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A dataset on inventory and geographical distributions of vascular plants in Shanxi, China
Shuai Li, Weihua Liu, Yudan Xu, Xiaobo Tian, Houjuan Song, Xiaoting Yue, Lingling Wu, Qing Zhang, Tieliang Shanguan
Biodiv Sci    2025, 33 (7): 24317.   DOI: 10.17520/biods.2024317
Accepted: 30 June 2025

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Clarifying the diversity and distribution of wild vascular plants in Shanxi Province is crucial for effective plant diversity conservation efforts in the region. Flora of Shanxi, the most authoritative record of plant cataloging and distribution in Shanxi, has been available for over 20 years. During this period, the plant classification system has evolved significantly, and many new plant records have emerged in Shanxi Province. However, a comprehensive, accurate, and scientific catalog of wild vascular plants remains unavailable. Based on volumes 1-5 of the Flora of Shanxi, this study comprehensively collected relevant literature on vascular plant research in Shanxi since 1980. Using extensive field investigations and related research data collected by the authors in Shanxi Province, the wild plant list was reviewed and refined, including revisions to plant names, protection status, and distribution down to the county level. This dataset presents the latest catalog of wild vascular plants in Shanxi, divided into confirmed and doubtful species lists. As of June 26, 2024, this dataset included 2,438 species, 73 subspecies, 229 varieties, and 4 forms across 147 families and 763 genera. The dataset included lycophytes and ferns (117 species, 4 varieties in 15 families and 34 genera), gymnosperms (13 species, 4 varieties in 4 families and 8 genera), and angiosperms (2,308 species, 73 subspecies, 221 varieties, and 4 forms in 128 families and 721 genera). Additionally, 36 species, 4 varieties in 19 families and 27 genera were listed in List of Key Protected Wild Plants in China (2021), and 119 species, 1 subspecies, and 2 varieties in 47 families and 80 genera were listed in List of Key Protected Wild Plants in Shanxi Province (Jin Zheng Han [2023] No. 126). Further work should prioritize species with limited distribution data and species of concern to further enhance catalog plan in Shanxi Province. This research can provide fundamental data for updating the Flora of Shanxi and advancing plant diversity conservation strategies within Shanxi Province.

Database/Dataset Profile

Title A dataset on inventory and geographical distributions of vascular plants in Shanxi, China
Data author(s) Shuai Li, Weihua Liu, Yudan Xu, Xiaobo Tian, Houjuan Song, Xiaoting Yue, Lingling Wu, Qing Zhang, Tieliang Shanguan
Data corresponding author Tieliang Shanguan (sgtl_55@163.com)
Time range 1980-2024
Geographical scope Shanxi
File size 571 KB
Data volume 3,078 records
Data format *.xlsx
Data link https://doi.org/10.57760/sciencedb.27756
https://www.biodiversity-science.net/fileup/1005-0094/DATA/2024317.zip
Database/Dataset composition The dataset includes 2 data tables (confirmed and questionable species), containing a total of 3,078 records (2,744 confirmed and 334 questionable) across 22 fields. The 22 fields are as follow: sequence number, main categories of vascular plants, family number, Chinese family name, family, genus number, Chinese genus name, genus, species number, Chinese name, scientific name, author, scientific name in data sources, rank, reference for taxonomic treatment, status, data source, distribution, rank in List of Key Protected Wild Plants in China (2021), whether it is affiliated with List of Key Protected Wild Plants in Shanxi Province, specimen voucher museum collection barcode/journal source, specimen collector/collection number.
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Assessment method and the first catalogue of strategic microbial resources
Ke Wang, Peng Zhao, Guomei Fan, Fang Wang, Shiliang Liu, Jing Huang, Lei Cai, Liwei Zhou
Biodiv Sci    2025, 33 (12): 25146.   DOI: 10.17520/biods.2025146
Accepted: 22 July 2025

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Aims: Biological resources are closely related to national economic and social development, and has key strategic value in food security, ecological security and energy security of a country. As a basic component of the ecosystem on earth, microorganisms are of great strategic significance to human’s life and the sustainable development of society. However, due to the lack of a sound system for the preservation, development and protection of strategic resources, many biological resources have been lost overseas through smuggling, entrainment and natural losses.

Method: Referring to other evaluation systems on biological resources, the assessment method to evaluate the strategic value of microbial resources was established in this study.

Results: Rare and endangered species, high economic value species, biosecurity species and strategic frontier species were chosen as the four aspects for strategic microbial resources, and a scoring system using the method of weighted assignment is established according to these aspects. The scoring system contains 7 different primary criteria with different weights, i.e., the weight of 25% for national conservation strategy, the weight of 15% for conservation status, population biology and economic value, and the weight of 10% for biosecurity, other value and strategic frontier. Based on the criteria, the strategic categories of 773 microbial species were assessed according to the criteria, of which 502 species were assessed as strategic microorganisms, including 440 species of fungi, 7 of oomycetes, 1 of microspore, 53 of bacteria and 1 of archaea. Besides, an online assessing platform (https://www. casbrc.org/assessment) was established with the function of scoring system for strategic microorganism and query for assessed species.

Conclusion: The strategic assessment method and the list of strategic microbial resources were firstly established in our country, which will provide important references for the collection, preservation, management and application of strategic microbial resources in China.

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The impact of road noise and light pollution on the behavior of Chiroptera
Meng Zhang, Youbing Zhou, Dahu Zou
Biodiv Sci    2025, 33 (7): 24503.   DOI: 10.17520/biods.2024503
Accepted: 10 April 2025

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Background & Aim: Chiroptera, the only mammalian order capable of true powered flight, has attracted significant attention from researchers due to its unique biological characteristics, such as echolocation, complex niche adaptability, and diverse dietary habits. In recent years, the precipitous decline in bat populations has posed a potential threat to ecosystem stability, making Chiroptera a key focus in conservation biology. As a crucial component of modern socio-economic development, road infrastructure exerts profound impact on plant and animal populations, becoming a major research hotspot in conservation biology. This study focuses on bats, systematically reviewing relevant research and proposing strategies to mitigate the adverse effects of roads on bat populations while improving their habitat quality.

Review Results: This study focuses on Chiroptera, conducting a systematic review of 108 representative studies from both domestic and international sources. Through in-depth analysis, we systematically summarized the effects of road noise and road light pollution on bats during road construction and use. The results indicate that road noise and light pollution universally and diversely affect the acoustic structure and foraging behavior of bats, with species-specific responses. Based on these findings, we propose a series of targeted strategies. First, we recommend establishing and enhancing road assessment and regulatory systems, integrating ecological impact assessments into the entire process of road planning and construction to ensure that economic development aligns with ecological conservation. Second, we suggest increasing noise-blocking facilities, implementing sound barriers and green belt, and other noise-mitigation measures to minimize road noise on bat habitats. Additionally, optimizing road lighting design by using low-intensity, low-frequency flickering lights to reduce light pollution and its disruptive effects on bats.

Perspective: These strategies aim to mitigate the negative impacts of roads on Chiroptera, improve their living conditions, and provide scientific and practical guidance for the conservation of this unique and ecologically important mammalian group.

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China’s large cities in global biodiversity hotspots: Conservation policies and optimization directions
Jing Gan, Xiangxu Liu, Xueming Lu, Xing Yue
Biodiv Sci    2025, 33 (5): 24529.   DOI: 10.17520/biods.2024529
Accepted: 27 March 2025

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Background & Aims Global biodiversity hotspot cities are where urban development and biodiversity conservation come into conflict, playing a critical role in maintaining biodiversity both within and beyond their regions. However, there has been no dedicated study focusing on Chinese cities within global biodiversity hotspots. Based on Target 12 of the Kunming-Montreal Global Biodiversity Framework and Priority Action 18 of the China National Biodiversity Conservation Strategy and Action Plan (2023-2030), this research examines the biodiversity conservation policies of 16 Chinese cities with populations exceeding one million within global biodiversity hotspots from five key aspects: (1) biodiversity conservation planning and sustainable utilization plans, (2) urban biodiversity survey, monitoring, and assessment, (3) habitat restoration and ecological corridor construction, (4) the connection between urban residents and nature as well as their health and well-being, and (5) urban ecosystem functions and services. By comparing these conservation policies with international case cities, the study identifies existing challenges and proposes optimization directions to support biodiversity-friendly urban development while balancing ecological protection and high-quality urban growth.

Review ResultsThe findings show that both Chinese and international hotspot cities face common challenges, including a lack of awareness of their unique ecological location, insufficient long-term biodiversity-inclusive urban planning, and a general scarcity of biodiversity monitoring data. Additionally, Chinese cities exhibit specific issues such as limited coverage and single-method approaches in urban biodiversity monitoring, insufficient attention to biodiversity-related public experiences and supporting facilities, and inadequate focus on the provision of urban ecosystem services.

Optimization Trends Future enhancements to urban biodiversity conservation policies in these hotspot cities should prioritize the followings: (1) prioritizing the development of spatial planning for biodiversity conservation; (2) exploring the integrated application of multi-source data monitoring technologies; (3) standardizing multi-dimensional approaches to urban biodiversity experiences; (4) promoting synergistic enhancement of urban biodiversity conservation and ecosystem services.

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List and distribution of lycophytes and ferns in Hubei Province
Qiang Fu, Yuting Wang, Yufei Rao, Ligai Huang, Jingjing Wang, Miao Miao, Hongjie Meng
Biodiv Sci    2025, 33 (6): 24449.   DOI: 10.17520/biods.2024449
Accepted: 27 February 2025

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Aim:Hubei Province, located in central China, features a complex and diverse topography that provides heterogeneous habitats for rich flora. Lycophytes and ferns are important elements in biodiversity. However, they were not included in the Flora of Hubei.

