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Whole genome resequencing approach for conservation biology of endangered plants
Zhaoyang Jing, Keguang Cheng, Heng Shu, Yongpeng Ma, Pingli Liu
Biodiv Sci    2023, 31 (5): 22679.   DOI: 10.17520/biods.2022679
Accepted: 21 March 2023

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Background & Aims: Increasing attention is focused on global change and loss of biodiversity. Genetics is an important tool in the conservation of threatened species, which have greatly promoted our understanding of diverse areas in conservation biology. However, some key scientific issues in conservation biology, including evolutionary history, endangered mechanism, genetic basis of adaptive evolution and inbreeding depression, are remain to be understood. Spurred by technological advances in high-throughput sequencing, conservation genomics are developed by using of new genomic techniques to solve problems in conservation biology, providing new approaches to deep understanding of the key issues in conservation biology. This paper briefly summarizes the important research progress in the conservation genomics based on whole genome resequencing, aiming to promote the conservation biology of threatened plant in China.
Progress: Whole genome resequencing, being the highest genomic resolution among current methods in conservation genomics, has made many significant advancements, including classification of phylogenetic relationships between unresolved taxa, the reconstruction of population structure, genomic diversity, demographic history, adaptive evolution and inbreeding depression. Based on these advancements, conservation taxa and conservation units are identified, the evolutionary history and endangered causes of species are revealed and the genetic basis of adaptive evolution and inbreeding depression are partly revealed.
Prospect: As whole-genome resequencing provides deep insights into the key issues in conservation biology, with the improvements of even higher throughput and lower cost, whole-genome resequencing will be a routine task in conservation biology studies.

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Historical review, current status and future prospects of global botanical gardens
Jingping Liao, Dujuan Ni, Tuo He, Hongwen Huang
Biodiv Sci    2023, 31 (9): 23256.   DOI: 10.17520/biods.2023256
Accepted: 16 August 2023

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Background: Botanical gardens have deep historical roots, drawing inspiration from the ancient “Shennong Herbal Garden” that has played a pivotal role in China’s herbal civilization. While the origins of modern botanical gardens can be traced back to the medicinal gardens of early European universities, their predecessors lie in medieval herb gardens, representing the rich heritage and evolutionary path of traditional botany and ancient gardens.

Review findings: Over the course of 500 years since the European Renaissance, modern botanical gardens have evolved into vital centers of science and art. They have transcended their roles as mere repositories of flora and fauna to become institutions that seamlessly blend nature, culture, art and science. These gardens have consistently embraced new challenges, adapted to changing circumstances, and taken on new missions, propelling them into an era of sustainable development, in which multiple models coexist harmoniously and at the heart of this transformation lies the core mission of ex situ conservation.

Recommendations: Looking ahead, the construction of China’s national botanical gardens should focus on creating efficient ex situ conservation networks while adhering to rigorous scientific standards. This entails implementing exemplary professional curation practices that bridge the historical legacy of botanical gardens with contemporary conservation imperatives. Prioritizing ex situ conservation efforts, China’s botanical garden community should curate national living collections and conduct high-level scientific research. This approach should be rooted in a renewed emphasis on the value of ex situ flora, ultimately contributing to the establishment of a world-class national botanical garden system. This system will advance plant conservation research, facilitate resource exploration and application, and foster sustainable economic and social development.

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A checklist of vascular plants in Fujian Province, China
Chang An, Yixue Zhuang, Ping Zheng, Yanxiang Lin, Chengzi Yang, Yuan Qin
Biodiv Sci    2023, 31 (6): 22537.   DOI: 10.17520/biods.2022537
Accepted: 28 April 2023

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Aims: To comprehensively understand the current status of vascular plants and provide background materials for the conservation of plant diversity in Fujian Province, the list of vascular plants in the region needs to be updated. This study revises and updates the species list of vascular plants in Fujian Province in the post-flora era.

Methods: Based on Flora of Fujian, we refered to related literature, examined herbarium specimens, consulted relevant lists and databases, and incorporated the results of field investigations conducted by the authors and other front-line peers. The checklist of vascular plants in Fujian Province was sorted according to the latest classification systems of vascular plants (APG IV system, Yang system, and PPG I system). The list included the family and genus information, Chinese name and Latin name, and the county and city distribution information data sources for each species.

Results: In total, there were 5,587 species belonging to 256 families and 1,807 genera of wild, naturalized, and cultivated vascular plants in Fujian Province (wild: 231 families, 1,402 genera, and 4,550 species). This included 414 species of lycophytes and ferns belonging to 102 genera and 32 families, 76 species of gymnosperms belonging to 38 genera and 10 families, and 5,097 species of angiosperms belonging to 1,667 genera and 214 families, respectively. Compared with Flora of Fujian, 8 families, 216 genera, and 1,107 species were newly added. The five largest families of lycophytes and ferns species were Dryopteridaceae (67), Polypodiaceae (51), Pteridaceae (51), Thelypteridaceae (42), and Athyriaceae (38). Among the gymnosperms, the families and the genera with the largest number of species were Cupressaceae (15 genera, 25 species) and Pinus (14 species), respectively. The top 10 largest families of angiosperms are Poaceae (452), Leguminosae (305), Compositae (279), Orchidaceae (244), Cyperaceae (225), Rosaceae (198), Labiata (188), Rubiaceae (126), Malvaceae (85), and Lauraceae (80), with a total of 2,180 species, accounting for 39.0% of the total number of vascular plant species in Fujian Province. The top five largest genera were Carex (94), Rubus (58), Ilex (54), Phyllostachys (38) and Persicaria (36).

Conclusions: This work improves the species distribution profile and specimen information, thus providing basic information for the survey, assessment, and conservation of plant diversity in Fujian Province. Additionally, this study can be used to further develop botany-related disciplines, and the revision of Flora of Fujian.

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List of the wild woody plants in Henan Province
Xiaoning Zeng, Penghang Wang, Mengfan Zhang, Jing Su, Zhiyuan Shi, Fuling Gao, Jiamei Li
Biodiv Sci    2023, 31 (6): 22306.   DOI: 10.17520/biods.2022306
Accepted: 11 November 2022

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Aims: Henan Province is located in the central part of China. Its complex and diverse geographical environment play an important role in the region’s rich plant diversity. A large number of plant specimens collected by predecessors have provided strong support for the publication of Flora of Henan. However, the Flora of Henan (Supplement and Revision) lacked a great deal of field investigation and omitted some previously published new records. We have updated the catalog to clarify the wild woody plant resources in Henan Province.

Methods: Based on a review of published literature, including all specimens from Henan Province preserved in all the herbariums in China, and continuous field survey of all mountains in Henan Province during the past 5 years, this paper updates the checklist of wild woody plants in Henan Province, China. In this new checklist, the delimitation and arrangement of plant families followed new systems primarily based on molecular phylogenetics.

Results: According to the revision of Flora of China, we recorded a total of 984 species with 32 subspecies, 148 varieties and 11 forms of wild woody plants in this checklist. This included synonyms of 5 genera, 102 species, 21 subspecies and 24 varieties from Flora of China, together with 6 genera, 194 species, 20 subspecies, 35 varieties and 1 form from Flora of Henan. 168 new records and 50 problematical taxa of wild woody plants from Flora of Henan were also listed in this checklist.

Conclusion: Our results show that continuous field survey of plant diversity is still important in the Shangcheng, Xinxian, Tongbai, Xichuan, Lushi, and Lingbao in provincial boundary counties in Henan Province.

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Research advances on the ecology of Sousa chinensis
Liming Yong, Yuke Zhang, Liyuan Zhao, Qianhui Zeng, Longshan Lin, Minhao Gao, Hao Cheng, Xianyan Wang
Biodiv Sci    2023, 31 (5): 22670.   DOI: 10.17520/biods.2022670
Accepted: 22 March 2023

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Background & Aims: The Indo-Pacific humpback dolphin (Sousa chinensis) has been listed as the Grade 1 National Key Protected Animal in China. As the top predator of the inshore marine food chain, S. chinensis is an indicator species of the health status of the inshore ecosystem. Due to the important ecological, scientific and cultural values, it is also used as the flagship species for marine biodiversity conservation. Since the 1990s, the studies on S. chinensis have gradually risen, and developed to a new period in recent years along with the application of 3S (RS, GPS, GIS), ecological models, and molecular biological techniques. We summarized the studies of S. chinensis from the aspects of population ecology, behavioral ecology, molecular ecology and the threats that the species faced so far, aiming to clarify the advances in the ecological studies and the contributions to conservation of S. chinensis.
Progress: Ecological information such as distribution and abundance of S. chinensis population known globally in the world has been investigated by domestic and foreign scholars using line-transect sampling and capture-mark-recapture methods. In the context of species conservation, studies on habitat selection preference, habitat quality evaluation and potential habitat prediction of S. chinensis were performed. The rules of foraging behavior and reproduction behavior of S. chinensis were preliminarily understood, and the ecological significance of other behaviors were also explored. With the application of molecular biotechnology, the genetic differentiation of S. chinensis and its vulnerability to climate change have been preliminarily revealed. Human activities such as marine construction projects, underwater noise, marine pollution, and fishery activities are still the main threats to S. chinensis.
Perspectives: Based on the summary of existing studies, we propose the following prospects for the future ecological research and conservation of S. chinensis: (1) Establish a dynamic baseline database at the national level to better track the population dynamics and habitat environment changes of S. chinensis. (2) Establish a habitat identification and conservation evaluation system, and carry out identification and hierarchical management of critical and potential habitats of S. chinensis. (3) Study the habitat selection mechanism from the ecosystem level, combined with the ecological model to explore the carrying capacity of the current habitat to the S. chinensis, and further explore the impact of habitat hydrological factors, biological resources and human activities on the habitat selection of S. chinensis. (4) Construct a genetic resource database for S. chinensis, and explore the links among natural selection, ecological impact and genetic evolution, so as to reveal the molecular mechanisms of species evolution, adaptation and endangerment. (5) In order to effectively deal with the impact of global marine environmental changes on the S. chinensis, it is recommended to establish a scientific research cooperation platform and protection management network among the S. chinensis distribution countries.

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Composition and historical changes of plant species diversity in Shanghai and the updated checklist of Shanghai vascular plants (2022)
Cheng Du, Yuan Wang, Xiaoling Yan, Jing Yan, Huiru Li, Qingfei Zhang, Yonghong Hu
Biodiv Sci    2023, 31 (6): 23093.   DOI: 10.17520/biods.2023093
Accepted: 19 May 2023

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Aim: Shanghai has been acknowledged for its remarkable achievement in accommodating a dense population and effectively utilizing its land. However, the native plant species within the city have faced significant disruptions due to human interference, resulting in a decline in species diversity. Nevertheless, Shanghai boasts an area of immense botanical value, featuring a wide array of cultivated plants. In fact, it stands as the only region in China where the number of cultivated plants exceeds that of native plants. In order to safeguard the diversity of plants and promote the sustainable utilization of these invaluable botanical resources in Shanghai, especially in preparation for the forthcoming comprehensive regional biodiversity survey, we have taken on the task of updating the checklist of Shanghai vascular plants.

