mo, Jinhua Qi, Liang Song
Biodiv Sci    2024, 32 (5): 24072.   DOI: 10.17520/biods.2024072
Accepted: 28 April 2024

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Aims: Vascular epiphytes have a significant contribution to maintaining biodiversity, carbon storage, ecological hydrology and nutrient flux in a forest ecosystem. Assessing the diversity pattern of epiphytes thus can provide a basis for community assembly mechanism, conservation and resource utilization of epiphytes in the context of global change. In this context, we aimed to analyze the species and phylogenetic diversity including the phylogenetic structure of vascular epiphytes, and their correlations with host characteristics in the subtropical evergreen broad-leaved forest in the Ailao Mountains, Southwest China.

Methods: Using a built-in canopy crane, we observed 311 individuals of dominant host trees in the 1.44 ha permanent plot and recorded the occurrence of vascular epiphytes including host tree identity, diameter at breast height (DBH) and tree height. Afterward, species richness (S), phylogenetic diversity (PD) and phylogenetic structure (net nearest taxa index (NTI) and net relatedness index (NRI)) of vascular epiphytes and their correlation with DBH, height and species of host trees were evaluated.

Results: A total of 62 species of vascular epiphytes belonging to 26 families and 44 genera were found. Remarkably, significant positive correlations were found between the epiphyte species richness and PD with the host DBH and height (P < 0.001). No significant correlations were detected between standard phylogenetic diversity (SES.PD) and species richness. The species richness and PD of epiphytes in Stewartia pteropetiolata were significantly lower than in other host species (P < 0.001). However, SES.PD significantly increased with the increase in host DBH (P < 0.05) and decreased with the increase in host height (P < 0.05). The phylogenetic structures of epiphytes on the Castanopsis wattii and Michelia floribunda were divergent, while epiphytes on the Lithocarpus xylocarpus and Stewartia pteropetiolata were clustered. Epiphytes on the other host trees did not show any phylogenetic structural pattern.

Conclusion: Host tree characteristics, including host size and host species differences, are the key factors that maintain the diversity pattern of vascular epiphytes. These results can provide a solid foundation for future analysis of the pattern and maintenance mechanism of epiphyte diversity from multiple dimensions and perspectives.

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Chinese enterprises’ biodiversity disclosure index construction and financing effects
Xinmeng Tang, Tao Qin
Biodiv Sci    2025, 33 (1): 24264.   DOI: 10.17520/biods.2024264
Accepted: 04 November 2024

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Backgrounds & Motivations: The financial gap in addressing biodiversity loss is considerable, highlighting the need for the involvement of enterprises and financial institutions in biodiversity protection to provide necessary funding for biodiversity risk management. However, the information regarding to biodiversity in reports from Chinese listed enterprises remains limited, often lacking substance and credibility. It is imperative for enterprises to establish a biodiversity information disclosure mechanism that signals low biodiversity risk to financial and capital markets, thereby enhancing their financing capabilities and levels.

Methods: This study calculates the biodiversity information disclosure index for Chinese enterprises based on an analysis of 11,867 enterprise social responsibility and environmental, social and governance (ESG) reports from 1,714 listed enterprises between 2006 and 2022, utilizing internet crawling technology for data collection. Employing quantitative analysis methods, the research examines the current status and primary issues related to biodiversity disclosure, ultimately constructing an econometric model to explore the financing effects of biodiversity information disclosure from the perspectives of financing constraints, costs, and outcomes.

Results: The findings indicate a continuous increase in both the number and proportion of enterprises disclosing biodiversity information in China, demonstrating a stable growth trend with modest annual increases. However, challenges persist, including low disclosure quality, heightened industry polarization, and significant heterogeneity among enterprise types. Furthermore, biodiversity information disclosure exhibits significant effects on financing. Specifically, each increasing unit in enterprise biodiversity information disclosure can effectively reduce enterprise financing constraints by 2.02% to 5.07%, lower the cost of enterprise debt financing by 2.51% to 2.78%, lower the cost of enterprise equity financing by 1.55% to 1.83%, and facilitate adjustments to the enterprise financing structure, thereby decreasing (increasing) the proportion of debt (equity) in financing by 2.19%.