Methods: To comprehensively document the diversity and distribution of lycophytes and ferns in Hubei Province, we compiled a checklist integrating data from the Catalogue of Life China: 2024 Annual Checklist, the National Specimen Information Infrastructure (NSII), published books, and journal articles. Families and genera were classified based on the Pteridophyte Phylogeny Group I (PPG I) system.

Results: Our results identified 31 families, 99 genera, 570 species, 3 subspecies, and 27 varieties of lycophytes and ferns in Hubei Province. Among these, lycophytes comprised 2 families, 8 genera, 38 species, and 1 subspecies, while ferns comprised 29 families, 91 genera, 532 species, 2 subspecies, and 27 varieties. In addition, this study confirmed that 42 species previously recorded in Hubei Province were not actually distributed there, and we questioned the authenticity of 37 species reported in the province.

Conclusion: To improve the accuracy of plant documentation in Hubei Province, we recommend strengthening field investigations, and ensuring rigor and precision in specimen collection records. Our results provide a valuable dataset for future study on lycophytes and ferns in Hubei Province.

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Research progress and prospect of urban green space biodiversity
Xiaoyu Zhu, Chenhao Wang, Zhongjun Wang, Yujun Zhang
Biodiv Sci    2025, 33 (5): 25027.   DOI: 10.17520/biods.2025027
Accepted: 13 May 2025

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Background & Aim As a critical research area under the framework of the Convention on Biological Diversity (CBD), urban green spaces play a key role in maintaining the ecological stability of cities and improving the quality of life of residents. However, the compound pressures of habitat fragmentation, invasive alien species and environmental pollution brought about by large-scale global urban expansion have made the conservation of biodiversity in urban green spaces an urgent issue in global ecological governance. This paper focuses on the biodiversity of urban green spaces under high-intensity human intervention, systematically analyzing its conceptual connotation and research scope. We review advances in monitoring technologies, functional synergies, landscape optimization, and management strategies, while identifying research gaps and future directions.

Progress: Research indicates that urban green spaces serve as vital infrastructure for enhancing the resilience of ecosystem services, facilitating species migration and dispersal, and improving climate adaptation. Effective biodiversity conservation requires integrated strategies that restore ecological connectivity and optimize multifunctional synergies. However, the current research still faces bottlenecks such as fragmentation of the monitoring technology system, disconnection of cross-scale planning, and lagging governance mechanisms. In the future, it is necessary to build an intelligent monitoring system and a comprehensive database, develop multi-objective synergistic models, promote biodiversity-oriented green space system planning, and innovate a multifaceted governance mechanism.

ProspectsThrough interdisciplinary integration and international cooperation, the conservation of urban green space biodiversity will be deeply embedded in the governance of land space, and the synergistic path of urbanization and biodiversity conservation will be explored, so as to provide a scalable ecological restoration plan for achieving the global 30 by 30 target and provide a scientific decision-making paradigm for the sustainable symbiosis of urban ecosystems in the context of the Anthropocene.

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Perspectives of urban biodiversity studies in China serving Target 12 of the Kunming-Montreal Global Biodiversity Framework
Jun Yang, Xudong Yang, Xinyi Liu, Jing Zhou
Biodiv Sci    2025, 33 (5): 25104.   DOI: 10.17520/biods.2025104
Accepted: 16 June 2025

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Background & Aims: Urban biodiversity serves as the foundation of functional urban ecosystems and contributes to the health and well-being of urban residents. Due to these critical functions, Target 12 of the Kunming-Montreal Global Biodiversity Framework (KMGBF) aims to conserve and sustainably use urban biodiversity. In this study, we sought to determine how urban biodiversity studies can support the achievement Target 12 in China.

Methods: We initially employed the logic model to examine Target 12 in the KMGBF and Priority Action 18 outlined in the China National Biodiversity Conservation Strategy and Action Plan (2023-2030). The narratives of the target and action were categorized into aims, interventions, immediate outcomes, and final outcomes. We formulated ten research questions concerning urban biodiversity studies in China based on the interventions and outcomes. Subsequently, we developed search strings for the ten questions and searched the China National Knowledge Infrastructure (CNKI). We reviewed the documents that met our search criteria to identify gaps and future research needs.

Results: Our review indicates that there is a significant imbalance in the number of studies addressing the ten research questions, with limited research on urban biodiversity conservation legislation and routine monitoring. In contrast, more studies have focused on urban ecosystem service functions and health benefits. Future research efforts, guided by practical needs, should prioritize investigations into key concepts, methods for conducting urban biodiversity surveys and assessments, approaches to constructing urban biodiversity monitoring networks, and evaluations of the effectiveness of existing policies and management actions.

Suggestion & Perspectives: The KMGBF creates new opportunities for urban biodiversity research in China; however, collaboration between government officials and researchers is essential to realize these opportunities.

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A dataset on inventory and geographical distribution of halophytes of China
Qinwen Lin, Na Zhang, Qiang Wang
Biodiv Sci    2025, 33 (7): 25030.   DOI: 10.17520/biods.2025030
Accepted: 30 June 2025

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Halophytes, as a unique group of plants adapted to saline-alkaline environments, play a crucial role in ecological conservation, saline-alkaline land management, and sustainable resource utilization. However, compared to their significance, the systematic inventory of halophytes in China has lagged behind. Existing data primarily come from regional studies or scattered literature records, lacking systematicity and comprehensiveness. This study, based on the foundational data from Halophytes of China (first and second editions) and the global halophyte database (eHaloph), integrates years of field investigations and systematically reviews and supplements the existing inventory data (adding new taxa and new records), improving global distribution information. It also systematically organizes ecological and functional data such as habitat, life form, height, morphology, halophyte type, ecological type, maximum salinity, photosynthetic pathway, and utilization value. Ultimately, we have compiled a dataset on the new inventory and geographical distributions of Chinese halophytes. Up to 2024, this dataset includes 102 families, 538 genera, 1,581 species (including 31 subspecies and 37 varieties) from China. With the advancement of agricultural development and ecological restoration efforts, some exotic halophytes have gradually become naturalized and integrated into China’s halophyte communities. Compared to the of Halophytes of China, 2nd edn, this dataset includes an additional 31 families, 310 genera, 1,026 species (including 22 subspecies and 14 varieties). The establishment of this dataset provides important support for in-depth research on the diversity, ecological functions, and application potential of Chinese halophytes, and also provides a scientific basis for policy-making in saline-alkaline land management and biodiversity conservation.

Database/Dataset Profile

Title A dataset on inventory and geographical distribution of halophytes of China
Authors Qinwen Lin, Na Zhang, Qiang Wang
Corresponding author Qiang Wang (wangqiang@ibcas.ac.cn)
Time range 2020-2024
Geographical scope China
File size 417 KB
Data format *.xlsx
Data link https://10.57760/sciencedb.j00152.00028
https://www.biodiversity-science.net/fileup/1005-0094/DATA/2025030.zip
Database/Dataset composition The dataset consists of 1,581 items (rows). Each item includes 22 fields (columns): sequence number, main categories of halophytes, Chinese family, family, Chinese genus, genus, Chinese name, Chinese alias, scientific name, author, distribution, habitat, life form, height, morphology, halophytes type, ecological type, maximum salinity, source of maximum salinity, photosynthesis pathway, utilization value, data source.
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Design pattern and network development of urban microhabitat based on nature-based solutions (NbS): A case study of habitat gardens in Changning District, Shanghai
Yan Kang, Jing Gan, Linlin Yu, Chenjing He, Liqing Zhang, Jingbin Wu
Biodiv Sci    2025, 33 (5): 24528.   DOI: 10.17520/biods.2024528
Accepted: 24 March 2025

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Background & AimsNature-based solutions (NbS) offer multiple environmental, social and economic benefits. They play an important role in addressing climate change and achieving sustainable development. Enhancing urban ecosystems through strategies that “work with nature” is now widely practiced by cities globally and is crucial for achieving Target 12 of the Kunming-Montreal Global Biodiversity Framework.

Methods: In this paper, we summarized the theoretical framework of NbS and used the habitat garden initiative in Changning District, Shanghai as a case study. We systematically analyzed the design and operational modes, and network construction methods of urban microhabitats. Furthermore, we explored the achievements and limitations of habitat gardens, and suggested future research and practical directions for urban microhabitats in high-density urban areas, guided by national urban biodiversity conservation strategies.

Results: The habitat garden initiative in Changning District, Shanghai has explored three key innovations: (1) Strengthening the networking scale effect among scattered microhabitats in dense urban areas; (2) Establishing a model of community governance with active resident participation; and (3) Forming collaborative partnerships that benefits all stakeholders. However, challenges remain, such as inconsistent biodiversity monitoring, an overemphasis on residential green spaces, and inadequate funding plans. As the Kunming-Montreal Global Biodiversity Framework progresses, restoring urban habitats and ecological networks will become increasingly crucial.

Suggestion & PerspectivesGuided by the NbS framework and principles, cities should establish a cross-departmental and inclusive governance platforms to provide support urban microhabitats and ecological networks. To increase the appeal of NbS and urban biodiversity conservation, three measures should be implemented: improving scientific monitoring systems, expanding design patterns across various climate zones, and developing diverse funding mechanisms.

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Population dynamics and conservation strategies of Andrias davidianus in Hunan Zhangjiajie Giant Salamander National Nature Reserve, China
Shurong Tian, Ying Wei, Fen Xiao, Yunyun Zhou, Yixing Xie, Cheng Wang, Fen Song, Zhiqiang Liang, Xiaojie Gui
Biodiv Sci    2025, 33 (7): 24581.   DOI: 10.17520/biods.2024581
Accepted: 01 July 2025

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Aims: Population dynamics analysis is a crucial basis for formulating conservation strategies of endangered species. The Chinese giant salamander (Andrias davidianus) is an endemic amphibian in China, and the status of its wild populations remains unclear. Through population dynamics analysis, this study aims to provide a basis for the conservation strategies of the Chinese giant salamander.