Methods: This paper utilized the plant specimens and image information collected during extensive field surveys conducted over the years. Furthermore, collections and literature data were incorporated to supplement the cataloging data of species. Especially, the time when species were first discovered or recorded in Shanghai was determined based on the original records found in literature and specimens. Additionally, the names and systems of the included species were revised based on the classification revision literature of specific taxa and the latest advancements in molecular systematics.

Results: The resulting checklist included a total of 4,126 species, infra-species taxa and cultivars of vascular plants. This included 1,238 wild and escaped plants and 2,888 cultivated plants from 211 families, 1,176 genera, and 2,782 species with 38 subspecies, 107 varieties, and 5 forms. Additionally, there were 1,194 cultivated varieties listed. The number of taxa included in the current version of the list has increased by 914 compared to the checklist of Shanghai vascular plants (2013 version), largely due to the inclusion of newly cultivated varieties. While only 34 new wild species were added, native plants saw an even smaller increase, with only 5 new species included. The survey revealed that 92 native plants were no longer present in the area, which suggested that the number of native plants in Shanghai has declined for the first time. This underscores the importance of conducting specialized surveys of native plants in Shanghai, particularly for those that have not been observed in several years. The history of the substantial increase in cultivated plant diversity in Shanghai was relatively short, spanning only 40 years. The number of original species of cultivated plants started to increase in 1980, and since 2010, there has been a significant surge in cultivated plants, with the majority being artificially selected varieties. This trend was largely influenced by factors such as socioeconomic status, human preferences, and cultivation management practices. The updated vascular plant checklist adopted new systems of delimitation and arrangement of plant families, which were primarily based on molecular phylogenetics. The reasons and references for scientific name changes were also provided. Additionally, an online dataset of the checklist was readily available to the public in Excel format, facilitating easy access, retrieval, and utilization of the data.

Conclusions: Based on our results, we recommend that field surveys continue, with a particular focus on species missing from the recent survey. Additionally, since more than half of the newly added alien plants are invasive species, it is crucial to strengthen the investigation and monitoring of these plants.

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Formulating the National Botanical Garden System Layout Plan of China: Background, procedures, ideas and key considerations
Shifeng Wen, Zhihua Zhou, Tuo He, Hui Dong, Liangchen Yuan, Zeyang Lu, Yongteng Wang, Lin Guo, Jiangping Shu, Kaifan Li
Biodiv Sci    2023, 31 (9): 23193.   DOI: 10.17520/biods.2023193
Accepted: 27 September 2023

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Background: In October 2021, Chinese President XI Jinping announced the launch of the construction of a national botanical garden system in cities such as Beijing and Guangzhou. To facilitate the high-quality development of this national botanical garden system, the National Forestry and Grassland Administration of the People’s Republic of China, in collaboration with the Ministry of Housing and Urban-Rural Development of the People’s Republic of China and the Chinese Academy of Sciences, devised the National Botanical Garden System Layout Plan of China.

Results: This plan was formulated by considering various factors, including major national strategies, distinct climate types, regional vegetation characteristics, priority areas for biodiversity conservation, and alignment of economic and social developmental needs. By incorporating the distribution and operational foundation of existing botanical gardens, the layout strategically encompasses fourteen candidate national botanical gardens in addition to two established national botanical gardens. These selections are based on criteria such as national representation, scientific systematicity, and public welfare. The plan fosters a comprehensive national botanical garden system that boasts rational layout and complementary functions.

Outlook: The national botanical garden system will be incrementally advanced following the principle of “mature one and establish one”. This paper provides a comprehensive overview of the background, procedures, ideas and critical considerations involved in the development of the National Botanical Garden System Layout Plan of China. The creation of the national botanical garden system will significantly contribute to biodiversity conservation and offer a distinct Chinese approach toward realizing the goals set by the Kunming-Montreal Global Biodiversity Framework.

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A checklist of wild vascular plants in Guangxi, China
Yigang Wei, Fang Wen, Zibing Xin, Longfei Fu
Biodiv Sci    2023, 31 (6): 23078.   DOI: 10.17520/biods.2023078
Accepted: 21 June 2023

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Aims: To comprehensively understand the current status of wild vascular plant resources in Guangxi and provide basic information for the corresponding biodiversity conservation practice, it is necessary to revise and update the checklist of vascular plants in Guangxi.

Method: Based on the authors’ forthcoming book “Catalogue and Red List of Plant Species in Guangxi”, we updated the checklist of wild vascular plants in Guangxi.

Results: The results showed 262 families, 1,793 genera, 8,221 species, 57 subspecies, 460 varieties, and 1 form of wild vascular plant in Guangxi. Among them there were 36 families, 118 genera, 699 species, 3 subspecies, 13 varieties, and 1 form of lycophytes and pteridophytes; and 7 families, 21 genera, 60 species, and 5 forms of gymnosperm; 219 families, 1,654 genera, 7,462 species, 54 subspecies, and 442 forms of angiosperms. In addition, 129 families, 385 genera, 1,209 species, 2 subspecies, and 49 varieties of karst obligate plants were counted in this paper, accounting for 14.42% of the total taxa in Guangxi. The top ten largest families of karst obligate plants are Gesneriaceae, Asparagaceae, Orchidaceae, Rubiaceae, Urticaceae, Begoniaceae, Acanthaceae, Primulaceae, Lauraceae, and Euphorbiaceae. In contrast, the top ten largest genera are Primulina, Begonia, Aspidistra, Elatostema, Spiradiclis, Polystichum, Petrocodon, Lysimachia, Strobilanthes, and Paraboea, respectively. 4 genera (Metapilea, Heteroplexis, Allostigma, and Gyrogyne) and 901 species, 3 subspecies, and 61 varieties of vascular plants are endemic to Guangxi, accounting for 11.04% of the total species in Guangxi. A total of 349 taxa of vascular plants in Guangxi are on the List of National Key Protected Wild Plants (2021). It accounted for 33.46% of the species of wild vascular plants under national key protected wild plants in China.

Conclusions: The dynamic update of this checklist is the periodic summary and induction of wild vascular plants in Guangxi. There are still 253 suspected species to be confirmed. These species provide a clear direction for further improving the catalog of wild vascular plants in Guangxi. Therefore, this paper calls on related botanical researchers to conduct more in-depth investigations and research on wild vascular plant diversity in Guangxi.

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A comparative analysis of the List of State Key Protected Wild Animals and other wildlife protection lists
Jinfeng Chen, Xinjing Wu, Hai Lin, Guofa Cui
Biodiv Sci    2023, 31 (6): 22639.   DOI: 10.17520/biods.2022639
Accepted: 25 May 2023

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Aims: The List of State Key Protected Wild Animals is a crucial legal foundation that guides the implementation of species conservation efforts, especially rescue plans for endangered species. The recently published and implement 2021 version of the List of State Key Protected Wild Animals, represents the first major revision in 32 years and is of immense importance for biodiversity conservation in China. Our study aims to assess the efficacy of its species conservation measures dictated by the List, offer insights, and aid future revisions.

Methods: Our study has summarized and organized a total of 1,520 species (with subspecies) based on the new version of the List of State Key Protected Wild Animals. We then selected four wildlife lists that are representative and relevant to conservation and conducted a statistical analysis of the conservation status and level of threat for the same species across different lists.

Results: The results indicate that the new version of the List of State Key Protected Wild Animals has broadened the scope of wildlife protection by adding 1,038 species to the previous list of 482 species (with subspecies) which was compiled in 1989, as we previously summarized. Of the new additions, 43 species have been categorized as national category I and 995 as national category II. Moreover, the protection category of some species has also been revised (3 species downgraded to national category I, 66 species upgraded to national category II, and 413 species in total maintaining the same category). However, despite these positive changes, according to China’s Red List of Biodiversity: Vertebrates (2021 Edition) more than half of the endangered species in China are still not covered in the new version of the List of State Key Protected Wild Animals.

Conclusion: To promote the comprehensive and effective protection of endangered species in China, it is recommended that future adjustments to the List of State Key Protected Wild Animals give comprehensive attention to the endangered species on the list. If species in the Critically Endangered and Endangered categories are listed as national category I key protected wildlife, the existing 164 national category II key protected wildlife should be upgraded to national category I key protected wildlife, and 162 new wildlife species should be added to national category I key protected wildlife. Additionally, if species in the Vulnerable category are listed as national category II key protected wildlife, 340 new national category II key protected wildlife should be added. A comprehensive database of the List of State Key Protected Wild Animals can be established to achieve standardized and dynamic management of the list.

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Advances of marine biogeography in China: species distribution model and its applications
Yunwei Dong, Menghuan Bao, Jiao Cheng, Yiyong Chen, Jianguo Du, Yangchun Gao, Lisha Hu, Xincheng Li, Chunlong Liu, Geng Qin, Jin Sun, Xin Wang, Guang Yang, Chongliang Zhang, Xiong Zhang, Yuyang Zhang, Zhixin Zhang, Aibin Zhan, Qiang H, e Jun Sun, Bin Chen, Zhongli Sha, Qiang Lin
Biodiv Sci    DOI: 10.17520/biods.2023453
Accepted: 02 March 2024

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A dataset of the morphological, life-history, and ecological traits of snakes in China
Jiang Wang, Yifan Zhao, Yanfu Qu, Caiwen Zhang, Liang Zhang, Chuanwu Chen, Yanping Wang
Biodiv Sci    2023, 31 (7): 23126.   DOI: 10.17520/biods.2023126
Accepted: 12 July 2023

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As of January 2023, China has a total of 312 snake species, establishing itself as one of the most diverse countries in terms of snake biodiversity worldwide. The characteristics exhibited by snakes hold significant sway over their survival within their respective environments, making them an important role in the study of their evolutionary biology, ecology, and conservation biology. However, a comprehensive dataset encompassing the morphological, life-history, and ecological traits of Chinese snakes has yet to be established. Therefore, the primary objective of this study is to provide a comprehensive dataset comprising the various traits exhibited by Chinese snakes. To accomplish this goal, we conducted a systematic collection of data from a range of sources, including published snake books, the peer-reviewed and non-peer-reviewed literatures, as well as the Reptile Database (https://reptile-database.reptarium.cz/). Our data compilation encompasses 41 distinctive traits, which were classified into three main types: morphological traits (25 traits such as scales and teeth), life-history traits (11 traits such as body length, diet, foraging mode, reproductive modes, clutch size, egg size, activity time, and venomousness), and ecological traits (5 traits such as Chinese/island endemism, adult habitat, geographical and elevational distributions). Among all these 41 traits, apart from geographical distribution, mental and rostral scales, which are 100% complete, the data on other traits were incomplete to varying degrees, ranging from 7.72% to 99.70%. This dataset is the most up-to-date and comprehensive collection of Chinese snake traits available to date. It provides a unique and invaluable resource for exploring the evolution, biogeography, ecology, and conservation biology of Chinese snakes.

