生物多样性 ›› 2019, Vol. 27 ›› Issue (6): 667-676. DOI: 10.17520/biods.2019013
翁茁先1,2,3,黄佳琼2,张仕豪2,余锴纯2,钟福生1,2,3,黄勋和2,3,*(),张彬1,*(
)
收稿日期:
2019-01-17
接受日期:
2019-05-20
出版日期:
2019-06-20
发布日期:
2019-06-14
通讯作者:
黄勋和,张彬
基金资助:
Weng Zhuoxian1,2,3,Huang Jiaqiong2,Zhang Shihao2,Yu Kaichun2,Zhong Fusheng1,2,3,Huang Xunhe2,3,*(),Zhang Bin1,*(
)
Received:
2019-01-17
Accepted:
2019-05-20
Online:
2019-06-20
Published:
2019-06-14
Contact:
Huang Xunhe,Zhang Bin
摘要:
全面了解中国乌骨鸡的遗传背景有利于保护和开发利用其种质资源。本研究测定了中国12个乌骨鸡品种线粒体细胞色素c氧化酶亚基I (cytochrome c oxidase subunit I, COI)基因, 比较分析其遗传多样性和群体遗传结构。255份乌骨鸡样品共检测到22个变异位点, 占分析位点的3.17%; 核苷酸多样性为0.00142-0.00339, 单倍型多样性为0.380-0.757, 其中略阳乌鸡核苷酸多样性最高, 德化黑鸡最低。检测到7个氨基酸变异位点, 来自6个品种共11个个体。定义了24种单倍型, 其中单倍型H1和H3为12个乌骨鸡品种共享, 出现频率分别为115次和64次; 盐津乌骨鸡单倍型数最多, 广西乌鸡最少。中性检验与错配分析显示实验种群未经历显著的群体扩张事件。分子变异分析显示81.06%的变异来自群体内; 品种间遗传距离为0.002-0.004, 品种间遗传分化系数Fst值为-0.035至0.594, 雪峰乌骨鸡与其他种群间的遗传分化程度最高。邻接树显示, 乌骨鸡未能独立形成分支, 不能从家鸡和红原鸡中有效区分开来。中国乌骨鸡中介网络图将24个单倍型分为3条进化主支, 呈现出一定的品种特异性, 由无量山乌骨鸡、云南盐津乌骨鸡和雪峰乌骨鸡组成单倍型H8、H9、H11、H12游离于这3条进化主支之外。增加其他家鸡和红原鸡COI基因的中介网络图主体结构与中国乌骨鸡的相同。结果表明中国乌骨鸡品种遗传多样性较低, 但品种间遗传分化显著, 可能是从当地家鸡中选育而来, 需要加强种质资源的保护。
翁茁先,黄佳琼,张仕豪,余锴纯,钟福生,黄勋和,张彬 (2019) 利用线粒体COI基因揭示中国乌骨鸡遗传多样性和群体遗传结构. 生物多样性, 27, 667-676. DOI: 10.17520/biods.2019013.
Weng Zhuoxian,Huang Jiaqiong,Zhang Shihao,Yu Kaichun,Zhong Fusheng,Huang Xunhe,Zhang Bin (2019) Genetic diversity and population structure of black-bone chickens in China revealed by mitochondrial COI gene sequences. Biodiversity Science, 27, 667-676. DOI: 10.17520/biods.2019013.