Methods: This study took the Chinese giant salamander (Andrias davidianus) as the focal taxon in Zhangjiajie Chinese Giant Salamader National Nature Reserve, Hunan Province, China, based on the field survey data obtained from 2006 to 2021 and was complemented by comprehensive stock enhancement and release statistics spanning from 2000 to 2024. Utilizing population growth models, the study examined the population dynamics, carrying capacity, and the efficacy of stock enhancement measures for the Chinese giant salamander population.

Results: The results showed that: (1) The average annual population growth rate was 0.1722 ± 0.0324, with a carrying capacity (K) value of 51,190 individuals. The current population was in an exponential growth phase. (2) There was a highly significant difference in population growth curves between stock enhancement and non-stock enhancement scenarios. In the non-stock enhancement scenario, the instantaneous growth rates in the exponential and Logistic growth functions decreased by 16.27% and 32.11%, respectively. (3) Stock enhancement has demonstrably reinvigorated wild populations of Chinese giant salamander, under the current release regime, population size is projected to reach the environmental carrying capacity in 40 years.

Conclusion: Empirical validation confirms the feasibility of leveraging population growth models to project demographic trajectories, rendering them powerful tools for devising medium to long-term conservation strategies for endangered species; Stock enhancement has a significant effect on the recovery of the wild population of the Chinese giant salamander. Based on the current stock enhancement volume, the population size is projected to reach the peak of the carrying capacity in 40 years. Considering the current population growth rate, population growth trajectory, and environmental carrying capacity, continuous stock enhancement measures should be implemented, and individuals for stock enhancement should be selected based on river systems and genetic lineages, with offspring from local broodstock as the source of stock enhancement individuals. This approach can prevent genetic mixing in wild populations and ensure stable population growth. Additionally, protection and restoration efforts should be focused on breeding sites. This study offers valuable guidance for the analysis of population dynamics, the assessment of conservation effectiveness, and the development of conservation strategies for the Chinese giant salamander and other endangered species.

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Geogenomics: Research methods and advances
Ling Hu, Zehao Shen
Biodiv Sci    2025, 33 (7): 25010.   DOI: 10.17520/biods.2025010
Accepted: 13 May 2025

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Background & Aims: With the integrated development of earth sciences and life sciences, geogenomics—an interdisciplinary field integrating geology, geomorphology, paleoclimatology, genomics, phylogenetics, population genetics, and biogeography—links surface landscape changes to biological evolution. This field has become an effective way for testing geological hypotheses and reconstructing Earth’s history, as well as exploring its co-evolution with life. Geogenomics also shows significant potential in global ecological conservation.

Methods: In this review, we utilized the Web of Science core collection, and analyze the evolution of themes and hotspots in geogenomics through bibliometric analysis. Meanwhile, we systematically introduce the fundamental concepts and key scientific questions of geogenomics, as well as its relationship to related research fields.

Review Results: As an emerging interdisciplinary field, geogenomics deeply integrates geological, climatic, and genomic data to inverts the spatio-temporal patterns and interactions between geological structure movements and the history and distribution changes of biological groups. This field holds significant promise for advancing geological and biological evolution. We focus on five key aspects: testing geological hypotheses; elucidating regional or intercontinental scale geological processes; inferring regional biodiversity evolution history; addressing uncertainties in geological reconstruction and scale effects, as well as the geographical distribution patterns and dispersal origins of pathogens.

Perspectives: At present, research in this field is still limited in China, but it has been carried out on several important scientific questions, such as the uplift history was highly variable of the Qinghai-Tibetan Plateau and the evolution of the Yangtze River and Yellow River systems. In the future, it is imperative to enhance the application of multidisciplinary approaches, develop more effective tools, and advocate for the establishment of a global geogenomics research database.

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Coexistence mechanism of tropical forest tree species based on metabolomics and transcriptomics technologies: Taking Ficus species as an example
Deju Yu, Yunyun He, Min Cao, Gang Wang, Jie Yang
Biodiv Sci    2025, 33 (7): 24475.   DOI: 10.17520/biods.2024475
Accepted: 30 June 2025

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Aim: Tropical tree communities are characterized for their species diversity, with large genera playing a key role in promoting community diversity. However, the mechanisms underlying the coexistence of closely related species within these genera remain a central question in tropical ecology. Traditional approaches, often based on functional traits, have provided insights into niche differentiation but fall short of fully explaining the complex coexistence patterns.

Methods: This study focused on representative Ficusspecies in tropical community. By combining transcriptomics and metabolomics with phylogenetic analysis and functional traits measurements, it explored how differences in phylogenetic relationships, physical defense traits, defense-related genes, and metabolite diversity influence interspecific interactions among Ficus species, thereby promoting and maintaining their coexistence in local communities.

Results: In locally coexisting Ficus species, (1) No significant phylogenetic signals were detected in defensive traits except for C/N ratio; (2) Physical defense traits, defense-related genes, and metabolite diversity exhibited significantly lower values than random structure (P< 0.01), indicating divergent patterns, whereas phylogenetic relationships did not significantly differ from random structure (P= 0.194); (3) The diversity pattern of defensive traits reflected habitat heterogeneity.

Conclusion: This study shows that locally coexisting Ficus species promote defensive niche differentiation through the divergent pattern of defensive traits. The diversity of defense-related genes and metabolites provided new evidence for this, which is expected to provide new insights and ideas in this field.

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Leaving space for wildness in metropolitan region: Trends and prospects
Lin Yuan, Siqi Wang, Jingxuan Hou
Biodiv Sci    2025, 33 (5): 24481.   DOI: 10.17520/biods.2024481
Accepted: 13 May 2025

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Aims: Leaving space for wildness as a critical initiative for maintaining biodiversity within national territorial space, holds significant importance in supporting the construction of ecologically sustainable and high-quality metropolitan regions. However, current metropolitan planning systems have not sufficiently addressed this issue, and it is particularly crucial to emphasize this aspect in the advancement of the ecological civilization system.

Methods: This study adopts a historical perspective to examine the development of various types of natural ecological spaces in Chinese metropolitan areas over the past 30 years, focusing on both the overall metropolitan region and the urban core. It analyzes the increasingly prominent coexistence pattern between protected areas and built-up areas across metropolitan regions, as well as the evolution in core urban areas from emphasizing the coordinated expansion of green spaces and built-up areas to the focused development of large suburban parks that incorporate ecological conservation zones.

Results: These findings collectively reveal the gradually strengthening trend of natural wilderness preservation in contemporary metropolitan areas. Furthermore, the study explores and envisions metropolitan planning under the framework of the ecological civilization system, addressing aspects such as conceptual adjustments, system development, and mechanism optimization.

Conclusion: It advocates for the exploration of systematic space for wildness within metropolitan planning frameworks, promoting the development of relevant governance tools to support the future emergence of a new metropolitan form characterized by “urban-wilderness coexistence”.

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Prediction of suitable habitats and risk assessment for key invasive alien plant species on Hainan Island based on the MaxEnt model
Shengnan Ji, Jiarong Han, Yueheng Ren, Xiaodong Mu, Yanpeng Zhu
Biodiv Sci    2025, 33 (8): 25037.   DOI: 10.17520/biods.2025037
Accepted: 30 June 2025

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Aims: Invasive alien plants (IAPs) pose serious threats to ecosystems, biodiversity, and human well-being. Hainan Island, as one of China’s most biodiverse regions, confronts mounting risks of invasion by alien plant species. This study targeted 33 invasive species identified in the newly released Key Management List of Invasive Alien Species (issued jointly by six ministries and commissions, including the Ministry of Agriculture and Rural Affairs), aiming to evaluate their potential suitable habitats and invasion risks on Hainan Island.

Method: We first aggregated occurrence records and environmental variables from multiple databases for the 33 listed invasive plant species. Using the maximum entropy (MaxEnt) model in conjunction with geographic information system (GIS) techniques, we modeled each species’ potential spatial distribution under current climatic conditions. Subsequently, we overlaid species-specific distribution maps to identify invasion hot spots and assessed the relative importance of environmental factors contributing to habitat suitability.

Results: Among the 33 investigated species, 25 were predicted to possess suitable habitats on Hainan Island, which varied in geographical extent. Notably, four species—Sorghum halepense, Chromolaena odorata, Amaranthus spinosus, and Lantana camara—exhibited high-risk distributions covering more than 50% of the island’s total land area. Invasion hot spots were concentrated primarily in low-elevation plains in the northeastern region and several coastal zones. Key environmental drivers included human activity intensity, temperature seasonality, mean diurnal temperature range, and precipitation of warmest quarter. These findings reflected the urgent need for comprehensive prevention and control measures, particularly in vulnerable areas.

Conclusion: Our results underscore the importance of prioritizing high-risk species and high-risk regions for targeted monitoring and integrated management on Hainan Island. Effective strategies should include not only conventional control approaches but also incorporate socio-environmental factors and biotic interaction mechanisms in subsequent research. By enhancing early warning systems and applying science-based interventions, stakeholders can better curb the spread of invasive alien plants and safeguard the island’s rich biodiversity.

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The significance of traditional culture for biodiversity conservation
Chunlin Long
Biodiv Sci    2025, 33 (6): 25230.   DOI: 10.17520/biods.2025230
Accepted: 25 June 2025

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Characteristics of bird diversity and environmental relationships in Tsinghua University campus
Tz-Hsuan Tseng, Rui Yang, Yue Huang, Luyao Chen
Biodiv Sci    2025, 33 (5): 24373.   DOI: 10.17520/biods.2024373
Accepted: 31 March 2025

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Aims: Urban green spaces are crucial for biodiversity conservation, and university campuses, as microcosms of urban built environments, are crucial for enhancing the quality of micro urban green spaces and conserving biodiversity. However, existing studies on campus biodiversity often lack continuous spatial and temporal information, and fail to clarify the relationships between species and the internal structure of green spaces. This gap may hinder the optimization of small green spaces, ultimately limiting the achievement of targets set forth in the Kunming-Montreal Global Biodiversity Framework (KMGBF) and the China National Biodiversity Conservation Strategy and Action Plan (2023-2030).