Database/Dataset Profile

Title A dataset of the morphological, life-history and ecological traits of snakes in China
Authors Jiang Wang, Yifan Zhao, Yanfu Qu, Caiwen Zhang, Liang Zhang, Chuanwu Chen, Yanping Wang
Corresponding author Yanping Wang (wangyanping@njnu.edu.cn)
Time range Until January 2023
Geographical scope The People's Republic of China, including Taiwan, Hongkong, and Macao
File size 610 KB
Data format .xlsx
Data link http://dataopen.info/home/datafile/index/id/288
http://doi.org/10.24889/do.202305002
https://www.biodiversity-science.net/fileup/1005-0094/DATA/2023126.zip
Database/Dataset composition The dataset provided in this study consists of one data file and two descriptive files in total. It comprises 41 distinct species characteristics, covering all 312 snake species found in China.
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Food source characteristics and diversity of birds based on feeding behavior in residential areas of Beijing
Luqin Yin, Cheng Wang, Wenjing Han
Biodiv Sci    2023, 31 (5): 22473.   DOI: 10.17520/biods.2022473
Accepted: 01 January 2023

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Aims: Urban areas can provide important habitats for birds. Residential green spaces can play an important role in urban green spaces and may provide valuable resources for urban birds. Food diversity and quantity can be one of the factors that could be limiting bird survival. Therefore, by considering the food preferences of birds, this study aims to determine the relationship between birds and their food sources in Beijing residential areas. Furthermore, this study seeks to determine what factors may influence bird feeding behavior in residential areas.
Methods: Forty residential areas were selected as survey plots and surveyed monthly from June 2020 to May 2021. Shannon-Wiener diversity index was used for evaluating bird diversity, and the distribution was defined as the numbers of residential areas where birds fed. A generalized linear model was used to evaluate the influencing factors of bird feeding in residential areas, and linear regression was performed on the diversity index, abundance and the distribution of bird feeding sources.
Results: (1) The feeding behavior of 2,242 birds (35 species, 14 families) were recorded. We observed that bird richness was at its highest in spring, followed by autumn, winter and summer, then abundance was at its highest in spring, followed by winter, autumn and summer, and the Shannon-Wiener diversity index was at its highest in autumn, followed by spring, winter, summer. (2) A decrease in food sources was observed in the following: insects (33.87%), samara (18.33%), berries (9.77%), cones (8.16%) and grass seeds (5.17%). (3) The direct utilization of plants by birds was 60.4%, while the indirect utilization was 39.6%. The Shannon-Wiener diversity index of food source plants decreased in autumn (3.1612), winter (2.9651), spring (2.9203) and summer (2.1763). (4) The species of food source was the most critical environmental factor that determined birds feeding behavior in residential areas. Birds with more abundant food sources had larger populations and wider distribution ranges.
Conclusion: Plant species in residential areas can be highly diverse and can offer a wide range of food sources for multiple species of birds throughout their entire phenology between the early spring and autumn. It is necessary to plant more native tree species and fruiting plants, reduce hedgerows, and advocate near-natural management measures with low disturbance.

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New vertebrate species discovered in China in 2022
Jianping Jiang, Bo Cai, Bin Wang, Weitao Chen, Zhixin Wen, Dezhi Zhang, Lulu Sui, Shun Ma
Biodiv Sci    2023, 31 (10): 23241.   DOI: 10.17520/biods.2023241
Accepted: 23 November 2023

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Aim: To collate and report new vertebrate species discovered in China in 2022.

Methods: This paper summarizes the basic information on vertebrate species discoveries published in 2022, including 87 papers and 1 annual report of bird watching in China (http://www.birdreport.cn/).

Results: In 2022, 120 vertebrate species were discovered in China, including 98 species new to science, 17 species not previously reported in China, and 5 valid species upgraded from subspecies. These species belong to 17 orders, 43 families, and 71 genera. Among them are 30 new species of fishes; 44 species of amphibians, including 34 new species and 10 newly recorded in China; 26 species of reptiles, including 21 new species and 3 newly recorded in China, and 2 species upgraded from subspecies; 6 species of birds, including 1 new species, 3 newly recorded in China, and 2 species upgraded from subspecies; 14 species of mammals, including 12 new species, 1 newly recorded in China and 1 species upgraded from subspecies. Cold-blooded vertebrates account for 83% of new species discoveries; most of the fishes, amphibians, reptiles, and mammals were species of Cypriniformes, Anura, Squamata, and Rodentia, with 22, 37, 25, and 11 species, respectively. These 120 newly discovered vertebrates were recorded in 26 provincial regions. Of these species, 106 were only recorded in one provincial region. A total of 97 of these species have been supported by molecular systematics. There were 111 species described by Chinese scholars; 105 species were published in journals, and 19 species of these were published in three English journals in China.

Conclusion: This work provides important basic information for the classification and protection of vertebrates in China. In addition, it also indicates that cold-blooded vertebrates are the key group of the vertebrate species diversity research in China, and that an integrated classification approach is essential to support future taxonomic studies.

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A dataset on inventory and geographical distributions of wild vascular plants in Hainan Province, China
Caiqun Liang, Yukai Chen, Xiaobo Yang, Kai Zhang, Donghai Li, Yuexin Jiang, Jinghan Li, Chongyang Wang, Shunwei Zhang, Zicheng Zhu
Biodiv Sci    2023, 31 (6): 23067.   DOI: 10.17520/biods.2023067
Accepted: 21 June 2023

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Hainan Province is an area with a large contiguous area of tropical rainforest in China. It is one of the key areas of biodiversity with the largest tropical rainforest area and the most abundant species diversity in China. During 2012-2015, the Inventory of Plant Species Diversity of Hainan, List of Species in Hainan, and Illustrated Handbook of Plants in Hainan were published in succession. The progress of related cataloging is relatively advanced in China. However, with the in-depth study of Hainan plants, the names of some vascular plant taxa originally recorded have changed after new taxonomic revision. The classification of families and genera and their names need to be adjusted. At the same time, the original classification system also need to be updated. Based on the List of Species in Hainan and Illustrated Handbook of Plants in Hainan, combined with experience from many years of practical field investigation, we systematically searched the literature to fill the gaps in the existing catalog data, checking for omissions and deficiencies. The name was revised, the classification system updated, and relevant information such as plant distribution areas and protection levels improved. Finally, the cataloging and distribution dataset of wild vascular plants in Hainan Province was complete. As of February 2023, the dataset had 4,945 records, including 39 species of lychophytes belonging to 6 genera of 2 families; 531 species of ferns belonging to 121 genera of 32 families; 27 species of gymnosperms belonging to 10 genera of 6 families, and 4,348 species of angiosperms belonging to 1,380 genera of 181 families. Among them, there were 173 species listed in the List of National Key Protected Wild Plants (2021) (8 species in the first class and 165 species in the second class); there were 4,769 species of native wild plants belonging to 1,448 genera and 216 families (including 516 endemic species of Hainan) and 176 species of exotic and naturalized plants (including 63 invasive species). Compared with the first edition of the List of Species in Hainan, the total number of wild vascular plants increased by 225 species. This dataset can be used as important basic data for vascular plant diversity monitoring and protection in Hainan Province.

Database/Dataset Profile

Title A dataset on inventory and geographical distributions of wild vascular plants in Hainan Province, China
Author(s) Caiqun Liang, Yukai Chen, Xiaobo Yang, Kai Zhang, Donghai Li, Yuexin Jiang, Jinghan Li, Chongyang Wang, Shunwei Zhang, Zicheng Zhu
Corresponding author Xiaobo Yang (yanfengxb@163.com)
Time range 1994-2022
Geographical scope Hainan Province
Spatial resolution District (county)
File size 759 KB
Data format *.xlsx
Data link https://www.scidb.cn/s/ZBbqy2
https://doi.org/10.57760/sciencedb.09087
https://www.biodiversity-science.net/fileup/1005-0094/DATA/2023067.zip
Database/Dataset composition The dataset consists of 1 data file containing 1 sheet with 4,945 items (rows) and 15 fields (columns) as following: number, main categories of vascular plants, number of family, family name in Chinese, family name, genus name in Chinese, genus name, name in Chinese, scientific name, author, rank in the List of National Key Protected Wild Plants (2021), growth status, the symbol of growth status, distribution and habitat, data sources.
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Questioning the goal of ex-situ conservation about more than 85% native wild plants of China
Liu Huajie
Biodiv Sci    2024, 32 (2): 24009.   DOI: 10.17520/biods.2024009
Accepted: 01 March 2024

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A dataset on inventory and geographical distribution of vascular plants in Xizang, China
Yousheng Chen, Zhuqiu Song, Ran Wei, Yan Luo, Wenli Chen, Fusheng Yang, Lianming Gao, Yuan Xu, Zhuoxin Zhang, Pengcheng Fu, Chunlei Xiang, Huanchong Wang, Jiachen Hao, Shiyong Meng, Lei Wu, Bo Li, Shengxiang Yu, Shuren Zhang, Li He, Xinqiang Guo, Wenguang Wang, Yihua Tong, Qi Gao, Wenqun Fei, Youpai Zeng, Lin Bai, Zichao Jin, Xingjie Zhong, Buyun Zhang, Siyi Du
Biodiv Sci    2023, 31 (9): 23188.   DOI: 10.17520/biods.2023188
Accepted: 13 October 2023

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The Xizang Autonomous Region, the provincial administrative region with the second largest land area in China, is located on the vast Qinghai-Tibet Plateau, which, in addition to being the tallest and largest plateau in the world, is also an incredibly rich biodiversity hotspot, supporting a variety of ecosystem. Initial efforts by research groups in the 1980’s to elucidate the full extent of plant diversity in this region has been described previously in the book series Flora Xizangica, however the collection of records of plants in southern Xizang remains largely incomplete in this work. The study presented here compiles information extracted from floras, periodical literature, dissertations, collected specimens from field surveys, and the Plant Photo Bank of China (PPBC) to provide an updated dataset of vascular plants in all of Xizang. Each record in this dataset represents the distribution of taxonomic groups at the county or city level and includes the following: category, survival status, Chinese family name, Latin family name, Chinese genus name, Latin genus name, Chinese species name, Latin species name, authors of the Latin species name, county or city level distribution, literature evidence, literature notes, specimen evidence, etc. Based on this new dataset, we archived a list of vascular plants of Xizang. As of August 2023, this checklist contains 11,853 taxa across 252 families and 2,049 genera of vascular plants, including 50 taxa belonging to 2 families and 7 genera of lycopods, 699 taxa belonging to 31 families and 110 genera of pteridophytes, 84 taxa belonging to 6 families and 19 genera of gymnosperms, and 11,020 taxa belonging to 213 families and 1,913 genera of angiosperms. From this data we identified the top 10 families possessing the highest number of species in this region (Asteraceae, Orchidaceae, Poaceae, Fabaceae, Rosaceae, Ericaceae, Ranunculaceae, Lamiaceae, Primulaceae, and Apiaceae). Finally, we also generated a checklist of vascular plants with excluded/dubious records in Xizang, which includes 900 species of 454 genera across 121 families. This study will provide an expanded basic background and central framework for the second edition of Flora Xizangica, as well as serve as an important reference for plant diversity conservation and monitoring throughout Xizang forward.