代号 Code | 品种名 Breed | 产地 Origin | 样本量 Sample size |
---|---|---|---|
LY | 略阳乌鸡 Lueyang chicken | 陕西省略阳县 Lueyang, Shaanxi | 10 |
WLS | 无量山乌骨鸡 Wuliangshan black-bone chicken | 云南省南涧县 Nanjian, Yunnan | 25 |
YJ | 盐津乌骨鸡 Yanjin black-bone chicken | 云南省盐津县 Yanjin, Yunnan | 24 |
ZX | 竹乡鸡 Zhuxiang chicken | 贵州省赤水市 Chishui, Guizhou | 32 |
XF | 雪峰乌骨鸡 Xuefeng black-bone chicken | 湖南省洪江市 Hongjiang, Hunan | 19 |
JS | 江山乌骨鸡 Jiangshan black-bone chicken | 浙江省江山市 Jiangshan, Zhejiang | 21 |
SK | 丝羽乌骨鸡 Silkies | 江西省泰和县 Taihe, Jiangxi | 25 |
YG | 余干乌骨鸡 Yugan black-bone chicken | 江西省余干县 Yugan, Jiangxi | 18 |
HY | 黄羽黑鸡 Huangyu black chicken | 江西省宜春市 Yichun, Jiangxi | 18 |
DH | 德化黑鸡 Dehua black chicken | 福建省德化县 Dehua, Fujian | 22 |
JH | 金湖乌凤鸡 Jinhu black-bone chicken | 福建省泰宁县 Taining, Fujian | 24 |
GX | 广西乌鸡 Guangxi black-bone chicken | 广西东兰县 Donglan, Guangxi | 17 |
表1 本研究样品信息
Table 1 Sample information of this study
代号 Code | 品种名 Breed | 产地 Origin | 样本量 Sample size |
---|---|---|---|
LY | 略阳乌鸡 Lueyang chicken | 陕西省略阳县 Lueyang, Shaanxi | 10 |
WLS | 无量山乌骨鸡 Wuliangshan black-bone chicken | 云南省南涧县 Nanjian, Yunnan | 25 |
YJ | 盐津乌骨鸡 Yanjin black-bone chicken | 云南省盐津县 Yanjin, Yunnan | 24 |
ZX | 竹乡鸡 Zhuxiang chicken | 贵州省赤水市 Chishui, Guizhou | 32 |
XF | 雪峰乌骨鸡 Xuefeng black-bone chicken | 湖南省洪江市 Hongjiang, Hunan | 19 |
JS | 江山乌骨鸡 Jiangshan black-bone chicken | 浙江省江山市 Jiangshan, Zhejiang | 21 |
SK | 丝羽乌骨鸡 Silkies | 江西省泰和县 Taihe, Jiangxi | 25 |
YG | 余干乌骨鸡 Yugan black-bone chicken | 江西省余干县 Yugan, Jiangxi | 18 |
HY | 黄羽黑鸡 Huangyu black chicken | 江西省宜春市 Yichun, Jiangxi | 18 |
DH | 德化黑鸡 Dehua black chicken | 福建省德化县 Dehua, Fujian | 22 |
JH | 金湖乌凤鸡 Jinhu black-bone chicken | 福建省泰宁县 Taining, Fujian | 24 |
GX | 广西乌鸡 Guangxi black-bone chicken | 广西东兰县 Donglan, Guangxi | 17 |
品种名 Breed | 变异位点数 No. of variable sites | 平均核苷酸差异 Average K (k) | 核苷酸多样性 Nucleotide diversity (π) | 单倍型多样性 Haplotype diversity (h) |
---|---|---|---|---|
略阳乌鸡 LY | 6 | 2.356 | 0.00339 ± 0.00064 | 0.733 ± 0.120 |
无量山乌骨鸡 WLS | 6 | 1.653 | 0.00238 ± 0.00026 | 0.743 ± 0.051 |
盐津乌骨鸡 YJ | 10 | 2.036 | 0.00293 ± 0.00042 | 0.757 ± 0.075 |
竹乡鸡 ZX | 7 | 2.018 | 0.00290 ± 0.00028 | 0.730 ± 0.056 |
雪峰乌骨鸡 XF | 6 | 1.310 | 0.00188 ± 0.00069 | 0.380 ± 0.134 |
江山乌骨鸡 JS | 7 | 1.952 | 0.00281 ± 0.00048 | 0.729 ± 0.078 |
丝羽乌骨鸡 SK | 7 | 0.993 | 0.00143 ± 0.00044 | 0.537 ± 0.115 |
余干乌骨鸡 YG | 5 | 1.804 | 0.00260 ± 0.00025 | 0.680 ± 0.074 |
黄羽黑鸡 HY | 5 | 1.523 | 0.00219 ± 0.00051 | 0.634 ± 0.093 |
德化黑鸡 DH | 4 | 0.987 | 0.00142 ± 0.00047 | 0.455 ± 0.114 |
金湖乌凤鸡 JH | 5 | 1.486 | 0.00214 ± 0.00044 | 0.572 ± 0.095 |
广西乌鸡 GX | 3 | 1.456 | 0.00209 ± 0.00034 | 0.485 ± 0.079 |
表2 12个乌骨鸡品种COI基因序列变异位点数、平均核苷酸差异、核苷酸多样性和单倍型多样性。品种代号同表1。
Table 2 The number of variable sites, average K (k), nucleotide diversity (π) and haplotype diversity (h) of COI gene in the 12 black-bone chicken breeds. Breed codes are the same as in Table 1.