Methods: This study focused on the bird species of Tsinghua University campus, employing generalized linear models and redundancy analysis to investigate the spatiotemporal patterns of bird distribution and analyze the associations between bird community composition and green space characteristics.

Results: The study revealed that birds in university campus green spaces exhibited concentrated distributions with seasonal variations. Bird community composition was associated with the woody food plants richness, shrub evenness, grass coverage, artificial grass coverage, and tree coverage. Among these factors, woody food plants richness promoted bird abundance, species richness, and diversity, while shrub evenness promoted bird richness and diversity. Tree and artificial grass coverage promoted bird abundance only when both are simultaneously below 37.5% and 39.8%, respectively. Grass coverage negatively impacted bird richness and diversity. Furthermore, different bird residency types displayed distinct habitat preferences: Migratory birds in autumn were solely associated with vegetation structure, whereas resident and winter visitors were jointly influenced by both the physical characteristics and vegetation structure of green spaces.

Conclusion: This study suggests that, when designing micro urban green spaces in alignment with natural principles, tree and artificial grass coverage should be kept below 40% simultaneously, while enhancing the woody food plants richness and shrub evenness. Additionally, increasing natural grass coverage and vertical vegetation is recommended. This study provides both quantitative and qualitative recommendations for creating near-natural micro urban green spaces, providing a scientific foundation for achieving the goals of KMGBF and the China National Biodiversity Conservation Strategy and Action Plan (2023-2030) in improving urban blue and green spaces quality.

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Thoughts on the application of species distribution models in macroecology and biogeography
Huijie Qiao
Biodiv Sci    2026, 34 (1): 25238.   DOI: 10.17520/biods.2025238
Accepted: 16 September 2025

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Background & Aims: Species distribution models (SDMs), often synonymous with ecological niche models (ENMs), have solidified their position as indispensable tools in modern macroecology, biogeography, species invasion and conservation. Their utility in predicting a species’ potential geographic range, evaluating the impacts of climate change, and guiding targeted conservation efforts has led to a remarkable surge in their popularity and application over the last three decades. However, this rapid expansion has also exposed a significant and persistent conceptual gap: a growing disconnect between the practical application of modeling techniques and the foundational ecological theory that should guide them. A primary source of this issue is the widespread confusion surrounding the concept of the “ecological niche”. This ambiguity has led to conceptual errors, inappropriate method use, and potentially flawed ecological inferences. This paper addresses this critical gap by systematically reviewing the core niche concepts, linking them to specific modeling paradigms, diagnosing prevalent issues in current research, and offering recommendations to promote a more theoretically grounded and robust application of SDMs.

Review Results: The term “ecological niche” is not a single, unified concept. It encompasses three distinct yet complementary ideas. The Grinnellian niche defines a species’ existence based on the abiotic environmental conditions and habitat requirements that allow it to persist. As a “scenopoetic” or habitat-based framework, it is most closely aligned with standard SDMs, which statistically correlate species occurrence records with broad-scale climatic and environmental variables. The Eltonian niche, conversely, focuses on a species’ functional role within a community, emphasizing biotic interactions such as resource consumption, predation, and competition. This concept is central to community ecology and is better represented by methods like joint species distribution models (JSDMs) that account for residual correlations between species, or through explicit network analysis. The Hutchinsonian niche provides the most formal definition, conceptualizing the niche as an “n-dimensional hypervolume” encompassing all environmental and resource variables. Different modeling approaches correspond to these niche concepts. Standard correlative SDMs (e.g., MaxEnt, random forest) are primarily used to model the Grinnellian niche, generating a map of environmental suitability based on abiotic variables. To explore the Eltonian niche, JSDMs simultaneously model multiple species to infer interspecific interactions. The Hutchinsonian framework, particularly the concept of the hypervolume, is directly operationalized by analytical methods that quantify niche breadth, overlap, and centrality in multidimensional space. Mechanistic models, which use principles of physiology to predict survival and reproduction, offer a valuable complementary approach to approximate the fundamental niche. Despite these advances, the application of SDMs is fraught with common pitfalls. The most critical error is the fundamental vs. realized niche fallacy, where researchers mistakenly interpret the output of a standard SDM, which is trained on a species’ actual distribution, as a representation of its full fundamental niche. In reality, these models typically capture only a portion of the realized niche, constrained by unmeasured biotic factors and dispersal limitations. Additionally, many studies violate the core assumptions of SDMs, such as the assumption that species are in equilibrium with their environment or that sampling is unbiased. Ignoring biotic interactions and failing to account for non-equilibrium dynamics (e.g., recent invasions) further limits the accuracy and reliability of these models.

Conclusions: To advance SDM, this paper advocates for a multi-pronged approach grounded in ecological theory. First, researchers must strive for greater conceptual clarity, explicitly stating which niche concept their study addresses and interpreting results within that defined framework. Second, there is a clear need for enhanced methodological rigor and integration, encouraging the development of hybrid models that combine the strengths of different modeling paradigms, such as incorporating biotic interactions or dispersal dynamics into standard SDMs. Furthermore, adherence to best practices in data collection, model selection, and rigorous validation is paramount. The future of the field lies in transcending simple correlative methods and embracing a more integrative science that synthesizes Grinnellian, Eltonian, and Hutchinsonian perspectives. By leveraging new data streams and grounding our work in a deep understanding of ecological theory, we can ask more complex questions and provide more robust guidance for biodiversity management in an era of rapid environmental change.

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China’s urban biodiversity studies under the Target 12 of Kunming-Montreal Global Biodiversity Framework
Jun Yang, Junxiang Li, Fanhua Kong
Biodiv Sci    2025, 33 (5): 25196.   DOI: 10.17520/biods.2025196
Accepted: 23 June 2025

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Alpha-diversity index selection: Simulation comparison under unequal sampling
Yi Zou
Biodiv Sci    2026, 34 (1): 25278.   DOI: 10.17520/biods.2025278
Accepted: 28 September 2025

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Aims: Unequal sampling is a common issue in field-based community ecology. Choosing α-diversity metrics that remain robust when sample sizes vary among plots is critical for reliable biodiversity assessment. This study evaluated the performance of nine diversity indices, including five “observed” indices calculated directly from the data: (1) species richness, (2) Shannon index, (3) Simpson index, (4) Hurlbert’s rarefied richness, and (5) Fisher’s α; and four “richness-estimator” indices: (1) Chao1 index, (2) abundance-based coverage estimator (ACE), (3) the extrapolated value of iNEXT (interpolation/extrapolation), and (4) total expected species (TES).

Methods: Using simulation, the performance of each index was evaluated under a gradient of minimum-sample thresholds, and for each case the accuracy and precision of between-sites variance (linear regression R2) was recorded. The simulation built up 20 sites in which “true” species richness (S) was linearly correlated with an environmental gradient (x) with a theoretical coefficient of determination R2 = 0.80. Four unequal-sampling scenarios were then generated by imposing different minimum sample sizes per site. For each scenario, linear models were fitted between every diversity index and x, recording the corresponding R2.

Results: The results indicate that sample size (the number of individuals recorded at a sampling site, as well as the equivalent sampling completeness) is the primary factor determining index performance. As sample size increased, model R2 of all diversity metrics significantly improved. Under extremely low sampling (minimum < 20 individuals; sampling coverage < 20 %), rarefied richness had a higher R2 than other indices. When the minimum sample size reached 100 individuals, the estimator indices group outperformed the observed indices. This study further clarified the minimum sample size and the corresponding sampling completeness required for each index to recover the predetermined R2.

Conclusion: Overall, rarefied richness is recommended for highly unequal, sample size-poor scenarios. In practice, rarefaction threshold should be set at a relatively high level (e.g., > 40 individuals) to enhance the overall comparability among sampling sites, even if it results in the exclusion of extremely under sampled sites. Once sampling completeness is adequate, richness estimators are preferable, as they can generate extrapolated richness that are close to the true gradient.

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Theoretical foundations, methodological advances, and applications of joint species distribution models with a focus on the HMSC framework in ecology
Jiqi Gu, Jiangshan Lai, Ying Wang, Haoran Wu, Xue Zhang, Xiaotong Song, Xiaoming Shao, Anru Lou
Biodiv Sci    2026, 34 (1): 25364.   DOI: 10.17520/biods.2025364
Accepted: 26 January 2026

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Background: Understanding how environmental filtering, biotic interactions, and neutral processes jointly shape species distributions and community structure is a central question in modern community ecology. However, traditional diversity indices, ordination analyses, and single-species distribution models (SDMs) cannot simultaneously integrate species associations, environmental gradients, functional traits, and phylogenetic relationships, thereby limiting their ability to disentangle community assembly mechanisms.

Framework: Joint species distribution models (JSDMs), particularly the hierarchical modelling of species communities (HMSC) framework, offer a unified and flexible Bayesian tool for community-level mechanistic inference. This study provides a systematic review of the statistical structure, mathematical foundations, and inferential mechanisms of HMSC, and establishes a complete analytical workflow encompassing data organization, model specification, Markov Chain Monte Carlo (MCMC) estimation, model evaluation, ecological interpretation, and predictive applications. A step-by-step tutorial, Joint Species Distribution Modelling with HMSC, accompanies the review and illustrates the practical implementation of HMSC through bryophyte community data and fully reproducible R code.