Policy Implications & Contributions: In light of these findings, policy recommendations are proposed in the study, including the implementation of financing incentive mechanisms, the establishment of standardized disclosure protocols, the monetization of biodiversity value, and an emphasis on disclosure trends among non-key industries. These recommendations are designed to enhance enterprise engagement in biodiversity protection and to mobilize enterprise resources towards the promotion of biodiversity-friendly practices within industry development.

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Community structure of macrobenthos and ecological health evaluation in the restoration area of the Yellow River Delta wetland
Yanmei Ni, Li Chen, Zhiyuan Dong, Debin Sun, Baoquan Li, Xumin Wang, Linlin Chen
Biodiv Sci    2024, 32 (3): 23303.   DOI: 10.17520/biods.2023303
Accepted: 27 February 2024

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Aims: The internationally important wetland biodiversity conservation project of the Yellow River Delta started in 2019. This study used macrobenthos community characteristics and their relationship with environmental factors to understand the health status of this ecosystem and assess the succession stage and repair effect after three years of restoration.
Methods: This study investigated the macrobenthos and environmental factors in the restoration area in May (spring), August (summer) and October (autumn) in 2022, respectively. The community structure, biodiversity, and their relationships with major environmental factors were analyzed by classical taxonomy, biodiversity index, cluster analysis, multi-dimensional scaling analysis, and Spearman correlation analysis.
Results: A total of 16 macrobenthic species belonging to 5 phyla, 6 classes and 15 families were collected in spring, summer and autumn. Insecta species were found dominant in species composition. The number of macrobenthic species in the Yellow River Delta wetland restoration area showed an increasing trend during the survey period, with Chironomidae sp., Radix swinhoei, and Hippeutis cantori becoming the dominant species in the area, as well as key characteristic and differential species in the community structure. The species density was significantly correlated with indicators such as specific conductance, salinity, total carbon, ammonium nitrogen, and nitrite nitrogen (P < 0.01). The rapid biological comprehensive evaluation index evaluated the restoration area as the “sub-health” state.
Conclusion: The restoration area is developing towards a healthier and more orderly direction but is currently in a “sub-health” state, indicating a need for continued restoration work. Ecological succession is a slow process which requires long-term ecological monitoring in our research area, including an analysis of the reconstruction process of the disturbed macrobenthic community structure in the Yellow River Delta ecological restoration area, and an exploration of the regular changes in ecological succession.

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Cited: CSCD(1)
  
Comparative floral nectar attributes in four Swertia species (Gentianaceae)
Shijia Wen, Minxue Deng, Ding Wu, Zhiyong Wang, Zongxin Ren
Biodiv Sci    2024, 32 (1): 23297.   DOI: 10.17520/biods.2023297
Accepted: 28 November 2023

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Aims: Floral nectar secretions at interspecific and intraspecific levels, as well as the variation among different flowers within a plant, influence pollinator attraction. By impacting pollinator visitation patterns, these factors consequently influence pollination effectiveness and plant reproductive success. However, our understanding of the variability in floral nectar production is limited by a lack of quantitative measurements.

Methods: In this study, we selected four sympatric species within the genus Swertia (Gentianaceae), Swertia bimaculata, S. cincta, S. kouitchensis and S. punicea, to study variations in floral nectar attributes. We compared volume, sugar concentration and sugar content (weight) for flowers under two treatments: (1) flowers bagged for 24 hours and (2) freshly opened flowers in natural field conditions. We examined differences among neighboring flowers to test floral nectar variations across and within individual plants.

Results: We found that floral nectar attributes were significantly different among the studied species. Except for sugar concentration in S. bimaculata and S. kouitchensis, all nectar attributes differed between treatments. Sugar concentration was similar between neighboring flowers under the two treatments for S. cincta and S. punicea. In contrast, nectar volume and sugar content showed significant difference between neighboring flowers. Furthermore, correlations for the three attributes were more commonly detected in 24 h bagged flowers than in flowers under natural conditions, suggesting a high variation of floral nectar for flowers in the field.