Database/Dataset Profile

Title A dataset on inventory and geographical distribution of vascular plants in Xizang, China
Authors Yousheng Chen, Zhuqiu Song, Ran Wei, Yan Luo, Wenli Chen, Fusheng Yang, Lianming Gao, Yuan Xu, Zhuoxin Zhang, Pengcheng Fu, Chunlei Xiang, Huanchong Wang, Jiachen Hao, Shiyong Meng, Lei Wu, Bo Li, Shengxiang Yu, Shuren Zhang, Li He, Xinqiang Guo, Wenguang Wang, Yihua Tong, Qi Gao, Wenqun Fei, Youpai Zeng, Lin Bai, Zichao Jin, Xingjie Zhong, Buyun Zhang, Siyi Du
Corresponding author Yousheng Chen (yschen@scbg.ac.cn)
Time range 1951-2023.8
Geographical scope Xizang Autonomous Region
Spatial distribution resolution District (County)
File size 5.61 Mb
Data format *.xlsx
Data link https://www.scidb.cn/en/s/U7ZzQv
https://doi.org/10.57760/sciencedb.10219
https://www.biodiversity-science.net/fileup/1005-0094/DATA/2023188.zip
Database/Dataset composition The dataset consists of 1 data file with 50,525 items (rows) and 21 fields (columns) as following: number, categories, sequence number of family, Chinese name of family, Latin name of family, Chinese name of genus, Latin name of genus, Chinese name of species, Latin name of species, author, altitude, growth status, county-level distribution, literature, literature notes, specimen vouchers, specimen links, PPBC photo links, protection level, Latin names in Catalogue of Life China: 2023 Annual Checklist, Latin names in Flora of China.
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Ecological network analysis: From metacommunity to metanetwork
Zhirong Feng, Youcheng Chen, Yanqiong Peng, Li Li, Bo Wang
Biodiv Sci    2023, 31 (8): 23171.   DOI: 10.17520/biods.2023171
Accepted: 27 August 2023

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Background & Aims: At the landscape scale, multiple local communities are distributed along environmental gradients, and these local communities are interconnected through species dispersal, together forming metacommunity. When considering both the species composition and interspecific interactions of metacommunity, the concept of metanetwork emerges. With methods in network analysis, metanetwork illustrate the distribution of species interactions across multiple communities. The research scale and numerous network metrics corresponding to different data types often confuse researchers.
Progress: We begin by categorizing and organizing network metrics, and then proceed to differentiate between global and local network metrics. This provides explanations for their application scenarios, computation processes, and ecological significance, while also discussing the impact of sampling intensity on these metrics and exploring their relationships. We introduce the network β-diversity metrics that are computed based on interaction diversity. Subsequently, we outline the statistical inference approaches used in network analysis, incorporating both individual network metrics and network β-diversity metrics. Finally, we provide a summary of the recent research trends, which has shifted from metacommunity to metanetwork.
Prospects: We stress the significance of taking into account the influence of phylogenetic relationships on network composition and interactions in research papers. Multilayer networks offer the capability to represent community structures at a wider scale of species interactions, thus revealing more comprehensive community dynamics. Consistency in the analytical approach of metanetworks is vital for facilitating comparisons across diverse studies.

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Biogeographic patterns in Southeast Asia: Retrospectives and perspectives
Meng Honghu, Song Yigang
Biodiv Sci    2023, 31 (12): 23261.   DOI: 10.17520/biods.2023261
Accepted: 08 December 2023

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Background & Aims: The regions of Southeast Asia are recognized as global biodiversity hotspots that require conservation priority. Since the mid-19th century, Southeast Asia has been widely considered as one of the most important foundations of biogeography. This recognition stems from the groundbreaking field works of Alfred Russel Wallace, who spent eight years to extensively explore the regions and proposed the geographic distribution patterns of fauna in Malesia (or the Malay Archipelago). Wallace’s works in Southeast Asia, such as the famous “Wallace Line” and its distinct distribution patterns, established the region as a crucial cradle and frontier of biogeography. Also, such renowned works have garnered significant attention from numerous biogeographers and ecologists. Additionally, the unique geomorphology and abundant biodiversity in Southeast Asia have sparked a growing scientific interest, leading to an increasing number of studies that explored the biodiversity and geographic distribution patterns in the regions. The comprehension of geographic distribution patterns of biodiversity in Southeast Asia can enhance our understanding of the origination, evolution, and response of global biodiversity to environmental and climatic changes.

Progress: In this review, we have undertaken a comprehensive synthesis of the primary biogeographic investigation conducted in Southeast Asia, spanning from the era of Alfred Russel Wallace to the present day. The main biogeographic studies in Southeast Asia are retrospectively reviewed and the existing problems are considered here.

Conclusion: Several key findings of biogeography in Southeast Asia with the most important distribution patterns are listed as follows. Firstly, Southeast Asia, based on the boundary or delimitation, encompasses the Indochina Peninsula and Malesia, which consist of four distinct bioregions: Indochina, Sundaic, Philippines and Wallacea. Secondly, the biogeographic patterns with these regions, as well as the biogeographic relationships or patterns among regions are primarily influenced by the mechanism of vicariance, migration and dispersal. Thirdly, the difference in biogeographic boundaries, particularly along the Wallace Line, can be attributed to variations in the migration and dispersal capacity of plants and animals. Lastly, the biogeographic connections between Southeast Asia and Sahul are mainly driven by the exchanges of flora and fauna, with elements from both regions have been migrated to and from each other. This review presents some ideas and offers recommendations to address the unresolved challenges of the field of biogeography in Southeast Asia. In all, we hope this review serves as a link between past and future, intends to throw out a minnow to catch a whale, and facilitates the flourishing development of biogeography in Southeast Asia.

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Determinants of species-area relationship and species richness of coastal endemic plants in the Fujian islands
Yanqiu Xie, Hui Huang, Chunxiao Wang, Yaqin He, Yixuan Jiang, Zilin Liu, Chuanyuan Deng, Yushan Zheng
Biodiv Sci    2023, 31 (5): 22345.   DOI: 10.17520/biods.2022345
Accepted: 19 May 2023

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Aim: Fujian Province is made up of numerous islands that are rich in endemic plant resources. Conducting research on their distribution patterns and mechanisms of diversification can provide a basis for conservation and protection of coastal endemic plants. Our aim is to investigate the distribution patterns and mechanisms of species richness of coastal endemic plants in Fujian islands.
Methods: This study investigated the species-area relationship of coastal endemic plants in 53 islands of Fujian Province as well as the impact of 10 environmental factors on plant species richness from three sources: landscape, human disturbance, and climate. Differential responses by various growth forms of plants, such as trees, shrubs, and herbs, to environmental factors were also discussed.
Results: The species-area relationship between coastal endemic plants and different growth forms of plants showed a trend of increasing species richness with increasing area. The area, shape index, and perimeter area ratio of environmental factors of the landscape were the main factors that explain the abundance of coastal endemic plants and different growth forms of species on Fujian islands. Both the coastal endemic plants and their differing growth forms increased as the area and shape index increased, while the coastal endemic plants species richness as well as shrub and herb richness decreased with an increase in the perimeter area ratio. Further, the various growth forms exhibited differential species richness responses to island environmental factors. Apart from landscape factors, climate had the highest interpretation rate for trees, reaching 9.82%.
Conclusion: Compared to other island ecosystems, the species richness of coastal endemic plants and different growth forms in the Fujian islands is strongly correlated with island area, but are less sensitive to island habitats. Landscape environmental factors contributed more to the interpretation rate than climate and human disturbance. Previous studies have found that island environmental factors are significantly correlated with habitat heterogeneity. For example, the larger the island, the more irregular its shape, and the lower its perimeter area ratio, the higher the habitat heterogeneity. Therefore, the high level of habitat heterogeneity in this study may be the underlying mechanism that explains the changes in coastal endemic plant abundance with landscape environmental factors.

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Spatial patterns in woody species diversity in the Qianjiangyuan National Park
Shengwen Chen, Haibao Ren, Guangrong Tong, Ningning Wang, Wenchao Lan, Jianhua Xue, Xiangcheng Mi
Biodiv Sci    2023, 31 (7): 22587.   DOI: 10.17520/biods.2022587
Accepted: 31 July 2023

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Aims: Data-based knowledge of species diversity distribution in natural reserves is fundamental for the adaptive protection and management of natural reserves. However, species diversity patterns have been rarely examined comprehensively across the entire areas of majority of natural reserves. This study aims to explore spatial variation in woody species diversity across the Qianjiangyuan National Park, as well as among subareas based on functional divisions.

Methods: A total of 663 plots, each measuring 20 m × 20 m, were surveyed across the national park. Within these plots, all individuals of DBH (diameter at breast height) ≥ 1 cm were identified to species and measured for DBH. Using this comprehensive dataset, we analyzed and presented the spatial pattern in observed species richness, rarefaction species richness, cross-sectional area at breast height (ADBH), and the number of tree individual number across the national park. Furthermore, we compared those variables among subareas based on functional divisions, emplying various statistical comparison techniques such as z-test, Max-t test, Siegel-Tukey test, and Fligner-Killeen test. These analytical methods allowed us to explore and understand the difference in the aforementioned variables between different functional divisions within the national park.

Results: The distribution of hotspots for woody species diversity basically matched core protection areas of the national park. Among the subareas, the Gutian subarea (GTs), Changheqi subarea (CHQs), and Gutian-Suzhuang subarea (GSs) showed the highest levels of observed and rarefaction species richness. There were no significant differences in observed species richness among these three subareas, and rarefaction species richness was also statistically similar for GTs and GSs, both of which were higher than CHQs. The variations in species richness indices were the smallest for GTs and GSs. Regarding the ADBH, the Qixi subarea (QXs), CHQs, and GTs had the largest values, with no significant difference among them. However, GSs had a significantly smaller ADBH compared to CHQs and GTs. The subareas GTs and GSs had the lowest number of tree individuals. As for the Changhong and Hetian towns, the Changhong-Hetian subarea (CHs) and Gutian-Hongyuan subarea (GHs) exhibited the smallest in both species richness and ADBH.

Conclusion: In conclusion, our findings support the basic reasonability of the functional divisions within the national park in terms of biodiversity. We have identified important biodiversity hotspots and conservation gaps: the GTs stands out as having the largest trees and the highest woody species richness. Adjacent to GTs, the GSs exhibits similar species richness but with smaller trees. Integrating GSs into the core protection area would be beneficial for safeguarding the overall integrity of the main ecosystem's integrity in the national park; within the CHQs, the part encompassing Changhong and Hetian towns showed poor woody species diversity, with small trees and high human-disturbance. These areas require strengthened protection and restoration efforts to enhance biodiversity; CHs and GHs displayed low species richness, characterized by small trees and strong human-disturbance. In these regions, it is essential to establish synergies between community development and biodiversity protection to promote conservation. By extending knowledge of biodiversity hotspots and conservation gaps, our study provides valuable support for the adaptive protection and management of biodiversity within the national park. Our findings can be used to guide targeted conservation strategies and ensure the sustainable protection of the park's unique ecological treasures.