Theory: In the theoretical component, we clarify how HMSC integrates environmental gradients, species traits, phylogenetic relationships, and spatial structure within a unified hierarchical Bayesian framework to distinguish statistical signals of environmental filtering, biotic filtering, and dispersal limitation. Methodologically, we dissect the mathematical structure of latent variable models, elucidate the boundaries of ecological interpretation for residual correlations, and provide a conceptual basis for differentiating species co-occurrence signals from environmental effects and unobserved factors. We further compare HMSC with other mainstream JSDMs implementations and traditional community analytical methods, highlighting their relative advantages and ecological applicability.

Applications: On the applied side, we synthesize the rapidly expanding use of JSDMs across forest, wetland, grassland, marine, urban, and microbial ecosystems, demonstrating their value in conservation planning, invasive species risk assessment, co-occurrence network analysis, and scenario-based forecasting. With the advancement of GPU-accelerated computation, migration learning, and high-dimensional modelling frameworks, HMSC greatly improves ecological niche estimation and distribution prediction for rare species and enables community modelling for tens of thousands of taxa. Overall, JSDMs and HMSC in particular represent a methodological shift from single-species prediction toward integrative, multi-species and multi-dimensional ecological modelling. They provide an efficient, scalable, and uncertainty-aware platform that strengthens ecological theory testing, enhances understanding of community assembly mechanisms, and supports biodiversity conservation and management decisions.

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Methods of data analysis: Unpacking the “black box” in ecology
Shuang Zhang, Yi Zou, Huijie Qiao, Jian Zhang
Biodiv Sci    2026, 34 (1): 26030.   DOI: 10.17520/biods.2026030
Accepted: 09 February 2026

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Research progress on acoustic monitoring of cetaceans
Fengxiang Zhou, Xixia Lu, Liming Yong, Qianhui Zeng, Liangliang Yang, Ping Li, Yuke Zhang, Xianyan Wang
Biodiv Sci    2025, 33 (7): 24556.   DOI: 10.17520/biods.2024556
Accepted: 01 July 2025

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Background & Aim: Cetaceans are key indicator species of marine ecosystems, and effective monitoring of their population dynamics is essential for biodiversity conservation. Traditional ship-based visual survey methods are constrained by multiple factors such as sea conditions, weather visibility and labor costs, making it difficult to achieve spatial and temporal continuity of ecological monitoring. Passive acoustic monitoring (PAM) breaks through the traditional monitoring bottleneck by deploying hydrophones to receive cetacean acoustic signals and environmental noise in real-time, achieving all-weather, non-invasive and three-dimensional monitoring of cetaceans. We conducted a systematic review of cetacean acoustic monitoring literature published between 2004 and June 2024, categorizing findings into five thematic areas. Our analysis identified recent research achievements and persistent challenges, and proposes strategic recommendations for advancing acoustic monitoring applications in China.

Review Results: Our meta-analysis identified 1,089 relevant papers, revealing limited publication output between 2004 and 2010 followed by exponential growth post-2016. The analyzed literature coalesces into five research domains: (1) equipment development and technical methods (19.9%), (2) acoustic signals and communication patterns (18.7%), (3) population and spatial ecology (38.0%), (4) ecological behavioral patterns of cetaceans (15.1%), and (5) conservation and management applications (8.3%). Technological convergence such as deep learning has revolutionized high-throughput acoustic data processing. Contemporary research extends beyond acoustic signal types to population dynamics, soundscape ecology and behavioral patterns, establishing acoustic monitoring as a critical tool in cetacean conservation and management.

Perspectives: This review synthesizes contemporary advancements in cetacean bioacoustics and outlines strategic pathways for China’s nascent research initiatives. We propose five evidence-driven priorities to advance both scientific understanding and conservation applications: (1) advance technological innovation by developing next-generation autonomous recording systems and intelligent analytical tools tailored to cetacean vocalizations; (2) implement holistic monitoring systems that synergize multi-dimensional acoustic data with environmental and behavioral datasets through sensor network integration; (3) establish unified national archives featuring standardized protocols for data sharing and collaboration, incorporating blockchain technology for traceability; (4) strengthen interdisciplinary capacity through specialized training programs integrating marine acoustics, ecology, and computational modeling; (5) expand participatory science frameworks via targeted science communication campaigns and citizen science platforms for coastal communities. These strategic priorities aim to bridge existing research gaps and advance evidence-based cetacean conservation.

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Genetic diversity: An important foundation for maintaining biodiversity and a core task of biodiversity conservation
Yigang Song, Honghu Meng, Xiaolei Huang, Aiying Wang
Biodiv Sci    2025, 33 (8): 25383.   DOI: 10.17520/biods.2025383
Accepted: 30 September 2025

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Bird and mammal diversity monitoring dataset in Gaowangjie National Nature Reserve (2021-2023)
Jing Mao, Jing Wang, Jie Huang, Shuhong Xiong, Ziliang Zhang, Youxiang Zhang, Tao Wu
Biodiv Sci    2025, 33 (6): 24489.   DOI: 10.17520/biods.2024489
Accepted: 18 June 2025

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Wildlife diversity monitoring is an important tool for assessing conservation progress in nature reserves. Gaowangjie National Nature Reserve is located in Guzhang County, Hunan Province, in the heart of the Wuling Mountain Range. This reserve covers an area of 17,169.8 ha, and it is habitat to 12 species of wildlife under national protection, such as small Indian civet (Viverricula indica), leopard (Prionailurus bengalensis), Elliot’s pheasant (Syrmaticus ellioti) and Koklass pheasant (Pucrasia macrolopha). Camera-trapping technology is a practice often used in wildlife monitoring, providing effective support for species cataloging in nature reserves. Infrared camera monitoring records from 2021 to 2023 in the Gaowangjie National Nature Reserve were collected and species identification was performed. The dataset included 42,947 camera working days and captured a total of 45,838 images. Among them, there were 19,972 mammal records and 8,039 independent detections, covering 12 species of mammals in 3 orders and 8 families. There were 5,694 bird records and 2,212 independent detections, involving 43 species of birds in 9 orders and 23 families. By showing detailed coordinates of the camera sites, the working days of the cameras, the independent detections of birds and mammals, and the list of bird and mammal species monitored, these data can aid in revealing the biodiversity of a protected area. This insight provides an important foundation for developing evidence-based conservation plans and management strategies in protected areas.

Database/Dataset Profile

Title Bird and mammal diversity monitoring dataset in Gaowangjie National Nature Reserve (2021-2023)
Data author(s) Jing Mao, Jing Wang, Jie Huang, Shuhong Xiong, Ziliang Zhang, Youxiang Zhang, Tao Wu
Data corresponding author Tao Wu (623725242@qq.com)
Time range 2021-2023
Geographical scope 110°00'-110°14' E, 28°38'-28°45' N ; Elevation: 226-1,073 m
File size Data file: 137 KB; Representative species photos and videos: 142 MB
Data format *.xlsx, *.docx, *.zip
Data link
https://doi.org/10.57760/sciencedb.j00152.00027
https://www.biodiversity-science.net/fileup/1005-0094/DATA/2024489.zip
Database/Dataset composition

The dataset consists of 4 data files and 1 zipped file of representative species photos and videos. The data file contains: (1) Infrared camera data from 2021; (2) Infrared camera data from 2022; (3) Infrared camera data from 2023; (4) List of bird and mammal species.
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The effect of climatic factors and anthropogenic activities on different genetic diversity indicators of amphibians and mammals
Ping Fan, Zhixin Wen, Gang Song
Biodiv Sci    2025, 33 (8): 25022.   DOI: 10.17520/biods.2025022
Accepted: 03 June 2025

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Aims: Climatic change and anthropogenic activities have become the principal threats to global biodiversity. Genetic diversity, a fundamental component of biodiversity, is integral to species’ adaptation to environmental changes. Amphibians and mammals have distinct differences in evolutionary history, physiological functions, and ecological behaviors. Notably, their contrasting thermoregulatory capacities and mobility render amphibians may be more susceptible to climate change and human activities than mammals. However, it remains uncertain whether these differences result in divergent patterns of genetic diversity. Haplotype diversity and nucleotide diversity are the critical metrics in assessing genetic diversity, yet their respective responses to climatic and anthropogenic influences need to be further investigated.

Methods: This study concentrated on amphibians and mammals, employing the cytochrome c oxidase subunit I (COI) gene fragment to investigate the impacts of climatic factors and human activities on haplotype diversity and nucleotide diversity of these two vertebrate groups.

Results: We found a substantial difference in overall nucleotide diversity (D = 0.230, P < 0.01) and haplotype diversity (D = 0.211, P < 0.05) between amphibians and mammals. Distinct patterns were recorded on that how climatic and anthropogenic factors influenced nucleotide and haplotype diversity between the two groups. For amphibians, haplotype diversity was positively correlated with precipitation seasonality range (β = 0.467, P < 0.05), while it was negatively correlated with the annual temperature range (β = −0.223, P < 0.05). Furthermore, the human influence index (HII) showed a positive correlation with amphibian nucleotide diversity (β = 0.035, P < 0.05). Conversely, in mammals, HII was negatively correlated with haplotype diversity (β = ‒0.018, P < 0.05), whereas the annual temperature exhibited a positive correlation with nucleotide diversity (β = 0.002, P < 0.05).

Conclusion: Our results underscore the complexity of genetic diversity responses to climatic and anthropogenic influences. We advocate for the integration of multiple metrics to investigate the distribution patterns of genetic diversity and their driving factors. Future research should further explore the mechanisms through which human activities and climatic factors impact genetic diversity across various animal groups, aiming to develop more targeted biodiversity conservation strategies.