Conclusion: Our results indicate high variability in floral nectar within the Swertia species. Interspecific difference of floral nectar may relate to pollinator spectrum differentiation. Similarity of sugar concentration within neighboring flowers may be a result of stabilization mechanisms maintained by nectar volume and sugar content. The higher variation in floral nectar under natural conditions potentially drive floral visitors to select different plant individuals.

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Composition and spatial distribution of dominant weed species in urban lawns of China
Zerong He, Peng Ye, Shuting Wang, Yongxin Guan, Shujun Yan, Xinru Hong
Biodiv Sci    2025, 33 (1): 24133.   DOI: 10.17520/biods.2024133
Accepted: 19 February 2025

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Aims: This paper conducts a comprehensive review of literature from the past two decades, focusing on two primary objectives. First, it explores the composition of dominant weed species in urban lawns across China, including the types and characteristics of invasive weeds. Second, it investigates the key factors influencing the distribution and spread of weeds in urban lawns in China. This study aim to provide a theoretical foundation for the scientific management and control of weeds in urban lawns and help protect biodiversity and promote sustainable urban development. Additionally, these findings can support efforts at monitoring weed population dynamics to maintain ecological balance and enhance the health and sustainability of urban green spaces.

Methods: This study conducted a comprehensive review of the literature on urban lawn weeds in 98 cities across China between 2002 and 2024. A statistical analysis of the weed species identified in the literature was carried out after gathering information on dominant weed species, including their Chinese and Latin names, family and genus details, life forms, and flora. These data were used to determine the species, origin, degree, and route of invasion for invasive weeds. Furthermore, β-diversity was assessed using the Jaccard similarity index. The data for this study were sourced from the CNKI database, WANFANG DATA, and VIP database. Statistical analyses were performed using R and SPSS software. The correlation between invasive weed distribution and climatic factors was examined through a nonlinear relationship, and the primary climatic factors influencing the distribution of weed species in urban lawns were identified using redundancy analysis (RDA). Together, these methods enabled a deep exploration of the species composition, spatial distribution, and main influencing factors of urban weeds in China.

Results: (1) A total of 208 dominant weeds, spanning 40 families and 137 genera, were identified in urban lawns. The Compositae was the most prevalent in the literature, constituting 22.12% of the total. The geographical distribution of these flora is complex, with cosmopolitan families holding a significant advantage (23 families). However, at the genus level, the number of temperate distribution genera (57) surpassed that of tropical distribution genera (42), resulting in a tropical to temperate ratio of 2.33 and 0.74 at the family and genus levels, respectively. (2) A total of 37 species of invasive weeds were identified, belonging to 11 families, predominantly Compositae, Gramineae and Fabaceae (59.46%). This included 10 species of malicious invasive species, 11 species of serious invasive species, 4 species of local invasive species, and 12 species of general invasive species. The distribution of invasive weeds in southern China was notably concentrated. (3) The variation in weed composition among different cities aligns with the β-diversity theory, as variation was primarily influenced by geographical distance and climatic conditions.

Conclusion: Plants, particularly Compositae and Gramineae weeds, which are primarily annual and perennial herbs, hold a significant advantage over other species due to their widespread distribution. These plants demonstrate ecological adaptability and competitiveness in the ecological context of urban lawns. A considerable number of invasive weeds are present in these lawns, with some species exhibiting strong dispersal capabilities and posing serious threats to the existing ecological environment. These species are more concentrated in the southern region of the country, indicating that the area faces greater challenges in managing and preventing the spread of invasive weeds. The variation in weed composition between cities aligns with β-diversity theory which suggests species distribution is primarily influenced by geographical distance and climatic conditions. Future research should seek to more accurately assess the risk of invasive weed establishment and further investigate the mechanisms driving diffusion of dominant weeds. Considering the increased influence of global warming on ecosystem dynamics, it is essential to strengthen methods for predicting the distribution of dominant weeds, particularly non-native invasive species, and to conduct research on effective means of biological control. Additionally, a deep study of the life history of frequently occurring weeds is necessary to provide a scientific basis for effective prevention and control strategies.