品种名 Breed | 变异位点数 No. of variable sites | 平均核苷酸差异 Average K (k) | 核苷酸多样性 Nucleotide diversity (π) | 单倍型多样性 Haplotype diversity (h) |
---|---|---|---|---|
略阳乌鸡 LY | 6 | 2.356 | 0.00339 ± 0.00064 | 0.733 ± 0.120 |
无量山乌骨鸡 WLS | 6 | 1.653 | 0.00238 ± 0.00026 | 0.743 ± 0.051 |
盐津乌骨鸡 YJ | 10 | 2.036 | 0.00293 ± 0.00042 | 0.757 ± 0.075 |
竹乡鸡 ZX | 7 | 2.018 | 0.00290 ± 0.00028 | 0.730 ± 0.056 |
雪峰乌骨鸡 XF | 6 | 1.310 | 0.00188 ± 0.00069 | 0.380 ± 0.134 |
江山乌骨鸡 JS | 7 | 1.952 | 0.00281 ± 0.00048 | 0.729 ± 0.078 |
丝羽乌骨鸡 SK | 7 | 0.993 | 0.00143 ± 0.00044 | 0.537 ± 0.115 |
余干乌骨鸡 YG | 5 | 1.804 | 0.00260 ± 0.00025 | 0.680 ± 0.074 |
黄羽黑鸡 HY | 5 | 1.523 | 0.00219 ± 0.00051 | 0.634 ± 0.093 |
德化黑鸡 DH | 4 | 0.987 | 0.00142 ± 0.00047 | 0.455 ± 0.114 |
金湖乌凤鸡 JH | 5 | 1.486 | 0.00214 ± 0.00044 | 0.572 ± 0.095 |
广西乌鸡 GX | 3 | 1.456 | 0.00209 ± 0.00034 | 0.485 ± 0.079 |
单倍型 Haplotype | 变异位点 Variation sites | 单倍型在品种的分布(频率) Haplotype distribution in breeds (frequency) | 合计 Total |
---|---|---|---|
AP003321 | 6666666666677777777777 7777788889900012233333 1146704890012331537788 0255272216776245331467 ACATGTTTAATGAGACAGTCCA | ||
H1 | ...................... | LY5, WLS10, YJ4, ZX14, XF1, JS10, SK17, YG7, HY10, DH16, JH15, GX6 | 115 |
H2 | T..................... | ZX1 | 1 |
H3 | ...C.C...G............ | LY2, WLS2, YJ1, ZX9, XF15, JS4, SK2, YG8, HY2, DH3, JH5, GX11 | 64 |
H4 | T..C.C...G............ | ZX2 | 2 |
H5 | C..............T...... | ZX1 | 1 |
H6 | ..GC.C...G............ | ZX1 | 1 |
H7 | ...............T...... | WLS1, YJ1, ZX4, JS4, SK2, YG1, HY1, DH3, JH3 | 20 |
H8 | .........G...A........ | WLS7, YJ11, XF2 | 20 |
H9 | .........G..........T. | WLS5, YJ1 | 6 |
H10 | ......C............... | YJ4 | 4 |
H11 | ..G....C.G...A........ | YJ1 | 1 |
H12 | .GG......G..........T. | YJ1 | 1 |
H13 | ..................C... | SK1 | 1 |
H14 | ................G..... | SK2 | 2 |
H15 | ................GC.... | SK1 | 1 |
H16 | ....................TG | LY1 | 1 |
H17 | ...C.C...G..G......... | LY2 | 2 |
H18 | ...............T...T.. | XF1 | 1 |
H19 | ...C.C...G....G....... | JS1, JH1 | 2 |
H20 | ...CAC...G............ | JS1 | 1 |
H21 | ...........A...T...... | JS1 | 1 |
H22 | .....C...G............ | YG1 | 1 |
H23 | ..........A........... | YG1 | 1 |
H24 | ........G......T...... | HY5 | 5 |
表3 12个乌骨鸡品种线粒体COI基因的单倍型及其在不同品种的分布
Table 3 COI haplotypes and their distributions in the 12 black-bone chicken breeds
单倍型 Haplotype | 变异位点 Variation sites | 单倍型在品种的分布(频率) Haplotype distribution in breeds (frequency) | 合计 Total |
---|---|---|---|
AP003321 | 6666666666677777777777 7777788889900012233333 1146704890012331537788 0255272216776245331467 ACATGTTTAATGAGACAGTCCA | ||
H1 | ...................... | LY5, WLS10, YJ4, ZX14, XF1, JS10, SK17, YG7, HY10, DH16, JH15, GX6 | 115 |