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Fish species diversity background and community structure in the main inland water bodies of Shanghai
Zhengdong Pan, Xirong Lin, Hua Xue, Zhiying Hu, Hongyi Guo, Ya Zhang, Enuo Wu, Wenqiao Tang
Biodiv Sci    2025, 33 (6): 24290.   DOI: 10.17520/biods.2024290
Accepted: 20 March 2025

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Aims: Our objective is to provide a better understanding on the background and community structure of fish diversity in the main inland water bodies of Shanghai.

Methods: We used specimens from 13 rivers and one reservoir in Shanghai to investigate the species resources and community structure of fish in the main inland water bodies of Shanghai. These specimens were examined qualitatively and quantitatively from July to August in summer and then from October to November in autumn in 2023.

Results: A total of 20,160 specimens belonging to 16 orders, 24 families, 57 genera, and 71 species were collected and identified. Cypriniformes, Gobiiformes, and Siluriformes accounted for 57.74%, 9.86%, and 5.63% of the total species, respectively. There were 57 species of freshwater fish, 11 species of estuarine fish, 3 species of migratory fish, and 5 exotic or artificial species. The high taxonomic composition of series Percomorpha and the rich ecological types of estuarine fish represented the characteristics of fish composition in estuarine tidal river networks in eastern China. There was an average of 35.9 species of fish in the 14 water bodies. The Punan Canal and Pudong Canal had the largest number with 47 species each, and Dishui Lake had the smallest number with 24 species. There were 15 dominant species and 14 common species with the average being 5 dominant species and 10 common species in each water body. Carassius auratus, Acheilognathus macropterus, Culter dabryi, and Chanodichthys erythropterus were the dominant species in the 14 water bodies. The Margalef richness index (D), Shannon diversity index (H'), Pielou evenness index (J'), and Simpson dominance index (C) showed fish diversity is higher in the 13 rivers such as Yuanxie River and lowest in Dishui Lake. The Cody index (βc) of each water body ranged from 4.0-15.5 with an average of 9.9. A large species diversity was shown by the Routledge index (βR) ranging from 12.44 to 28.76 with an average of 19.8. The ABC curve showed W was negative in most water bodies, and the abundance dominance curve was mostly above the biomass curve, showing the characteristics of community structure dominated by small and medium-sized individual fish. The fish communities in 14 water bodies were divided into 4 groups by cluster analysis. The similarities within the groups were approximately 74%, with the exception of the first group, and the differences between the groups were 31.42%-49.65%. The highest contribution of differences was Carassius auratus, Pseudorasbora parva, and Chanodichthys mongolicus.

Conclusion: Our results suggest the differences of fish community structure of main inland water bodies in Shanghai may be caused by natural conditions, regional location, release activities of the water bodies, and the land use forms where the water bodies are located. The water of the metropolis with dense buildings can also maintain a high diversity of fish species under the premise of protecting the water environment and fish habitat.

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Several key questions when conducting a meta-analysis
Shuang Zhang, Bo Song
Biodiv Sci    2026, 34 (1): 25308.   DOI: 10.17520/biods.2025308
Accepted: 09 January 2026

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Background & Aims: Meta-analysis is a crucial statistical tool for deriving generalized conclusions through the weighted analysis of data from case studies, with broad applications in ecology. However, for a long time, researchers have significant misconceptions regarding the fundamental principles and methodological framework of meta-analysis, which has contributed to its misuse, even erroneous application.

Review Results: According to the standard steps of conducting a meta-analysis, this article summarizes the basic feature of meta-analysis and highlights critical considerations for its application, encompassing aspects such as: defining key concepts, literature search and screening, construction of effect sizes, selection of models, incorporation of special data structures, inclusion of explanatory variables, assessment of result reliability, and relevant software tools.

Conclusion: The clarifications of related concepts and key points will aid in constructing more precise and appropriate meta-analysis models, thereby enhancing the reliability of results. Furthermore, continued advancements in meta-analysis methodology is poised to offer more robust and reliable technical approaches for addressing numerous fundamental scientific questions in ecology.

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Ancient tree biocultural micro-conservation site: An innovative conservation pathway synergizing biological and cultural elements
Xiaoshuang Li, Jianzhong Ma
Biodiv Sci    2025, 33 (12): 25295.   DOI: 10.17520/biods.2025295
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Background & Aims: The ancient tree biocultural micro-conservation site (ATBMS) represents an innovative conservation pathway designed to synergistically protect the biological and cultural elements of ancient trees. This paper systematically elucidates its conceptual connotation and characteristics. It clarifies its unique position and value within the global protected area system. Through a comprehensive review of the development history of natural protected areas, a comparative analysis of related models such as other effective area-based conservation measures (OECMs), plant micro-reserves, and small-scale natural conservation areas, and case studies.

Review Results: This research delineates the composite features of ATBMS, which centers on individual or small clusters of ancient trees while integrating their micro-habitats and cultural spaces. The core innovation of ATBMS lies in achieving fine-scale, synergistic conservation across both ecological and cultural dimensions. It addresses the gaps in OECMs regarding “cultural and fine-scale protection”, overcomes the “ecological-cultural divide” inherent in traditional small-scale protected areas, and complements small-scale natural conservation areas. Based on this, the study proposes differentiated conservation strategies tailored to various types of ancient trees (e.g., individual/clustered, natural/cultivated, urban/rural).

Conclusion: ATBMS can provide critical habitats for local biodiversity while preserving traditional knowledge and cultural memory. It serves as an effective complement to OECMs and offers an innovative paradigm of “precise and micro-scale guardianship” for global biocultural diversity conservation. Future efforts should focus on developing robust assessment indicator systems, promoting interdisciplinary research, and improving community co-management mechanisms to establish a scientifically sound ATBMS conservation framework.

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Summer water source utilization patterns, activity range and suitable habitat distribution of Equus hemionus in Xinjiang Kalamaili National Park candidate area
Jicai Li, Changliang Shao, Shuaishuai Gao, Jia Li
Biodiv Sci    2025, 33 (7): 24509.   DOI: 10.17520/biods.2024509
Accepted: 30 April 2025

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Aims: Understanding the activity patterns, range, and suitable habitat distribution of Equus hemionus is essential for assessing its survival strategies in response to environmental changes.

Methods: In this study, we used camera trapping to survey water resource utilization patterns of Equus hemionus during summer season (June to August) from 2021 to 2023 in Kalamaili National Park candidate area. Meanwhile, we studied the kernel activity range of six rescue released Equus hemionus fitted with GPS satellite collars, tracking them from 2022 to 2024 in Kalamaili National Park candidate area. Finally, we combined camera trapping and GPS satellite data, and used the BIOMOD2 model to assess the suitable habitat distribution of species during the summer season, and evaluated the conservation gap within national park candidate area.

Results: The results showed that: (1) we obtained 5,996 independent detections of Equus hemionus at water resource during summer season. Among them, 2,825 independent-detections were recorded during the daytime, 2,212 in the nighttime, 459 in the morning and 500 at nightfall. (2) Equus hemionus exhibited random usage of water sites at nighttime (wi= 1.32), daytime (wi= 0.94), morning (wi= 0.98) and nightfall (wi= 1.07) in different time periods; the activity index at nighttime was slightly higher than in other three periods, with a peak activity period occurring between 23:00 and 04:00, while activity levels were relatively lower during the morning and nightfall periods; (3) the 50% kernel activity range was 4.98-162.18 km2, with a mean of 76.34 ± 69.36 km2; the 95% kernel activity range was 27.67-2,117.72 km2 with a mean of 892.95 ± 908.91 km2; (4) based on BIOMOD2 models, the suitable habitat area for Equus hemionus in Kalamaili National Park candidate area during summer was 1.94 × 104 km2, with 76.97% of the suitable habitat within national park candidate area boundaries.

Conclusion: Our study has preliminarily obtained the water resource utilization patterns, activity range and suitable habitat distribution of Equus hemionus in Kalamaili National Park candidate area. These findings enrich our understanding of behavioral ecology, and provide a scientific basis for developing conservation measures to protect the endangered species and their habitats in national park candidate area.

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Application of eDNA technology in amphibian surveys: A case study of Hunan Mangshan National Nature Reserve
Wen Peng, Zeshuai Deng, Wenbao Zheng, Lingxuan Gong, Yufeng Zeng, Hao Meng, Jun Chen, Daode Yang
Biodiv Sci    2025, 33 (6): 24552.   DOI: 10.17520/biods.2024552
Accepted: 26 May 2025

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Aims: Scientific protection and effective management of wildlife highly rely on baseline data regarding biological resources, and the precision of survey methods directly affects the objectivity and accuracy of resource assessments. Environmental DNA (eDNA) technology has been widely used in monitoring of fish community, but its application in amphibian surveys still remains relatively limited and is mostly focused on detecting specific species. This study takes Hunan Mangshan National Nature Reserve as a case study to evaluate the detection efficiency and accuracy of eDNA technology in amphibian surveys.

Methods: eDNA test samples were collected from 19 water sampling sites within the reserve between July to August 2023. eDNA data were then compared with data collected during the same period using traditional transect survey methods. By calculating α and β diversity, a comprehensive evaluation of the two methods results was conducted.

Results: Both methods detected 34 amphibian species, with 24 species identified by both approaches. Significant differences (P < 0.05) were observed between the two methods in terms of the Shannon-Wiener diversity index, Simpson dominance index, and Pielou evenness index. PCoA and ANOSIM analysis showed significant differences in species composition between the two methods (P < 0.05), potentially influenced by species behavior, sampling location and timing, and environmental disturbances.

Conclusion: This study demonstrates that while eDNA technology offers clear advantages in amphibian resource survey, it cannot yet completely replace traditional transect method. It is suggested that eDNA techniques be integrated with traditional approaches to obtain more comprehensive and accurate baseline data on amphibian resources, thereby supporting more informed conservation and management efforts.