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A comparison of bird sound recognition performance among acoustic recorders
Wantao Huang, Zezhou Hao, Zixin Zhang, Zhishu Xiao, Chengyun Zhang
Biodiv Sci    2024, 32 (10): 24273.   DOI: 10.17520/biods.2024273
Accepted: 03 December 2024

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Aims: Passive acoustic monitoring technology has been widely used for monitoring bird species, enabling non-invasive and long-term effective monitoring. Extensive data collection requires automated identification technologies for effective analysis. However, differences in recording device performance can affect the accuracy of automated software in identifying bird species.

Methods: Six separate recording devices from various manufacturers are tested by recording bird call playback across four frequency bands. We use BirdNET as the automatic bird sound identifier under two types of vegetation environment, five categories of distance between the recording devices and sound source, and three sound source directions. Our goal is evaluating the impact of these variables on bird species identification performance. We assess the monitoring performance of different recording devices by comparing the basic parameters and configurations of the devices and constructing a generalized linear model (GLM) to statistically analyze the identification results.

Results: Our analysis suggests the type of recording device significantly affects the ability for BirdNET to correctly identify bird species. As distance increases, the effectiveness of the devices in monitoring decreases, with the identification accuracy of BirdNET significantly higher for distances within 50 meters than beyond. Further, the direction of sound impacts identification performance, with accuracy significantly decreasing when the sound source is in opposite direction of the recording device in identifying the four types of bird sound signals with different frequency bandwidth ranges. Additionally, the vegetation type significantly affects the attenuation of bird call signals, with overall identification accuracy in grassland vegetation 40.1% higher than forest vegetation.

Conclusions: Our findings suggest the effectiveness of field recording monitoring should be assessed before selecting and deploying long-term recording monitoring equipment, in addition to evaluating equipment costs and parameters. Based on our evaluation, monitoring distance and direction settings should be optimized to enhance the effectiveness of monitoring strategies.

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Cited: CSCD(1)
  
Effects of urbanization on interspecific interactions involving birds
Zhiqing Hu, Lu Dong
Biodiv Sci    2024, 32 (8): 24048.   DOI: 10.17520/biods.2024048
Accepted: 05 June 2024

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Background & Aim: Urbanization has caused widespread changes in species habitats, leading to changes in community composition and species traits. This process has notably transformed the interspecific interactions involving birds, but current research has limited knowledge about this change. In this paper, the modification patterns of predator-prey interactions, host-parasite interactions, competitive interactions, and mutualistic interactions involving birds in urban environments are reviewed, to provide suggestions for future research and conservation efforts on birds in urban environments.

Review Results: With increasing urbanization, the identity of species involved in various forms of interspecific interactions is directly affected by changes in species composition, leading to changes in the process, intensity, and outcomes of interspecific interactions. In predator-prey interactions, anthropogenic disturbances, enhanced resource availability, and habitat changes modify the community composition of both predators and prey. These changes affect the predation behavior of predators and the antipredator behavior of prey. In host-parasite interactions, pollution and zoonotic disease transmission change parasite taxa, while the spatial concentration and diminished diversity of urban bird communities heighten disease transmission risks. Additionally, factors such as dietary quality and environmental disturbances influence host immunophysiology. In competitive interactions, adaptation of birds to urban environment leads to intensification of competitive behavior, and stabilization of the environment and resource availability may increase competitive intensity and promote competitive exclusion. In mutualistic interactions between birds and plants, the loss of native species and the introduction of exotic species reduce the uniqueness of interactions. Landscape features such as habitat fragmentation affect spatial patterns of pollination and seed dispersal. Changes in the participants and processes of interspecific interactions can modify the nodes and edges in interaction networks and the structural characteristics of such networks, decrease in species diversity simplifies the network structure, while the loss of specialist species and rise of generalist species enhance evenness and reduce the specialization of the interactive networks.

Prospect: There are three important directions for future research on interspecific interactions in urban birds: (1) Development of methods for identifying and quantifying interspecific interactions; (2) Development of ecological network theories, including multilayer networks, in the study of interspecific interactions in urban birds; (3) Utilization of interspecific interactions to increase the effectiveness of conservation in urban bird conservation.