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The neglected giant: Alfred Russel Wallace
Zhang Jian, Wang Zhiheng, Che Jing, Wang Yanping, Ma Keping
Biodiv Sci    2023, 31 (12): 23500.   DOI: 10.17520/biods.2023500
Accepted: 08 January 2024

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A dataset on inventory and geographical distributions of higher plants in Guangdong, China
Zhuqiu Song, Wen Ye, Shiyong Dong, Zichao Jin, Xingjie Zhong, Zhen Wang, Buyun Zhang, Yechun Xu, Wenli Chen, Shijin Li, Gang Yao, Zhoufeng Xu, Shuai Liao, Yihua Tong, Youpai Zeng, Yunbao Zeng, Yousheng Chen
Biodiv Sci    2023, 31 (9): 23177.   DOI: 10.17520/biods.2023177
Accepted: 13 October 2023

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Guangdong Province has a rich diversity of higher plants, ranking it sixth in China. This study compiles an updated dataset of higher plants with county-level records in Guangdong Province by drawing from sources including floras, illustrated plant books, nature reserve plant checklists, academic papers, dissertations, specimens, photos from the Plant Photo Bank of China, and our own field surveys. The resulting dataset details distributions of various taxa in specific counties and cities. As of July 2023, this dataset contains 8,106 taxa from 374 families and 2,284 genera of higher plants in Guangdong. Native wild higher plants account for 6,864 taxa from 350 families and 1,828 genera, where bryophytes (including hornworts, liverworts and mosses) makeup 865 taxa from 96 families and 272 genera, lycopods and pteridophytes account for 642 taxa from 36 families and 123 genera, gymnosperms total 35 taxa from 7 families and 17 genera, and angiosperms makeup 5,322 taxa from 211 families and 1,416 genera. In addition, 17 species are here reported new to the Guangdong Province. The families with the largest number of species are Poaceae, Fabaceae, Orchidaceae, Cyperaceae, Rubiaceae, Lamiaceae, Asteraceae, Rosaceae, Lauraceae and Gesneriaceae. This dataset also includes 323 invasive species from 58 families and 204 genera, 257 species of naturalized plants from 62 families and 206 genera, and 662 species of common cultivated plants from 129 families and 441 genera. Furthermore, this study provides a list of higher plants with excluded and dubious records; this list encompasses includes 905 species from 182 families and 545 genera. This dataset will provide foundational information and a framework for the second edition of Flora of Guangdong.

Database/Dataset Profile

Title A dataset on inventory and geographical distributions of higher plants in Guangdong, China
Authors Zhuqiu Song, Wen Ye, Shiyong Dong, Zichao Jin, Xingjie Zhong, Zhen Wang, Buyun Zhang, Yechun Xu, Wenli Chen, Shijin Li, Gang Yao, Zhoufeng Xu, Shuai Liao, Yihua Tong, Youpai Zeng, Yunbao Zeng, Yousheng Chen
Corresponding author Yousheng Chen (yschen@scbg.ac.cn)
Time range 1923-2023.7
Geographical scope Guangdong Province
Spatial resolution District (County)
File size 6.45 Mb
Data format *.xlsx
Data link https://www.scidb.cn/en/s/JzQfqa
https://doi.org/10.57760/sciencedb.10170
https://www.biodiversity-science.net/fileup/1005-0094/DATA/2023177.zip
Database/Dataset composition The dataset consists of 1 data file with 72,279 items (rows) and 20 fields (columns) as following: number, categories, sequence number of family, Chinese name of family, Latin name of family, Chinese name of genus, Latin name of genus, Chinese name of species, Latin name of species, author, rank notes, growth status, county-level distribution, literature, literature notes, specimen vouchers, endemic and protected plants, Latin names in The Provincial Red List of Higher Plants in Guangdong (2022), Latin names in Flora of China, and Latin names in Catalogue of Life China: 2022 Annual Checklist.
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Diversity and elevational distribution of birds and mammals based on infrared camera monitoring in Guangdong Nanling National Nature Reserve
Zhifa Liu, Xincai Wang, Yuening Gong, Daojian Chen, Qiang Zhang
Biodiv Sci    2023, 31 (8): 22689.   DOI: 10.17520/biods.2022689
Accepted: 14 August 2023

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Aims: The relationship between the elevation and biodiversity has long been one of the central issues in ecology, biogeography and conservation biology. This study investigate the diversity of birds and mammals and their elevational distribution, based on infrared camera monitoring in Guangdong Nanling National Nature Reserve, China.
Methods: We utilized infrared cameras to monitor the mammals and birds across the entire elevation of the Guangdong Nanling National Nature Reserve for 10 consecutive years. In addition, we also analyzed the current diversity and conservation status of birds and mammals. By combining both horizontal and vertical distribution patterns, we conducted hotspot and vacancy analysis to assess the diversity patterns of birds and mammals.
Results: Between 2012 and 2021, a total of 116 camera sites were deployed, capturing 85,164 days of work, and obtaining 21,194 identifiable independent and valid photos. Over this period, 24 mammal species and 50 bird species were recorded, with a relatively high proportion of threatened mammals at 45.83%. The top five mammals with the highest relative abundance index (RAI) were Muntiacus vaginalis, M. reevesi, Dremomys pyrrhomerus, Melogale moschata, and Macaca thibetana. However, Herpestes javanicus and Rusa unicolor were only recorded once and have the lowest RAI. The top four birds with the highest RAI were Lophura nycthemera, Myophonus caeruleus, Tragopan caboti and Arborophila gingica. Forty-two bird species had RAI less than 1, mainly belonging to Passeriformes, Piciformes and Strigiformes. The generalized additive model showed that the richness of mammals and birds were significantly related to elevation, displaying a typical “single-peak pattern” with a significantly high species richness at mid-elevation (around 1,000-1,400 m). Beta diversity analysis showed that the classification differences between the low and high elevational range and other sites were the highest, while the differences between the middle elevational sites were relatively small. Hotspot and vacancy analysis, integrating horizontal and vertical distributions, revealed that the mammals and birds in the reserve were mainly concentrated in three hotspots, distributed in the middle and high elevation. In addition, it was observed that certain areas outside of the reserve also exhibited a high diversity of birds and mammals. In conclusion, wildlife within the reserve continues to face severe protection pressure.
Conclusion: Regarding the construction of Nanling National Park, we suggest that the local management organization should: (1) Formulating conservation and management policies for key protected species in the future, especially for large and medium-sized mammals. (2) Focusing on the habitat management in the middle and high elevational areas, and maintain the complete climate and biological vertical zone in the reserve. (3) Establishing a multitrophic biodiversity monitoring system, which emphasis the effect of comprehensive factors on wildlife, such as human disturbance, environmental factors, functional traits, species interaction networks, and evolution history.

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The current situation of horseshoe crabs in the offshore waters of northern South China Sea with analysis of the potential habitat distribution of juvenile Tachypleus tridentatus in Beibu Gulf
Yuyuan Bao, Yinkang Li, Wuying Lin, Zhiqin Zhou, Xiaobo Xiao, Xiaoyong Xie
Biodiv Sci    2023, 31 (5): 22407.   DOI: 10.17520/biods.2022407
Accepted: 01 January 2023

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Aims: The horseshoe crab population in the areas surrounding China have declined dramatically due to overfishing, environmental pollution, and habitat loss. In 2019, Tachypleus tridentatus was listed in the IUCN Red List as Endangered category. However, the current literature on horseshoe crabs within China is inadequate, adversely affecting the conservation of the species. This paper aims to assess the current situation of horseshoe crabs in the offshore waters of the northern South China Sea and determine the potential distribution of the T. tridentatus in the Beibu Gulf.
Methods: In 2018 and 2019, trawl sampling was used in the adult horseshoe crab survey in the northern coastal waters of the South China Sea, with a total of 99 sampling sites. For the investigation of juvenile T. tridentatus population in the intertidal zones, 10 and 14 investigation points were set up in 2019 and 2020 respectively. Using our survey results, a maximum entropy (MaxEnt) model was used to analyze the potential habitat of juvenile T. tridentatus along the Beibu Gulf.
Results: In the survey, 18 horseshoe crabs were found at only 15 of the 99 sites. Among them, 9 horseshoe crabs were found at 7 sites in 2018 and 9 at 8 sites in 2019. The abundance of juvenile T. tridentatus in the Beibu Gulf was determined to be 0.01-0.33 ind./100 m2 in 2019 and 0.01-0.65 ind./100 m2 in 2020. According to the results of the MaxEnt model, 18.39% of the intertidal zone along the Beibu Gulf coast is highly suitable for juvenile horseshoe crabs.
Conclusions: Adult horseshoe crabs in the offshore waters of northern South China Sea are sparsely distributed and mainly concentrated in the Beibu Gulf. Of the areas along the coast of Guangxi in the Beibu Gulf, Suixi County in Guangdong and Xinying Bay in Hainan are the most highly suitable areas for juvenile horseshoe crab. Therefore, we should focus on strengthening the protection of these areas.

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Invasion status and control measures for alien plants within the Gaoligong Mountains
Yu Xiao, Yuran Li, Hexiang Duan, Zhengtao Ren, Shengbi Feng, Zhicheng Jiang, Jiahua Li, Pin Zhang, Jinming Hu, Yupeng Geng
Biodiv Sci    2023, 31 (5): 23011.   DOI: 10.17520/biods.2023011
Accepted: 12 May 2023

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Aims: The Gaoligong Mountains are crucial biodiversity hotspots in China serving as Southwest China’s vital ecological security barrier. The impact of climate change and anthropogenic activity has led to a severe invasion of alien plants in the Gaoligong Mountains, posing significant threats to their ecological integrity and biosecurity. This study seeks to provide a comprehensive overview of the invasion status of alien plants and propose relevant control measures to safeguard the eco-security of the Gaoligong Mountains.
Methods: This study conducted systematic field investigations and combined information from previous literatures, to reveal the current invasion status of alien plants. The distribution range, recording frequency, distribution status, and impact were compiled to evaluate the invasion grade of each invasive plant in the Gaoligong Mountains.
Results: The study identified 225 alien plants from 50 individual families in the Gaoligong Mountains. Among these species, 214 species were categorized as alien invasive plants and 11 as alien cultivated plants. The Compositae family accounted for the highest proportion, which was 17.29%, followed by Fabaceae (14.02%), Euphorbiaceae (7.01%), and Amaranthaceae (6.54%). Most invasive and naturalized plants originated in the Americas, accounting for 67.76% (145 species), followed by Asia (17.76%). The numbers of species assessed as risk grade 1 and 2 were 15 and 27, respectively, and some species had a high invasion risk despite not currently causing apparent harm.
Conclusion: The taxonomic compositions, and origins of alien plants in the Gaoligong Mountains are complex, and their geographic origins characterize their invasion grade. Management of alien invasive plants should be species-specific according to their invasion grade to improve comprehensive control efficiency. These results could significantly contribute to better management practices for alien plants in the Gaoligong Mountains and provide valuable information for the Gaoligong Mountains National Park.