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Interpretable machine learning and its applications in ecology
Yafei Shi, Furong Niu, Xiaomin Huang, Xing Hong, Xiangwen Gong, Yanli Wang, Dong Lin, Xiaoni Liu
Biodiv Sci    2026, 34 (1): 25210.   DOI: 10.17520/biods.2025210
Accepted: 19 September 2025

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Aims: The increasing adoption of machine learning in ecological research has enabled the modeling of complex, nonlinear ecological patterns. However, the “black-box” nature of many machine learning models limits their interpretability, hindering the extraction of ecological insights. This review aims to introduce the core concepts, methods, and practical tools of interpretable machine learning (IML), and to demonstrate how these techniques can enhance ecological understanding from predictive models.

Methods: We first clarify key distinctions among white-box model and black-box model, global interpretability and local interpretability, and intrinsic interpretability versus post-hoc interpretability models. Using a simulated dataset representing plant diversity and environmental variables (e.g., elevation, temperature, soil moisture), we apply both white-box models (e.g., linear regression, decision trees) and black-box models (e.g., random forest) to illustrate major interpretability techniques, including regression coefficients, permutation importance, partial dependence plots (PDP), accumulated local effects (ALE), Shapley additive explanations (SHAP), and local interpretable model-agnostic explanations (LIME).

Results: White-box models offer direct and transparent interpretability through their model structure, while black-box models require additional tools to derive explanations. Our case study shows that both model types can yield consistent insights about variable importance and ecological relationships. Furthermore, methods such as ALE and SHAP effectively address common limitations in conventional approaches like PDP by accounting for feature interactions and dependencies.

Conclusion: IML provides a valuable toolkit for improving model transparency and interpretability in ecological research. It serves as a crucial complement to traditional statistical modeling, enabling researchers to extract meaningful ecological interpretations from complex models. As ecological data and modeling complexity continue to grow, the integration of IML techniques will become increasingly important for hypothesis generation and ecological decision-making.

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Multidimensional diversity patterns and their environmental drivers of Lauraceae plants in Yunnan
Wenyan Chen, Xiuqin Ci, Junling Chen, Zhifang Liu, Lang Li, Jie Li
Biodiv Sci    2025, 33 (6): 24558.   DOI: 10.17520/biods.2024558
Accepted: 29 May 2025

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Aims: Analyzing biodiversity patterns across multiple dimensions such as species, evolution, and function is essential for deeply understanding biological diversification and informing effective conservation strategies. As the province with the richest biodiversity in China and an important distribution center of Lauraceae plants globally, Yunnan is a key region for studying the multidimensional diversity patterns of Lauraceae plants and their environmental driving mechanisms. To gain a comprehensive understanding of the multidimensional patterns of biodiversity and to enhance the conservation system in Yunnan, we focused on Lauraceae, which is highly endemic and threatened in Yunnan, to conduct studies on diversity patterns and conservation.

Methods: By collecting distribution data, we examined the multidimensional diversity patterns of Lauraceae in Yunnan, identified its endemism and diversity hotspots, analyzed the dominant environmental factors shaping these patterns, conducted conservation gap analysis to inform conservation planning.

Results: (1) The results indicated that there were 21 genera and 225 species of Lauraceae in Yunnan, and the diversity patterns of the different dimensions were mismatched. (2) Southeast Yunnan, South Yunnan, Southwest Yunnan, Northwest Yunnan, Northeast Yunnan, as well as the Ailaoshan-Wuliangshan area in the central part were the diversity hotspots and centers of endemism of Lauraceae in Yunnan. (3) Water and soil were the dominant factors affecting the patterns of Lauraceae in Yunnan. (4) Current protected areas in Yunnan did not adequately cover Lauraceae conservation hotspots, leaving 63.4% of the critical areas unprotected. Notably, 52.6% of these conservation hotspots were located in narrow areas adjacent to neighboring provinces and countries.

Conclusion: A multidimensional comprehensive analysis method should be employed to fully understand the distribution patterns of regional biodiversity, and develop scientific and effective conservation planning. The conservation planning of Yunnan needs to focus particularly on edge conservation hotspot grids that are adjacent to neighboring provinces or countries.

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New taxa of spiders (Araneae) from the world in 2024
Fanyu Bu, Yu Ding, Xiaolan Cheng, Xinyu Li, Yaxuan Zhang, Qiaoqiao He, Zhiyuan Yao
Biodiv Sci    2025, 33 (10): 25166.   DOI: 10.17520/biods.2025166
Accepted: 27 August 2025

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Aim: This paper focuses on the advancements in taxonomic studies of spiders in 2024 worldwide, with detailed statistical analyses of new taxa, type localities, arachnologists conducting such research, and journals publishing these works.

Results: A total of 1,048 new taxa were described in 2024, including 54 new genera and 994 new species. They belong to 68 families, with type localities spanning across 83 countries or regions. The new taxa were documented by 394 arachnologists in 329 papers, published separately in 65 different journals. Out of these 329 papers, 57 (17.3%) comprised revisions of selected higher taxa (at family and genus levels), regional studies, and monographs. The proportion of papers incorporating DNA analyses made up 14.9% (totaling 49 papers). Among the 994 new species, 643 new species were published based on both male and female specimens, accounting for 64.7% of the total, and 351 new species only published based on male or female specimens, accounting for 35.3%. China is the country with the highest number of new species discovered, a total of 309, accounting for 31.1% of the global tally. With as many as 92 arachnologists naming new spider taxa, China becomes the country with the highest number of publishing spider taxonomists, accounting for 23.4% of the world’s total. Among them, the most prolific arachnologist is Shuqiang Li, who described a total of 144 new taxa, comprising 13.7% of the worldwide total for 2024. Altogether, Li and the other 91 Chinese colleagues described a total of 344 new taxa, comprising 18 new genera and 326 new species from China, Vietnam, and the other six countries or regions. These new taxa described by Chinese arachnologists made up 32.8% of the 2024 global aggregate, higher than the Chinese output during the 2016-2020 period (28.1% on average), but lower than in 2021 (33.8%), 2022 (37.0%) and 2023 (41.2%).

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New taxa of vertebrate in China published in 2024
Jianping Jiang, Weitao Chen, Zhixin Wen, Dezhi Zhang, Shun Ma, Lulu Sui, Yaqian Cui, Yujuan Guo, Bo Cai, Bin Wang
Biodiv Sci    2025, 33 (10): 25317.   DOI: 10.17520/biods.2025317
Accepted: 18 November 2025

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Aim: To collate and report on new vertebrate taxa in China published in 2024.

Method: This paper summarizes the basic information about new vertebrate taxa in China from the academic literature published in 2024.

Results: In 2024, 133 new vertebrate taxa were recognized in China, including 97 new species, 24 new record species, and 7 subspecies elevated to species rank, in addition, 1 new subspecies was described, and 4 species were reinstated as valid. These taxa belong to 16 orders, 47 families, and 87 genera. Among them, there are 40 new species of fish; 30 species of amphibian, including 25 new species and 5 new record species; 43 species of reptile, including 28 new species and 10 new record species in China, in addition, plus 1 new subspecies and 4 reinstated valid species; 10 species of bird, including 6 subspecies elevated to species rank and 4 new record species; 10 species of mammal, including 4 new species, 5 new record species, and 1 subspecies elevated to species rank. Ectothermic vertebrates account 85% of new discoveries; most representative orders were Cypriniformes (28/40) for fish, Anura (26/30) for amphibians, Squamata (39/43) for reptiles, Passeriformes (8/10) for birds, and Eulipotyphla (5/10) for mammals. These 133 new vertebrate taxa were recorded across 34 provincial-level regions. Most species (115) were found in only one region, while Yunnan, Guangxi, Xizang, Guangdong, and Fujian were the top five regions, with 46, 25, 18, 18, and 13 species recorded, respectively. A total of 111 of these discovered taxa have been supported by molecular systematics. Most findings (126 taxa) were published in 28 academic journals, with 15 of which were published in 4 English journals and 9 of which were published in 3 Chinese journals in China.

Conclusion: This article provides essential baseline data for the classification and conservation of vertebrates in China. In addition, it highlights that ectothermic vertebrates are a major focus of current diversity research, and underscores the importance of an integrated taxonomic approach for future studies.

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Spatiotemporal dynamics of woody plant species diversity and aboveground biomass during near-nature forest reconstruction in Shanghai: A case study from the eco-island in Minhang District
Xiaoqing Wu, Meihui Zhang, Suting Ge, Manshu Li, Liangjun Da, Kun Song, Guochun Shen, Jian Zhang
Biodiv Sci    2025, 33 (5): 24444.   DOI: 10.17520/biods.2024444
Accepted: 11 March 2025

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Aims: Reconstruction of near-nature forests is an important approach to accelerate the recovery of urban vegetation and forest restoration. However, the spatial and temporal dynamics of species diversity, canopy structure, and biomass during the subtropical forest restoration remain unclear, especially in highly urbanized regions.

Methods: Based on long-term subtropical near-nature forest plant community that planted with native tree species in 2006 in Minhang District of the megacity Shanghai, we did the resurvey of plant community in 2023, and compared with the compositional changes of plant community through five historical surveys of core plots from 2007 to 2023. Aboveground biomass and the relations among aboveground biomass, species richness and tree height across temporal and spatial scales were analyzed using general linear regression.

Results: Along with near-nature forest succession, woody plant richness increased from 11 in 2007 to 18 in 2023, and stem density increased at early stages and then decreased. The aboveground biomass increased from 3.51 t/ha in 2007 to 208.83 t/ha in 2023. Evergreen tree species such as Camphora officinarum and Quercus myrsinifolia gradually became the dominant species. Aboveground biomass showed significant positive correlations with species richness (P < 0.01) and mean tree height (P < 0.001), and a significant negative correlation with stem density (P < 0.01). When comparing the compositional changes over space, at three scales of 5 m, 10 m and 20 m, the relations between aboveground biomass and stem density remained highly significantly positive (P < 0.001), but the relations with mean tree height shifted from no significant at 5 m scale to significantly negative at 10 m (P < 0.05) and 20 m (P < 0.05) scales.