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Seasonal dynamics of arthropod communities during horse dung decomposition in Inner Mongolian grasslands
Jianwei Cheng, Manhou Xu, Yongjing Dou, Yadong Wang, Yanan Wang, Xinmin Liu, Frank Yonghong Li
Biodiv Sci    2024, 32 (6): 24018.   DOI: 10.17520/biods.2024018
Accepted: 12 June 2024

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Aims: Ground-active arthropods play a crucial role in the decomposition of organic material in terrestrial ecosystems, yet little is known about how seasonal variations influence dung arthropod communities.
Methods: This study conducted a field experiment in Inner Mongolian grasslands to investigate the composition dynamics of the arthropod communities in horse dung excreted during different seasons and analyze their relationship with environmental factors.
Results: We found that: (1) Initial water content did not significantly differ across spring, summer, and autumn, but organic matter content was significantly lower in summer dung compared to spring and autumn, while pH was significantly lower in autumn compared to spring and summer. (2) Abundance and group numbers of dung arthropods were significantly higher in autumn horse dung on day 3 and 360 of the decomposition compared to spring horse dung. Similarly, the abundance and species number of dung beetle communities on day 3 and 7 of the decomposition were significantly higher in autumn dung compared to summer. Abundance and generic numbers of Staphylinidae were also substantially higher in autumn dung on day 3 and 7 of the decomposition compared to spring and summer.
Conclusion: Early stage decomposition of horse dung is influenced by organic matter and water content, shaping arthropod community composition. Later stages of decomposition are predominantly regulated by soil temperature and moisture. These findings provide a foundation for further research on the complex interplay between seasonal factors and arthropod dynamics during dung decomposition in Inner Mongolian grasslands.

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Cross-regional bird species recognition method integrating audio and ecological niche information
Jiangjian Xie, Chen Shen, Feiyu Zhang, Zhishu Xiao
Biodiv Sci    2024, 32 (10): 24259.   DOI: 10.17520/biods.2024259
Accepted: 26 September 2024

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Aim: Passive acoustic monitoring plays a pivotal role in studying avian populations, community dynamics, and behaviors. For extensive passive acoustic monitoring, employing deep learning techniques to automatically identify bird species from their vocalizations is essential. However, closely related species often produce highly similar calls, leading to confusion and false positives, which can compromise the effectiveness of deep learning models. This paper presents a novel method that integrates audio data with ecological niche information to enhance species recognition accuracy. Here, ‘ecological niche’ encompasses a species’ role in its environment, including its habitat, diet, and behavior.

Methods: The approach begins with the development of an audio recognition model using the ResNet18, a prominent deep learning framework known for its capability to extract high-level features from audio signals. Subsequently, a maximum entropy model is employed to estimate the distribution of bird species and derive ecological suitability indices for various locations. These indices provide the necessary ecological niche information. An integrated model, NicheNet, is then constructed to combine audio features with ecological niche data for improved species recognition.

Results & Conclusion: The integration of audio and ecological niche information through NicheNet demonstrates substantial improvements in recognition accuracy. Specifically, NicheNet enhances Top-1 recognition accuracy by 12.9% and Top-5 recognition accuracy by 10.6% compared to the ResNet18 model. Additionally, NicheNet reduces the near species error rate by 3.1%, the near genus error rate by 1.8%, and the near family error rate by 8.0%. Analysis of recognition outcomes for congeneric species with similar vocalizations reveals that NicheNet significantly refines classification by leveraging ecological niche information, thereby improving the discrimination of vocally similar but ecologically distinct species. This method effectively addresses the challenge of misidentification among closely related and vocally similar bird species that differ in their ecological niches, thereby advancing the accuracy of cross-regional bird species recognition based on vocalizations.

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Cited: CSCD(2)
  
Advances in lineage sorting theories and their detection methods
Yanwen Lv, Ziyun Wang, Yu Xiao, Zihan He, Chao Wu, Xinsheng Hu
Biodiv Sci    2024, 32 (4): 23400.   DOI: 10.17520/biods.2023400
Accepted: 28 March 2024

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Background & Aims: Lineage sorting (LS) refers to the process in which multiple populations are descended from a common ancestral population or species and are now reproductively isolated from one another. It provides an approach to gain insights into speciation, and is often classified into the phases of polyphyly, paraphyly, and monophyly. The first two phases are in the state of incomplete lineage sorting (ILS) where gene trees do not correctly reflect species trees. The third phase is in the state of complete LS where gene trees are concordant with species trees. Here, we reviewed relevant theories and summarized recent progresses in method for LS detection.