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Kunming-Montreal Global Biodiversity Framework and the construction of the national botanical garden system
Jin Chen
Biodiv Sci    2023, 31 (9): 23257.   DOI: 10.17520/biods.2023257
Accepted: 18 September 2023

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Aim: The adoption of the Kunming-Montreal Global Biodiversity Framework by the 15th Meeting of Conference of the Parties to the Convention on Biological Diversity signifies another collective effort by the international community to tackle the ongoing biodiversity crisis. It also marks the beginning of China’s leadership in global environmental governance. The establishment of the national botanical garden system serves as an innovative practice to biodiversity conservation. This article aims to examine the potential of the national botanical garden system in facilitating the implementation of the Kunming-Montreal Framework in China.

Method: Through an analysis of the Kunming-Montreal Framework’s long-term objectives and specific targets for the year 2030, this study identifies the essential inquiries and conservation actions that can be implemented by the national botanical garden system in China.

Results: This study outlines 26 research questions and 27 conservation actions that can be undertaken by the national botanical garden system. Furthermore, it highlights 7 priority actions that should be given immediate attention. These include conducting a thorough survey of plant species, examining the genetic diversity of nationally protected plants, implementing conservation strategies to mitigate plant extinctions in critical biodiversity areas, executing ecological restoration plans, conducting research on climate change adaptation, promoting education on conservation and sustainable development, and fostering international cooperation in biodiversity conservation.

Conclusion: The establishment of the national botanical garden system in China not only strengthens China’s capacity to implement the Kunming-Montreal Framework, but also provides a valuable opportunity to evaluate the innovative accomplishments of this system. The successful implementation of this initiative will serve as a benchmark and source of inspiration for other countries worldwide with significant biodiversity.

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Additions to the seed plant flora in Yunnan, China
Hongbo Ding, Liyan Wang, Dongli Quan, Bin Yang, Mamai Yue, Pingyuan Wang, Yongjingwen Yang, Qiangbang Gong, Shishun Zhou, Li Wang, Jianwu Li, Yunhong Tan
Biodiv Sci    2023, 31 (10): 23254.   DOI: 10.17520/biods.2023254
Accepted: 09 October 2023

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Aim: The study aims to better understand plant diversity in the border areas of Yunnan. These border areas have relatively intact forest ecosystems but are poorly explored.

Methods: In this study, plants were collected and photographed through intensive field investigation, made into specimens, sorted and identified. The voucher specimens for each recorded species were deposited in the Herbarium of Xishuangbanna Tropical Botanical Garden of Chinese Academy of Sciences (HITBC), Herbarium of Institute of Botany of Chinese Academy of Sciences (PE), Herbarium of Kunming Institute of Botany of Chinese Academy of Sciences (KUN) and Herbarium of Xiamen University (AU).

Results: One new record family, namely Aptandraceae (Anacolosa griffithii), two new record genera, namely Pottingeria (P. acuminata), Cordisepalum (C. phalanthopetalum), thirty new record species, namely Phlogacanthus gomezii, Staurogyne shanica, Hydnocarpus macrocarpus, Alphonsea ventricosa, Huberantha jenkinsii, Miliusa chantaburiana, M. dioeca, Impatiens andersonii, Garcinia lanceifolia, Dillenia parviflora, Parashorea buchananii, Castanopsis birmanica, Heritiera burmensis, Phrynium pubinerve, Bulbophyllum obrienianum, B. sinhoense, Dendrobium dantaniense, D. parcum, Epipactis flava, Eulophia macrobulbon, Micropera mannii, Vanilla borneensis, Phyllanthus discofractus, P. mirabilis, Maesa tomentella, Sabia wardii, Ailanthus integrifolia subsp. calycina, Wikstroemia floribunda, Hedychium gardnerianum, Monolophus linearis, were reported for the flora of China.

Conclusion: The border area of Yunnan possesses one of the richest floras in China, but the floristic survey in this area is still inadequate. Therefore, intensive floristic surveys are needed to be strengthened in the future to obtain reliable information on the flora of the border areas of Yunnan.

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Ex situ conservation of plant diversity status and suggestions for the development of botanical gardens in Guangdong Province
Shiyu Li, Yiqi Zhang, Pu Zou, Zulin Ning, Jingping Liao
Biodiv Sci    2023, 31 (6): 22647.   DOI: 10.17520/biods.2022647
Accepted: 21 June 2023

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Aims: The evaluation of living plant collections is critical for botanical garden to formulate conservation strategy and future development plans. This paper studies the current geospatial distribution of Guangdong botanical gardens and their status quo and problems of ex situ collections of plant diversity, aims to provide references for an updated conservation strategy of South China National Botanical Garden, a conservation network of Guangdong botanical gardens and the development of China’s national botanical gardens system.

Methods: On the basis of investigation, we identify the geographic locations and vegetation zones of the all 15 botanical gardens in Guangdong Province with reference to the literature analysis of Chinese vegetation and Guangdong vegetation. According to the plant lists provided by the 12 botanical gardens, we quantify the living plant diversity in ex situ collections, analyze phylogenetic bias, threatened species representation and useful plant composition by synthesis of updated taxonomy, conservation categories and economic uses.

Results: (1) There is an obvious bias in the distribution of Guangdong botanical gardens from the natural vegetation areas. The gardens are only located in the south subtropical monsoon evergreen broad-leaved forest zone and the north tropical semi-evergreen monsoon forest zone, but no one in the middle subtropical zone. (2) We reveal that the Guangdong botanical gardens manage at least 15,026 species, belonging to 3,030 genera in 329 families. Of which, there are 9,068 vascular plant species native to China, belonging to 2,131 genera in 275 families, equating to 23% of the known vascular plant diversity in China. (3) Phylogenetic analysis indicates that the Guangdong botanical gardens hold a remarkable degree of taxonomic coverage within ex situ living collections for Guangdong native vascular plants, accounting for 95% of the family, 80% of the genera, and 58% of the species, respectively. (4) The analysis of threatened status and key conserved species shows that the Guangdong botanical gardens preserved 64% of the provincial threatened vascular plants native to Guangdong, and 83% of the wild vascular plants distributed in Guangdong Province and listed in the List of National Key Protected Wild Plants (version 2021). (5) The analysis of useful plant collections shows that the Guangdong botanical gardens held 72% of the vascular plants in Guangdong Province in ex situ living collections, covering all the useful categories that are currently common, and the resource preservation rate of each category exceeds 69%.

Conclusion: The results indicate that Guangdong botanical gardens play an important role in plant diversity conservation, but they should be integrated with in situ conservation institutions and adopted an updated conservation strategy to enhance future biodiversity conservation. We put forward some suggestions: (1) improving the regional ex situ conservation network system, with the South China National Botanical Garden as the core, geographical distribution of ex situ institutions and their integration with the natural reserve system. (2) building a comprehensive preservation capacity system for national collections, focus on increasing research collections of key taxa, undertake conservation collections of priority threatened species and coordinate core collections of germplasm, to expand both conservation efficiency and the utilization of wild plants resources. (3) establishing an experiment research system of “nursery cultivation-artificial community-inter situ planting” for key endangered species, implement an integrated conservation research plan, and promote plant diversity conservation, scientific research and sustainable use.

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Species diversity of intertidal crabs (Decapoda: Brachyura) of Dongzhaigang National Nature Reserve, Hainan Province
Erhui Feng, Weinuo Liang, Liang Hu, Xu Zhang
Biodiv Sci    2023, 31 (9): 23030.   DOI: 10.17520/biods.2023030
Accepted: 25 May 2023

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Aim: Brachyuran crabs are one of the important representatives of large benthic invertebrates in intertidal habitats and also an important component of mangrove wetland ecosystem. Dongzhaigang National Nature Reserve (DZGNNR) in Hainan preserves the most typical mangrove wetland ecosystem in China. It is also one of the key areas in the marine biogeographic division of East Asia. However, limited knowledge on intertidal crab species richness and unclear fauna characteristics in this area. Based on a comprehensive field survey combined with previous studies, we have cataloged an updated checklist of intertidal crabs of DZGNNR.

Method: The field survey was conducted in the intertidal zone of DZGNNR between September and November of 2022. During this time, 16 sampling sites were investigated and a total of 207 specimens were collected and identified. The species recorded in previous documents were reassessed and each taxon was revised according to the recent researches.

Results: During the field survey, we collected a total of 64 species of brachyuran crabs from 17 families and 39 genera. Out of these, 22 species were previously undocumented in DZGNNR, and two species were newly discovered in Hainan Province (Elamena rostrata and Parasesarma ungulatum). The updated checklist of brachyuran fauna of DZGNNR now includes 115 species belonging to 22 families and 63 genera.

Conclusions The intertidal brachyuran fauna of DZGNNR is mainly composed of East Asian warm water species, with Indo-West Pacific warm water elements being the most prevalent. This indicates that the DZGNNR is part of the northern South China Sea Subtropical Provinces in terms of its zoobenthic fauna, similar to the intertidal brachyuran fauna found in Guangxi, Guangdong and Fujian. Our study provides new insights on the brachyuran fauna of DZGNNR and north Hainan Island, which improve our understanding of zoobenthic biogeographical patterns in northern South China Sea.

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Ecological impacts of centralized large-scale photovoltaics and wind farms: Progress and prospects
Peng Yunyue, Luo Yongmei, Xu Zenan, Jin Tong
Biodiv Sci    2024, 32 (2): 23212.   DOI: 10.17520/biods.2023212
Accepted: 07 December 2023

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Background and AimsDriven by China’s carbon neutrality goals, renewable energy is growing drastically, spurring the large-scale development of photovoltaics (PVs) and wind power. Despite this prevalence, systematic reviews detailing the ecological concerns associated with these technologies are scarce.

Method We provide an overview of domestic and international research on the environmental impact of centralized PV and onshore wind farms, focusing on species diversity and ecosystem services.

Results PVs and wind farms both alter climate factors, including temperature, humidity and wind speed. The construction of PVs and wind farms damages vegetation, causing soil erosion and water loss. Construction also results in solid waste and wastewater, contributing to pollution around the site. The ecological impact of PVs is mainly reflected by changes in vegetation and habitat quality, which can have adverse effects on certain species. In relatively arid areas, PVs can play a role in lowering temperatures and increasing humidity, promoting vegetation recovery. In desert areas, they can act as windbreaks. Wind farms can result in soil and vegetation disturbances, bird collisions and mortality, and habitat fragmentation, all of which affect species migration and regional ecosystem services. Despite these potential issues, current research remains insufficient in assessing ecological impact systematically.

Prospects We recommend research focusing on three particular areas: (1) Improving and unifying survey methods for accessing ecological impacts on centralized PVs and wind farms; (2) Adopting advanced ecological survey techniques; and (3) Strengthening systematic studies on ecological impacts at the species and ecosystem levels. Moving forward, it is necessary to study the ecological impacts of PVs and wind farms in depth. Biodiversity assessments should be implemented at the early stages of energy planning, and corresponding mitigation strategies should be adopted.