H2 | T..................... | ZX1 | 1 |
H3 | ...C.C...G............ | LY2, WLS2, YJ1, ZX9, XF15, JS4, SK2, YG8, HY2, DH3, JH5, GX11 | 64 |
H4 | T..C.C...G............ | ZX2 | 2 |
H5 | C..............T...... | ZX1 | 1 |
H6 | ..GC.C...G............ | ZX1 | 1 |
H7 | ...............T...... | WLS1, YJ1, ZX4, JS4, SK2, YG1, HY1, DH3, JH3 | 20 |
H8 | .........G...A........ | WLS7, YJ11, XF2 | 20 |
H9 | .........G..........T. | WLS5, YJ1 | 6 |
H10 | ......C............... | YJ4 | 4 |
H11 | ..G....C.G...A........ | YJ1 | 1 |
H12 | .GG......G..........T. | YJ1 | 1 |
H13 | ..................C... | SK1 | 1 |
H14 | ................G..... | SK2 | 2 |
H15 | ................GC.... | SK1 | 1 |
H16 | ....................TG | LY1 | 1 |
H17 | ...C.C...G..G......... | LY2 | 2 |
H18 | ...............T...T.. | XF1 | 1 |
H19 | ...C.C...G....G....... | JS1, JH1 | 2 |
H20 | ...CAC...G............ | JS1 | 1 |
H21 | ...........A...T...... | JS1 | 1 |
H22 | .....C...G............ | YG1 | 1 |
H23 | ..........A........... | YG1 | 1 |
H24 | ........G......T...... | HY5 | 5 |
品种名 Breed | 变异位点 Variation sites | 氨基酸变异 Amino acid variation | 变异数 Variation number |
---|---|---|---|
AP003321 | 0000122 1235124 9010875 YLTEVDI | ||
竹乡鸡 ZX | F...... | 酪氨酸→苯丙氨酸 Tyrosine → Phenylalanine | 3 |
竹乡鸡 ZX | S...... | 酪氨酸→丝氨酸 Tyrosine → Serine | 1 |
竹乡鸡 ZX | ..A.... | 苏氨酸→丙氨酸 Threonine → Alanine | 1 |
盐津乌骨鸡 YJ | ..A.... | 苏氨酸→丙氨酸 Threonine → Alanine | 1 |
盐津乌骨鸡 YJ | .VA.... | 亮氨酸→缬氨酸, 苏氨酸→丙氨酸 Leucine → Valine, Threonine → Alanine | 1 |
丝羽乌骨鸡 SK | .....H. | 天冬氨酸→组氨酸 Asparagine → Histidine | 1 |
略阳乌鸡 LY | ......V | 异亮氨酸→缬氨酸 Isoleucine → Valine | 1 |
江山乌骨鸡 JS | ...K... | 谷氨酸→赖氨酸 Glutamic acid → Lysine | 1 |
余干乌骨鸡 YG | ....E.. | 缬氨酸→谷氨酸 Valine → Glutamic acid | 1 |
表4 COI基因编码的氨基酸变异及其在不同品种的分布。品种代号同表1。
Table 4 Amino acid variation of COI gene and their distribution in these black-bone chicken breeds. Breed codes are the same as in Table 1.
品种名 Breed | 变异位点 Variation sites | 氨基酸变异 Amino acid variation | 变异数 Variation number |
---|---|---|---|
AP003321 | 0000122 1235124 9010875 YLTEVDI | ||
竹乡鸡 ZX | F...... | 酪氨酸→苯丙氨酸 Tyrosine → Phenylalanine | 3 |
竹乡鸡 ZX | S...... | 酪氨酸→丝氨酸 Tyrosine → Serine | 1 |
竹乡鸡 ZX | ..A.... | 苏氨酸→丙氨酸 Threonine → Alanine | 1 |
盐津乌骨鸡 YJ | ..A.... | 苏氨酸→丙氨酸 Threonine → Alanine | 1 |
盐津乌骨鸡 YJ | .VA.... | 亮氨酸→缬氨酸, 苏氨酸→丙氨酸 Leucine → Valine, Threonine → Alanine | 1 |
丝羽乌骨鸡 SK | .....H. | 天冬氨酸→组氨酸 Asparagine → Histidine | 1 |
略阳乌鸡 LY | ......V | 异亮氨酸→缬氨酸 Isoleucine → Valine | 1 |
江山乌骨鸡 JS | ...K... | 谷氨酸→赖氨酸 Glutamic acid → Lysine | 1 |
余干乌骨鸡 YG | ....E.. | 缬氨酸→谷氨酸 Valine → Glutamic acid | 1 |
品种名 Breed | Tajima’s D | Fu’s Fs | ||
---|---|---|---|---|
D | P | Fs | P | |
略阳乌鸡 LY | 0.45768 | 0.70000 | 0.96375 | 0.68900 |
无量山乌骨鸡 WLS | 0.12109 | 0.56400 | 0.49464 | 0.62700 |