Progress: We first systematically discussed the coalescent theories of how genome sites with distinct evolutionary properties (neutral or selective) in an ancestral population were transmitted to progeny populations. We discussed the potential relationships between gene trees and species trees for neutral and selective genes, respectively. Secondly, we delved into LS analyses based on the neutral DNA sequences, including construction of phylogeny under ILS and the network-based phylogenetic analysis. We then discussed the impacts of selection on LS analysis and methods for detecting both directional and balancing selection based on gene trees and species trees. Finally, we discussed a few open questions about the effects of mating system on LS, the detection of ILS, and the effects of pollen and seed flow on LS.

Prospect: New theories are needed to explore how mating system shapes the LS process for both selective and neutral genes. To appropriately assess ILS for individual genes based on species trees, it is crucial to improve the method estimating species trees and to fully utilize the potential of genome sequence data in future study. Given a high frequency of natural hybridization in plant species, a phylogenetic network method is needed to simultaneously examine pollen and seed flow together with ILS. Answers to these questions could help us to understand in-depth the LS process in plant species.

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2023 annual report on new taxa and nomenclatural changes for Chinese plants
Cheng Du, Jun Liu, Wen Ye, Shuai Liao
Biodiv Sci    2024, 32 (11): 24253.   DOI: 10.17520/biods.2024253
Accepted: 27 December 2024

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Aims: Since 2020, the average annual number of changes in plant names in China has accounted for roughly 1.5% of all changes. Although these plant name changes are not large, cumulative changes over time should not be ignored. Indeed, it is necessary to annually compile information on new taxa, records, and name changes to Chinese plants to integrate these changes into the Catalogue of Life China in a timely manner to facilitate more accurate references for academia and research.

Methods: We collected data on newly discovered taxa and name changes for Chinese higher plants by reviewing 233 journals and related monographs, supplemented by cross-referencing and systematic review using various online databases to ensure the accuracy and comprehensiveness of the compiled information. This compilation involved 419 articles from 63 journals and 4 monographs, and mainly focused on the new taxa and nomenclatural changes in higher plants in 2023.

Results: In 2023, China reported several new taxonomic findings, including 14 genera, 241 species (including new hybrid species), 13 infraspecific taxa, 13 higher taxa (including 7 subfamilies, 4 supertribes, and 2 tribes), 2 subgenera, and 6 sections in higher plants. Additionally, 185 novel combinations (173 at the species level and 12 at the infraspecific level) and 15 new names were published. At the national level, 1 new record family, 5 new record genus, 82 new record species, and 4 new record infraspecies were recently documented. Furthermore, 86 names were synonymized into 58 names. Five species that had not been observed for many years were rediscovered, and one species distribution was excluded. Among the newly published species, there were 9 bryophytes, 23 pteridophytes (including 1 infraspecific taxon), 1 gymnosperm hybrid, and 221 angiosperms (including 2 hybrids and 12 infraspecific taxa). Detailed molecular evidence was provided for 116 of these novel species at the time of publication that account for 46% of all new species. Additionally, 62 species were assessed as threatened according to IUCN standards upon their publication, which represents 24% of all new species. By location, the four southwestern provinces, i.e. Yunnan, Xizang, Guangxi, and Sichuan, published the highest number of new species and accounted for two-thirds of the total new species reported nationwide. In particular, Mêdog County recorded the highest number of new species among county-level administrative units, with 14 new species and records. Likewise, Yingjiang County reported the highest number of national new records, with 21 new plant records documented.

Conclusion: In 2023, China witnessed a net increase of 262 new taxa of higher plants that accounts for roughly 0.56% of all Chinese higher plant species. In addition, 200 names underwent changes, which accounts for 0.43%. These changes represented 0.99% of all Chinese higher plant names modified in 2023 and encompasses both species additions and nomenclature treatments. Multiple indicators suggest that the number of newly published plant taxa and name changes in China are beginning to show a downward trend. However, data tracking and analysis are needed to determine if this decline will continue in the future.