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The main features of the world-class national botanical garden with Chinese characteristics
Hai Ren, Tuo He, Shifeng Wen, Hui Dong
Biodiv Sci    2023, 31 (9): 23192.   DOI: 10.17520/biods.2023192
Accepted: 18 July 2023

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Aim: The State Council approved the establishment of the National Botanical Garden in Beijing in December, 2021 and the South China National Botanical Garden in Guangzhou in May, 2022. These two gardens will be developed into world-class botanical gardens with distinctive Chinese characteristics where all forms of life coexist harmoniously. This paper explores the main features of world-class national botanical gardens from the perspectives of historical, functional and mission dimensions, aiming to provide reference for the construction of China’s national botanical garden system.

Methods: Based on the five different evaluation criteria of botanical gardens in the world and China, we summarized the attributes of 12 renowned botanical gardens in the world and 5 well-performing botanical gardens in China. A new evaluation system of botanical gardens was proposed after extensive literature review and consensus among peers. The main features of world-class botanical gardens were identified based on this system and the evaluation process.

Results: The national botanical garden should possess national representativeness, scientific systematicness, and social public welfare. A world-class botanical garden should demonstrate strong international competitiveness in areas such as plant conservation, scientific research, public education, garden horticultural display, and resource utilization while leading the development of other botanical gardens. Chinese characteristics refer to the gradual formation of unique attributes through long-term practice, encompassing characteristics of Chines ethnic plants, traditional culture, garden art, institutional mechanisms, and more. From the perspectives of historical, functional, and mission dimensions, the main features of a world-class national botanical garden with Chinese characteristics include: (1) It possessed a significant development history, actively engaging in the conservation, research, and utilization of wild plants in response to the country’s economic and social development and the public’s aspiration for a better life. Furthermore, it has a certain influence in the field of botanical gardens both domestically and internationally; (2) The botanical garden demonstrated leaderships, either partially or completely, in five functional domains: ex situ conservation of wild plants, scientific research, sustainable resource utilization, public education, and garden horticultural display; (3) It serves as a vital component of major national strategies, ensuring national ecological security, biosecurity, and food security. Additionally, it contributes to national or global biodiversity conservation, restoration of degraded ecosystems, mitigation of climate change, and sustainable development through the application of science and technology.

Conclusion: The construction of China’s national botanical garden should align with internationally renowned botanical garden, guided by mission goals, with a focus on the relocation and conservation of wild plants. It should adhere to national representativeness, scientific systematicness, and social public welfare, coordinate in situ conservation and ex situ conservation, enhance the level of biodiversity conservation, tell the story of Chinese plant well, provide strong support for curbing the biodiversity loss and restoring degraded ecosystems, and provide innovative solutions to mitigate global climate change.

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The diversification history of Podophylloideae (Berberidaceae) and its underlying drivers
Fuyan Chen, Chih-Chieh Yu, Qiuyue Zhang, Jian Huang, Yaowu Xing
Biodiv Sci    2023, 31 (7): 23100.   DOI: 10.17520/biods.2023100
Accepted: 22 July 2023

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Aims: In this study, our objective is to test the hypothesis that species-rich group possess higher net diversification rates. We focus on the subfamily Podophylloideae in Berberidaceae as our study system. Additionally, we aim to investigate the combined effects of biotic and abiotic factors on diversification rates.

Methods: We reconstructed the phylogeny of Podophylloideae by using 77 chloroplast CDS genes and employing both maximum likelihood and Bayesian inference methods. To estimate divergence time, we used one second calibration and two fossil calibrations. Net diversification rates through time were estimated using BAMM. Additionally, we employed Hidden State Speciation and Extinction analysis (HiSSE) and Quantitative State Speciation and Extinction analysis (QuaSSE) to estimate the effect of four functional traits on diversification rates.

Results: Molecular dating, based on 77 chloroplast CDS genes, showed that Podophylloideae originated approximately 92.75 Myr (95% HPD, 86.84‒95.84 Myr) with a crown age of 85 Myr (95% HPD, 73.19‒94.94 Myr). The net diversification rate began to increase around 23 Myr ago, and the most significant rate shift accrued approximately 21 Myr along the Epimedium stem branch. The analysis of state-dependent diversification rate indicated that taxa with nectar spur in subtropical East Asia possessed a higher net diversification rate. However, the specific spur length in Epimedium did not have a significant effect on net diversification rate. Furthermore, fruit type, the presence of aril, or the presence of aerial stems did not exert any significant effect on net diversification rate.

Conclusions: Our results suggest that the variation in net diversification rates is driven by the presence of nectar spur and the intensification of the East Asian monsoon since the Miocene, which has shaped the discrepancy in species diversity in Podophylloideae.

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Parallel situ conservation: A new plant conservation strategy to integrate in situ and ex situ conservation of plants
Chen Feng, Jie Zhang, Hongwen Huang
Biodiv Sci    2023, 31 (9): 23184.   DOI: 10.17520/biods.2023184
Accepted: 12 October 2023

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Background & Aims In the realm of plant conservation, in situ conservation often faces challenges that stem form climate change and unresolved issues. On the other hand, ex situ conservation poses genetic risks linked to the erosion of genetic diversity and genetic drift. This paper conducts a systematic review of the merits and limitations associated with both in situ and ex situ plant conservation. Furthermore, it amalgamates hybridization analysis within natural populations with previous research findings to elucidate the role of long-distance pollen dispersal in gene flow.

Progresses We introduce an innovative conservation approach termed “parallel situ conservation”, which integrates elements of both in situ and ex situ conservation. This methodology is conceived with a focus on the dynamics of gene flow, using pollen dispersal as a means to sustain genetic exchanges between the in situ and ex situ populations. In practice, it is imperative to establish ex situ conservation collections in proximity to or within in situ areas, such as natural reserves, while considering the range of pollen dispersal. This step is crucial in ensuring robust gene flow between ex situ population and their natural populations. This integration allows small ex situ-conserved populations to connect to the gene pool of large natural populations, effectively safeguarding the adaptive evolutionary potential of the ex situ-conserved species, particularly those that are rare and endangered.

Prospect The effectiveness of this approach hinges on species-specific solutions derived from a comprehensive understanding of pollen-mediated gene flow and thoughtful design of ex situ conservation plot. Parallel situ conservation, when combined with other existing plant conservation strategies, holds promise for the future preservation of biodiversity.

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Effects of grazing on bees and suggestions for its ecological restoration
Qiujie Zhao, Huijun Guo, Guangtao Meng, Mingchuan Zhong, Jun Yin, Zhuocheng Liu, Pinrong Li, Li Chen, Yi Tao, Sheng Qiu, Hong Wang, Yanhui Zhao
Biodiv Sci    2023, 31 (5): 23037.   DOI: 10.17520/biods.2023037
Accepted: 25 April 2023

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Background & Aims: Overgrazing poses a dominant threat to the biodiversity of most grassland communities. Bees are the primary pollinator group in the grassland ecosystem. Grazing has generally negative effects on bee diversity by affecting floral and nesting resources in grassland communities. However, in communities with long grazing history and reasonable grazing management, grazing may have a positive or neutral impact on bee diversity. Therefore, how grazing affects bee diversity and its role in ecological restoration needs further study.
Progress:
In this study, we integrate the recent literature and research practice, and propose that the efficacy of bee restoration can be more accurately assessed through the integration of bee species richness, functional diversity, phylogenetic diversity and full plant-pollinator interaction networks, which provide comprehensive and quantitative information on the structure and function of grassland communities. For grasslands with low degradation, bees can be gradually recovered by effective grazing management, which uses the natural recovery potential of the communities. For grasslands with greater degradation, it is necessary to accelerate the bee restoration through active interventions on the basis of grazing management, such as sowing wildflower species that cannot migrate into the restoration area without assistance and enhancing the availability of nesting habitat for bees. To ensure that bees can obtain enough floral rewards in different flowering periods, the selection and combination of the sown flower species should take into account their roles in the pollination network, floral traits and flowering phenology.
Perspective: It is of great practical significance to investigate the mechanism of bee loss in different types of grasslands in southern and northern China, and to guide the development of targeted ecological restoration strategies for bees.

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Records and population status of sea turtles in the Zhejiang sea area of China
Jingxuan Chen, Jiajun Zhou, Baoquan Liu
Biodiv Sci    2023, 31 (6): 23082.   DOI: 10.17520/biods.2023082
Accepted: 21 June 2023

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Aims: The waters of Zhejiang Province in China host five species of sea turtles under first class protection in the List of National Key Protected Wildlife: the leatherback (Dermochelys coriacea), the green turtle (Chelonia mydas), the loggerhead (Caretta caretta), the hawksbill (Eretmochelys imbricata), and the olive ridley (Lepidochelys olivacea). Due to insufficient studies of sea turtles in the area, sea turtles in this region are not well understood. Therefore, we conducted a large-scale survey in the region and explored the population status of the five species.

Methods: We retrieved and collected records of sea turtles in Zhejiang Province from various internet platforms, especially short-form video records from Chinese fishermen taken from August 1st, 2018 to December 31st, 2022, and thereby analyzed species composition and abundance in the region.

Results: In total, we identified 109 records of sea turtles in this region from April 1st, 1981 to December 31st, 2022, comprising 234 individuals, among which 79.1% are loggerheads, 9.4% are green turtles, 6.0% are leatherbacks, 4.3% are olive ridleys and 1.3% are hawksbills. The majority of the records were obtained from short-form video platforms.

Conclusions: These results indicate that loggerheads make up the largest proportion of the sea turtle population in the sea areas of Zhejiang Province, followed by the green, the leatherback, the olive ridley, and finally the hawksbill. The results prove that the East China Sea is of great importance to the turtles, especially the loggerhead. The study also proves the significance of citizen science projects in the daily monitoring of marine reptiles.