Conclusion: During the 17-year subtropical forest restoration, the model of near-nature forest construction has clearly exhibited its efficacy in accelerating the succession process. These preliminary findings suggest that, during the construction and restoration of near-nature forests, we should pay attention to the dominant role of native tree species, and consider diverse species composition to effectively promote plant diversity and carbon storage.

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Applications and challenges of AI and LLMs in biodiversity conservation research and practices
Xuanhong Zhou, Jun Yang
Biodiv Sci    2025, 33 (10): 25179.   DOI: 10.17520/biods.2025179
Accepted: 16 September 2025

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Background & Aims: Biodiversity conservation is essential for ecological security and sustainable human development. Nevertheless, the intricate interactions within ecosystems and the impact of external influences like human actions and climate change create substantial hurdles for conservation efforts. The advent of artificial intelligence (AI) and large language models (LLMs) offers new opportunities in this field. This study aims to review how these technologies are being used.

Methods: We discussed recent progress in using AI and LLMs for biodiversity conservation research and practice. Our focus was on AI and LLMs in knowledge synthesis and discovery, ecosystem modeling, assessment and monitoring, decision-making, and fieldwork.

Results & Conclusion: There is great potential for AI and LLMs in biodiversity conservation research and practices. Despite the promise, challenges such as data quality, model response times, ecosystem heterogeneity, ethical considerations, and data security remain. Future research should focus on developing specialized AI models and building high-quality, multimodal biodiversity datasets to effectively address these challenges.

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The species diversity of terrestrial mammals in Hainan Province, China
Yang Yang, Rui Zou, Yaqin Qiao, Xiang Meng, Feiyun Tu
Biodiv Sci    2025, 33 (8): 25044.   DOI: 10.17520/biods.2025044
Accepted: 12 August 2025

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Aims: This study aims to systematically compile the species diversity of terrestrial mammals in Hainan Province, clarify the taxonomic status of certain species, and provide scientific references for the conservation and management of biodiversity in Hainan Province.

Methods: We systematically collected literature data on the classification and distribution of terrestrial mammals in Hainan Province over the past few decades. The study integrated field survey data, infrared camera monitoring data, and refers to the most recent references, including the Catalogue of Mammals in China (2024) and Diversity of China’s Mammals Inventory, Distribution and Conservation.

Results: The main results are as follows: (1) A total of 97 species of terrestrial mammals in Hainan Province, belonging to 9 orders, 26 families, and 61 genera. Chiroptera dominates, followed by Rodentia. (2) Among the 97 species, 6 are first-class nationally protected wild mammals, and 11 are second-class national protection. Additionally, 7 species are endemic to Hainan Province. According to the IUCN Red List (2021), 2 species are Critically Endangered (CR), 3 are Endangered (EN), 5 are Vulnerable (VU), and 6 are Near Threatened (NT). (3) From the perspective of faunal regions, 85 species belong to the Oriental realm, 9 species belong to the Palearctic realm, and 3 species are widely distributed. The Oriental realm accounts for 87.63% of the terrestrial mammal species in Hainan, showing absolute dominance. (4) A comparison with the 2009 revision of the mammal catalog of Hainan Island reveals 22 newly added species, including Chiromyscus langbians, Chiropodomys gliroides, Rattus andamanensis, R. exulans, Crocidura rapax, Eonycteris spelaea, Lyroderma lyra, Hipposideros pomona, H. pratti, Rhinolophus shortridgei, Miniopterus fuliginosus, Kerivoula furva, Harpiocephalus harpia, Murina aurata, M. eleryi, M. harrisoni, Myotis chinensis, M. davidii, M. horsfieldii, M. siligorensis, Pipistrellus pipistrellus, and P. tenuis. In contrast, 75 species listed in the previous catalog have been remained.

Conclusion: Through the compilation and updating of the terrestrial mammal species diversity in Hainan Province, our study provides foundational support for regional wildlife conservation and management efforts.

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The UNESCO MAB Hangzhou Strategic Action Plan shapes the decade-long future of the world’s Biosphere Reserves
Keping Ma
Biodiv Sci    2025, 33 (9): 25391.   DOI: 10.17520/biods.2025391
Accepted: 13 October 2025

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Background: Initiated in 1971, the Man and the Biosphere (MAB) Programme seeks to establish a scientific basis for strengthening the relationship between humans and the environment, recognizing humanity as an integral part of nature. Its core vehicle, the World Network of Biosphere Reserves, has expanded to 785 reserves across 142 countries. Following the momentum of four world congresses held in Minsk, Seville, Madrid, and Lima, the Hangzhou Action Plan emerged.

Methods & Results: This paper systematically elaborates on the evolution of the MAB Programme and provides an interpretation of its latest UNESCO MAB Hangzhou Strategic Action Plan. The Plan is structured around three parts: background, action targets, and monitoring and evaluation. Its main body contains 34 action targets focusing on three key areas: supporting global environmental protection and sustainable development agendas, strengthening the construction and development of the World Network of Biosphere Reserves, and advancing toward a sustainable future for humanity. Action Targets 1-13 translate global commitments—including the United Nations Sustainable Development Goals and the Kunming-Montreal Global Biodiversity Framework—into local action by safeguarding ecosystem integrity, expanding ecological restoration, and ensuring species and genetic diversity. Action Targets 14-26 reinforce the institutional, financial, and social foundations of the network through resource mobilization, inclusive governance, knowledge sharing, and international cooperation. Finally, Action Targets 27-34 focus on strengthening scientific research, adaptive governance, and global collaboration, ensuring that biosphere reserves serve as engines of innovation and education worldwide. Compared with the Madrid Action Plan and the Lima Action Plan, the Hangzhou Action Plan demonstrates stronger integration with global frameworks, places greater emphasis on equity, rights, and operational feasibility, and highlights financing and partnerships as core pillars. Despite challenges such as balancing conservation and development, addressing climate change, and coping with uneven resources, the Plan points the way toward a sustainable future of harmony between people and nature through enhanced partnerships, mainstreaming climate adaptation strategies, and promoting digital transformation.

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The status and challenges of insect hotels in the conservation of urban solitary bees and wasps diversity
Hao Zhou, Mingyi Wang, Chuge Zhang, Zhishu Xiao, Fang Ouyang
Biodiv Sci    2025, 33 (5): 24472.   DOI: 10.17520/biods.2024472
Accepted: 30 April 2025

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Aims: Global biodiversity is under serious threat due to the intensification of climate change and human activities in the ecosystems. As a result, governments and the public are increasingly focused on implementing measures to mitigate biodiversity loss. In recent years, insect hotels have emerged as an innovative approach to biodiversity conservation in urban park management, attracting significant attention and being gradually adopted. The primary purpose of insect hotels is to provide breeding, nesting, and overwintering sites for insects—particularly solitary bees—in urban environments. By doing so, insect hotels contribute to maintaining species diversity and population stability. However, a comprehensive understanding regarding of the effectiveness and challenges of insect hotels in conserving urban insect diversity is still lacking.

Progresses: To address this, we review the global research status of insect hotels, including aspects such as the number of studies, geographical distribution, targeted species, and the materials and specifications of nesting tubes.

Prospects: We summarize the positive impacts (pollination, pest control, and popular science education) and limitations (low occupancy rate, invasive alien species, increased harm from natural enemies and pathogens) of insect hotels in promoting solitary bee diversity in urban environments and propose specific improvement strategies. This study aims to provide a scientific foundation and practical guidance for sustainable development of urban biodiversity.

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Impact of climatic factors on the genetic diversity-species area relationship of birds
Ping Fan, Huan Wang, Zhixin Wen, Gang Song, Fuming Lei
Biodiv Sci    2025, 33 (8): 25072.   DOI: 10.17520/biods.2025072
Accepted: 22 July 2025

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Aims: Understanding the link between genetic diversity and species distribution is crucial for biodiversity conservation. Genetic diversity facilitates species’ adaptation to climate change, whereas area size results from the combined effects of climate change and species’ adaptive capacity. Under this context, climatic factors can be considered a pivotal link between genetic diversity and area size, exerting a regulatory influence on their relationship.

Methods: To assess the above hypothesis, the current study examined the cytochrome c oxidase subunit I (COI) gene fragment in avian species, exploring the influence of 8 climatic factors (annual temperature, annual temperature range, annual precipitation, annual precipitation range, precipitation seasonality, precipitation seasonality range, temperature seasonality, temperature seasonality range) on the relationships between haplotype diversity and area size, as well as nucleotide diversity and area size. Haplotype diversity and nucleotide diversity were utilized as principal indicators of genetic diversity in this analysis.

Results: Results show that the overall nucleotide diversity of birds was 0.008 ± 0.001(mean ± SE), and the haplotype diversity was 0.699 ± 0.011. Additionally, the results revealed that climatic factor differentially affect the relationship between genetic diversity and area size. Notably, climatic factor predominantly influence the relationship between haplotype diversity and area size indirectly by altering the area size (df = 6, χ2= 10.77, AIC = 2,231.8, BIC = 2,270.5). In contrast, for nucleotide diversity, the climatic factor exert a dual impact, affecting both the area size and nucleotide diversity, thereby mediating the relationship between nucleotide diversity and area size in a more complex manner (df = 0, χ2 = 0, AIC = 2,155.0, BIC = 2,219.6).

Conclusion: Our results recommend that multiple genetic diversity indices should be considered when examining the effects of climate change on genetic diversity. Additionally, more targeted biodiversity conservation strategies should be developed to effectively address the challenges posed by future climate change.

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