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Genomic resequencing reveals the genetic diversity of the cultivated water caltrop, and the origin and domestication of ‘Nanhuling’
Xiangtan Yao, Xinyi Zhang, Yang Chen, Ye Yuan, Wangda Cheng, Tianrui Wang, Yingxiong Qiu
Biodiv Sci    2024, 32 (9): 24212.   DOI: 10.17520/biods.2024212
Accepted: 02 September 2024

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Aims: Understanding the origins and domestication processes of cultivated crops, is crucial for understanding human civilization. Trapa, commonly known as water caltrop, belongs to the family Lythraceae and is an annual floating-leaf aquatic herb. As a traditional aquatic vegetable crop, the fruit of Trapa has long been a significant food source in early Chinese agricultural societies. However, in recent years, rapid urbanization in China has resulted in habitat destruction, posing a serious threat to its genetic diversity. Moreover, ‘Nanhuling’, a major cultivar of Trapa, holds high economic and cultural value, yet its origin and domestication history are not fully understood.
Methods: In this study, we employed population genomics to investigate the genetic diversity of cultivated water caltrop and the domestication history of ‘Nanhuling’. The dataset for this study was generated by whole-genome resequencing of 31 diploid cultivated T. natans and 23 diploid wild T. natans samples.
Results: Population genetic structure and differentiation indicated that wild and cultivated T. natans belonged to distinct gene pools. Cultivated T. natans originated from the diploid wild T. natans in the Yangtze River Basin. The overall genetic diversity level of cultivated T. natans is lower than that of wild T. natans (0.68 × 10−3 vs. 1.35 × 10−3), and the effective population size is significantly reduced compared to wild T. natans (~4,000 vs. ~7,700), suggesting that cultivated T. natans experienced a genetic bottleneck during domestication. Among cultivated T. natans, ‘Nanhuling’ exhibited the lowest level of genetic diversity and the slowest decay rate of linkage disequilibrium, which may be related to its high degree of domestication and strong selection pressure. Based on the population dynamic history inferred from the FASTSIMCOAL2 ancestral simulation model, we found that there had been gene flow events among ‘Nanhuling’, ‘Wuling’, and other cultivated T. natans. The domestication of ‘Nanhuling’ occurred approximately 669 years ago, consistent with literary records from the Ming Dynasty.
Conclusions: This study is significant as it deepens our understanding of the domestication and genetic evolution of cultivated T. natans. Insights gained from this work may help improve agriculturally valuable characteristics of T. natans, such as crop yields and nutrient content.

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Application of passive acoustic methods in biodiversity monitoring and research
Zhishu Xiao
Biodiv Sci    2024, 32 (10): 24462.   DOI: 10.17520/biods.2024462
Accepted: 23 December 2024

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The biogeochemical niche based on elementome and its applications in different ecosystems
Rui Qu, Zhenjun Zuo, Youxin Wang, Liangjian Zhang, Zhigang Wu, Xiujuan Qiao, Zhong Wang
Biodiv Sci    2024, 32 (4): 23378.   DOI: 10.17520/biods.2023378
Accepted: 08 April 2024

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Background & Aims: All biological organisms are constructed with a specific range and ratio of bioelements—namely the elementome. Organisms integrate multiple elements in optimal ratios to adapt to environmental heterogeneity. Biological elementome is assumed to be species-specific, which is determined by evolutionary history (phylogenetic distances) and controlled by inter-species competition and homeostasis. In community ecology, bioelemental composition and the variations in elementome provide an ideal indicator for quantifying the niche segregation of certain species in a community and predicting the possible responses of niche (displacement, expansion or concentration) to changes in environmental conditions. Biogeochemical niche (BN) quantifies species niches using the concept of elementome and n-dimensional hypervolume. On the basis of a brief summary of niche theory and ecological stoichiometry, we introduced the theoretical framework and the confirmatory studies of biogeochemical niche hypothesis (BNH) in this review. The prospects of its applications in different ecosystems were also discussed.