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Application of environmental RNA technology in aquatic biological monitoring
Miao Li, Chenyang Yao, Xiaoyong Chen
Biodiv Sci    2023, 31 (5): 23062.   DOI: 10.17520/biods.2023062
Accepted: 03 May 2023

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Background & Aims: Biological monitoring is a core component of biodiversity conservation, and an important tool for assessing the progress of conservation efforts. Traditional aquatic monitoring methods are often based on specimen collection and morphological identification, which are time-consuming and ineffective practices. Additionally, these methods are unable to conduct the type of large-scale, continuous ecological surveys that are required for many conservation initiatives. There is therefore an urgent need to find a new approach to monitoring to meet today’s growing biodiversity surveillance needs.
Progresses & Challenges: As molecular biology tools have improved, environmental RNA technology has been introduced into the field of aquatic biomonitoring and applied to species monitoring, biodiversity assessment, and pathogen detection, showing significant potential to meet conservation needs. However, the development of environmental RNA technology is still at the proof-of-concept stage, and there are many technical drawbacks, including limited understanding of environmental RNA ecological processes, the inconsistent application of the technology and, the lack of a transcriptome database that limits its ability to be used in aquatic biomonitoring.
Review Results: In this review, we first give a brief introduction to environmental RNA technology. We then introduce the analysis process of environmental RNA technology and discuss in detail what information should be noted in the sample collection and preservation process, the environmental RNA extraction and cDNA synthesis process, PCR amplification and sequencing, and analysis of results. Next, we present the current status of the application of environmental RNA technology in three areas: species monitoring, biodiversity assessment, and pathogen detection. Further, we also discuss problems associated with environmental RNA technology in practical applications. Finally, we summarize the strengths and weaknesses of environmental RNA technology. We identify two primary advantages of environmental RNA technology: (1) environmental RNA technology can further improve the accuracy of biomonitoring; and (2) environmental RNA technology can reveal additional relevant information, such as the structural composition of populations, the physiological status of organisms, and the health of ecosystems. The shortcomings of environmental RNA technology are as follows: (1) the ecological processes of eRNAs released into the environment are unclear, which may lead to false positive and false negative errors; (2) the application of environmental RNA technology is not standardized, which makes it impossible to compare the results between different studies; and (3) the lack of a transcriptome database will limit the further development of environmental RNA technology in aquatic biomonitoring. In order to make full use of environmental RNA technology, these shortcomings must be addressed as soon as possible.
Going Forward: In the future, in order to properly apply environmental RNA technology in the field of aquatic biomonitoring, researchers should focus on the following aspects in their research: (1) to clarify the ecological processes of environmental RNA in the aquatic environment to reduce the probability of false positive and false negative errors; (2) to develop a standardized analysis process for environmental RNA technology so that the data obtained from aquatic biomonitoring using these approaches are accurate, reproducible and comparable; (3) to continuously improve the transcriptome database so that environmental RNA technology can be used for more biological assessments; and (4) to further expand the application of environmental RNA technology in aquatic biomonitoring, such as the use of environmental RNA technology to conduct research on the physiological conditions of aquatic organisms, population ecology and ecosystem health evaluation.

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Effects of landscape pattern dynamics on plant species and functional diversity in Hunshandak Sandland
Yasu Cao, Min Fan, Yu Peng, Jiaxun Xin, Nanyi Peng
Biodiv Sci    2023, 31 (8): 23048.   DOI: 10.17520/biods.2023048
Accepted: 05 September 2023

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Aims: Landscape pattern is an important driving factor that influences changes in plant species diversity (PSD) and plant functional diversity (PFD). The Hunshandak Sandland, a region in Inner Mongolia, is characterized by a variety of sand dunes, lakes, and built-up areas to form a complex and evolving landscape, which presents an ideal area to elucidate these mechanisms.
Methods: In this study, we processed remote-sensing images from 2008-2017 from the study area and conducted field surveys and analysis to investigate PSD and PFD. Spearman correlation analysis and general linear mixed model were employed to identify landscape pattern indices that significantly contributed to PSD and PFD. Furthermore, a structural equation model was utilized to determine both the direct and the indirect effects of dynamic changes in the landscape pattern on PSD and PFD.
Results: The results indicated that both PSD and PFD were influenced by landscape patterns from the previous 2-4 years. We discovered that PSD was primarily influenced by shape index, area and edge index, and aggregation index and were relevant in different timescales and land use types. PFD was predominantly affected by shape index and aggregation index.
Conclusion: The dynamics of landscape pattern must be considered in the process of landscape planning, management, and conservation of biodiversity in arid and semi-arid lands in Inner Mongolia and could be translated to similar regions worldwide.

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Investigation of the diversity of mammals and birds and the activity rhythm of dominant species using camera trapping in a fragmented forest in the Dujiangyan region, Sichuan Province
Kunming Zhao, Shengbin Chen, Xifu Yang
Biodiv Sci    2023, 31 (6): 22529.   DOI: 10.17520/biods.2022529
Accepted: 16 June 2023

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Aims: The impacts of habitat fragmentation on biodiversity are a critical research area in ecology and conservation biology. However, there is still insufficient understanding of how habitat fragmentation affects species diversity and activity rhythm. The purpose of this study is to investigate the diversity of birds and animals in fragmented forests and to explore the effects of patch size and stand age on the diversity of mammals and birds, as well as the daily activity rhythm of dominant species.

Methods: From July 2018 to July 2021, researchers used infrared cameras to survey mammal and bird species in 21 fragmented forest patches located in the Dujiangyan region of Sichuan Province. The “vegan” package in R was used to generate the species accumulation curve; the linear mixed model of the “lme4” package in R was used to analyze the relationship between species richness and relative abundance index, and factors such as patch sizes, stand ages, and seasonal variations; the “overlap” package and “activity” package in R were used to analyze the daily activity rhythm and niche overlap of two dominant species and anthropogenic activities, through kernel density estimation and coefficient of overlap analyses.

Results: This study documented a total of 63 species of wild animals, which belonged to 10 orders and 25 families. These species included 52 species of birds and 11 species of mammals. Notably, 12 of the recorded species are Class-II national protected animals, such as Macaca thibetana, Prionailurus bengalensis, Chrysolophus pictus, and Tragopan temminckii; 7 species are endemic to China, including M. thibetana, Muntiacus reevesi, and Bambusicola thoracicus; 1 species (Arctonyx collaris) is red listed by the IUCN as Vulnerable (VU), and two species (M. thibetana and Elaphodus cephalophus) are listed as Near Threatened (NT). The research found that the species richness and relative abundance index of mammals increased as patch sizes increased. However, there was no significant correlation between bird species richness and relative abundance index, and patch sizes. Stand ages did not have significant correlations with the relative abundance index of mammals and birds. Furthermore, the study showed that the bird species richness and relative abundance index were significantly higher in the dry season than in the wet season. In contrast, the relative abundance index of mammals was significantly lower in the dry season than in the wet season, while mammal species richness did not significantly differ between the dry and wet season. The daily activity rhythm curves of the two dominant species (i.e., C. pictus and B. thoracicus) were highly overlapping and showed no significant niche differentiation; the overlap of daily activity rhythm increased as patch size but decreased with stand ages. In addition, the diurnal activity of the two dominant bird species showed a noticeable avoidance of anthropogenic activities during certain times.

Conclusion: Our findings indicate that forest fragmentation mainly affects mammal diversity and the daily activity rhythm of dominant birds. Therefore, it is crucial to enhance the use of new technologies such as infrared cameras to monitor, study and protect the diversity of wildlife in areas outside protected zones and national parks. Our results provide valuable insights for further studies on the impact of habitat fragmentation on biodiversity and species coexistence.

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2022 annual report on new taxa and nomenclatural changes of Chinese plants
Cheng Du, Jun Liu, Wen Ye, Shuai Liao
Biodiv Sci    2023, 31 (10): 23244.   DOI: 10.17520/biods.2023244
Accepted: 30 November 2023

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Aim: Plant species names undergo revisions and changes in response to deepening taxonomic research deepens and new discoveries. These valuable diverse pieces of information are scattered across various publications, requires necessitate timely consolidation into the Species Catalogue of China, under the guidance of taxonomic experts. To address this requirement, it is necessary to create a dataset containing information on new taxa, name changes, and the latest statuses of plants in China.

Methods: We collected data on newly discovered taxa and name changes for Chinese higher plants by reviewing 228 journals and monographs. This compilation involved 403 articles from 62 journals and 1 monograph, focusing on the new taxa and nomenclatural changes of higher plants in 2022.

Results: In 2022, China reported a total of 318 new taxa of higher plants, encompassing 12 new genera, 286 new species, 3 new subspecies, 10 new varieties, and 7 new forms. The recently described species fall into bryophytes (15 taxa), pteridophytes (28 species), gymnosperm (1 species), and angiosperms (362 taxa). Notably, 155 newly identified species have been published with detailed evidence covering molecular systematics, chromosomes, micromorphology, genome, etc. Among these, 92 species were considered as threatened according to IUCN standards. The majority of these discoveries originate from five southwestern provinces in China, namely Yunnan, Sichuan, Xizang, Guangxi, and Guizhou. Medog, a county-level unit, recorded the highest number of newly discovered species in 2022. Furthermore, 122 new combinations and 11 replacement names were transferred from other species. Additionally, 103 names were designated as synonyms for 76 taxa, while 4 names were re-accepted.

Conclusion: In 2022, China witnessed a net increase of 346 new taxa of higher plants, accounting for 0.89% of the total Chinese plant species. Additionally, 240 names of higher plants underwent changes, accounting for 0.62% of the total. These changes represented 1.5% of all Chinese plant names modified in 2022, encompassing both species additions and nomenclature treatments.

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Response of fish diversity to hydrological connectivity of typical tidal creek system in the Yellow River Delta based on environmental DNA metabarcoding
Zhiyuan Dong, Linlin Chen, Naipeng Zhang, Li Chen, Debin Sun, Yanmei Ni, Baoquan Li
Biodiv Sci    2023, 31 (7): 23073.   DOI: 10.17520/biods.2023073
Accepted: 26 April 2023

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Aims: Hydrological connectivity is essential for maintaining biodiversity in coastal wetlands, and it is important to understand the response of fish diversity, as a major component of biodiversity, to different hydrological connectivity intensities. This study aimed to investigate the response of fish diversity to hydrological connectivity in the typical tidal creek system and verify the applicability of eDNA metabarcoding for monitoring and conserving fish diversity in the Yellow River Delta.

Methods: Water samples were collected from six sites in a typical tidal creek system in the Yellow River Delta in September 2022. Fish diversity was analyzed by using eDNA metabarcoding, in which, eDNA extracted from the water samples source were amplified by PCR using the 12S rRNA classical fish primers MiFish-E and high-throughput sequencing was performed by Illumina Miseq. The OTU representative sequences were aligned to the NCBI nucleotide sequence database to obtain species taxonomic annotation information. Thirteen environmental physicochemical indicators were measured in the water column. The relationship between fish communities and environmental factors was explored based on redundancy analysis.

Results: A total of 55 fish species were detected, including 27 native and 28 non-native fish species, and Perciformes dominated the fish composition. The fishes with high sequence abundance at each sample site included Acanthogobius hasta, Planiliza haematocheilu, Acanthogobius elongatus, etc. Fish diversity of the tidal creeks with different hydrological connectivity was different. Significantly higher community diversity and richness index, the highest number of species and a more even distribution of the number of individual species were found in the secondary tidal creek than in the other two tidal creeks. SiO32--Si, NO3--N, pH, salinity, NH4+-N, and dissolved oxygen were significantly correlated (P < 0.05) with fish community structure shown by RDA analysis. Acanthogobius hasta with higher sequence abundance was positively correlated with silicate, and the sequence abundance of Planiliza haematocheilus was negatively correlated with salinity.

Conclusion: This study confirmed the feasibility of using environmental DNA metabarcoding to monitor fish diversity of typical tidal water bodies in the Yellow River estuary by comparing it with previous traditional sampling data and indicated that hydrological connectivity of tidal creek systems has a significant impact on fish community structure and diversity. The results of this study are helpful to further understand the influence mechanism of coastal wetland hydrological connectivity on biological communities.

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