Review results: According to the BNH, the biogeochemical niche of certain species is defined as a function of phylogenetic distances (taxonomy), species sympatry (inter-species competitive pressure) and homeostasis/plasticity (the ability to maintain a stable elemental composition). This theory applies not only to plants, but also to animals and microbes. Using “biogeochemical niche(s)”, “metabolomic niche(s)”, “stoichiometric niche(s)” as key words, we conducted literature searches utilizing Web of Science (WoS) and CNKI, and manually picked out 84 relevant studies in November 2023. The studies mainly focused on C, N and P, and the most common keywords were “ecological stoichiometry” and “elemental composition”. In terms of taxa, the main taxa concerned in the studies were plants (54 articles), followed by animals (14 articles) and microorganisms (14 articles). We review the recent progress of BNH by taxa in this article.

Prospects & Suggestions: We suggest that the study of BNH be extended from C, N and P to more bioelements, to identify the species niche more accurately in higher dimensions. In different ecosystems, especially in stressful habitats, organisms should change their elementome to adapt to varied environments. More studies focusing on additional taxa (aquatic plants, plankton, fish, etc.) or certain habitats (freshwater or saline lake, river, high mountain, desert, etc.) are likely to help validate the universality of BNH. Furthermore, we propose to study the variations in biogeochemical niche at different life history stages of living beings, and bridge BN and population dynamics, to provide evidence for mechanism of species coexistence.

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Assessing activity pattern of sika deer (Cervus nippon) and their response to roads in the Northeast China Tiger and Leopard National Park
Xiaotong Mai, Jia Kang, Zichen Li, Tianming Wang
Biodiv Sci    2024, 32 (11): 24178.   DOI: 10.17520/biods.2024178
Accepted: 26 September 2024

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Aim: Wildlife modify their daily activity to satisfy food demands, to breed, or to avoid mortality risk. Assessing patterns of wildlife activity is crucial for understanding adaptations to inter-species competition, predation risks, and human disturbances. Sika deer (Cervus nippon) is a primary prey species for tigers (Panthera tigris) and leopards (P. pardus) in the Northeast China. However, the sika deer’s habitat is disturbed by roads. This study assessed the influence of road disturbances on the activity patterns of sika deer, considering their gender, age, reproductive status, and seasonal activity. The aim is to deepen our understanding of behavioral changes in animals due to human disturbance, providing a scientific basis for future conservation and management of sika deer, tigers, and leopards in the Northeast China Tiger and Leopard National Park.

Methods: From April 2021 to March 2022, we deployed 41 pairs of camera traps along the road in Northeast China Tiger and Leopard National Park to collect data of sika deer activity. Based on gender, age, and reproductive status of individuals, we classified sika deer into five sex/age groups. We used the kernel density method to estimate diel activity patterns and activity levels of sika deer, based on 9,825 independent detections of the species. Furthermore, we compared the activity levels and patterns across different seasons, sex/age groups, and levels of road disturbance.

Results: Peak activity of sika deer was observed in June and October. Diel activity patterns varied across seasons, with sika deer being crepuscular during spring and summer, nocturnal in autumn, and diurnal in winter. Diel activity patterns differed between age and sex groups of sika deer; fawns were diurnal, while adults were predominantly crepuscular, with only adult males having an increased probability of nocturnal activity. The negative effects of roads on the activity patterns of sika deer were mainly observed in autumn, which coincided with peak human and vehicular activity. Moreover, sika deer exhibited significantly reduced activity levels near roads during autumn. At sites close to roads, all sex/age groups of sika deer tended to decrease their activity levels.

Conclusion: This study is the first to document seasonal differences in activity patterns and variations among sex/age groups of sika deer in Northeast China. Additionally, it addresses the impact of roads on the diel activity patterns and activity levels of sika deer, revealing that during the high-traffic autumn season, road disturbances significantly affect their activity patterns. Across sex/age groups, sika deer respond similarly to road disturbances, with a shorter period of activity to minimize exposure to road risks while maximizing food intake. Our study emphasizes the negative impact of human activities on the behavioral patterns of this ungulate species. Additionally, it also highlights the behavioral plasticity of sika deer in response to anthropogenic disturbance, suggesting their ability to efficiently utilize alternative food resources. Our methodology provides insights into wildlife management strategies, and we recommend long-term monitoring of wildlife population dynamics and behavioral responses, especially in the Northeast China Tiger and Leopard National Park.

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