盐津乌骨鸡 YJ | -0.79944 | 0.25300 | -1.69126 | 0.17200 |
竹乡鸡 ZX | 0.99606 | 0.85100 | -0.31381 | 0.45400 |
雪峰乌骨鸡 XF | -0.76698 | 0.25300 | 0.57269 | 0.65900 |
江山乌骨鸡 JS | 0.01119 | 0.54100 | -0.25147 | 0.44900 |
丝羽乌骨鸡 SK | -1.43529 | 0.07300 | -1.92588 | 0.07000 |
余干乌骨鸡 YG | 0.76262 | 0.79100 | 0.24173 | 0.59100 |
黄羽黑鸡 HY | 0.15067 | 0.60000 | 0.87825 | 0.69200 |
德化黑鸡 DH | -0.28222 | 0.43600 | 1.28651 | 0.75700 |
金湖乌凤鸡 JH | 0.31722 | 0.67500 | 1.19223 | 0.77300 |
广西乌鸡 GX | 1.81444 | 0.97700 | 3.86919 | 0.94800 |
平均 Average | 0.11225 | 0.55950 | 0.44305 | 0.57342 |
方差 Squared deviation | 0.87539 | 0.26761 | 1.50012 | 0.25155 |
表5 12个乌骨鸡品种的COI序列中性检验。品种代号同表1。
Table 5 Neutrality test in 12 breeds based on COI sequences. Breed codes are the same as in Table 1.
品种名 Breed | Tajima’s D | Fu’s Fs | ||
---|---|---|---|---|
D | P | Fs | P | |
略阳乌鸡 LY | 0.45768 | 0.70000 | 0.96375 | 0.68900 |
无量山乌骨鸡 WLS | 0.12109 | 0.56400 | 0.49464 | 0.62700 |
盐津乌骨鸡 YJ | -0.79944 | 0.25300 | -1.69126 | 0.17200 |
竹乡鸡 ZX | 0.99606 | 0.85100 | -0.31381 | 0.45400 |
雪峰乌骨鸡 XF | -0.76698 | 0.25300 | 0.57269 | 0.65900 |
江山乌骨鸡 JS | 0.01119 | 0.54100 | -0.25147 | 0.44900 |
丝羽乌骨鸡 SK | -1.43529 | 0.07300 | -1.92588 | 0.07000 |
余干乌骨鸡 YG | 0.76262 | 0.79100 | 0.24173 | 0.59100 |
黄羽黑鸡 HY | 0.15067 | 0.60000 | 0.87825 | 0.69200 |
德化黑鸡 DH | -0.28222 | 0.43600 | 1.28651 | 0.75700 |
金湖乌凤鸡 JH | 0.31722 | 0.67500 | 1.19223 | 0.77300 |
广西乌鸡 GX | 1.81444 | 0.97700 | 3.86919 | 0.94800 |
平均 Average | 0.11225 | 0.55950 | 0.44305 | 0.57342 |
方差 Squared deviation | 0.87539 | 0.26761 | 1.50012 | 0.25155 |
图2 384只鸡的41个COI单倍型邻接树。R为红原鸡, B为乌骨鸡, D为家鸡, 数字表示样品数量。品种代号同表1。
Fig. 2 Neighbor-joining tree of 41 COI haplotypes deteced in the samples of 384 chickens. R, Red junglefowl; B, Black-bone chicken; D, Domestic chicken. Numbers represent the sample size. Breed codes are the same as in Table 1.
图3 COI基因中介网络图。连接点数字表示核苷酸转换的位置; 圆的大小对应单倍型频率, 不同鸡品种用不同颜色标注, 品种代号同表1。(a)中国12种255只乌骨鸡个体的24个COI单倍型。(b) 384只鸡个体的41个COI单倍型中介网络图。
Fig. 3 Median-joining network based on COI gene. The links are labeled by the nucleotide positions to designate transitions. Cycle size is roughly proportional to the haplotype frequency, the breeds are indicated by different colors, breed codes are the same as in Table 1. (a) Median-joining network of 24 COI haplotypes deteced in the samples of 255 individuals of 12 Chinese black-bone breeds. (b) Median-joining network of 41 COI haplotypes deteced in the samples of 384 individuals.
变异起源 Source of variation | 自由度 df | 平方和 Sum of squares | 方差组分 Variance components | 方差比例 Percentage of variance (%) |
---|---|---|---|---|
群体间 Among populations | 11 | 52.622 | 0.18826 | 18.94 |
群体内 Within populations | 243 | 195.743 | 0.805553 | 81.06 |
总变异 Total variation | 254 | 248.365 | 0.99378 | 100 |
表6 12种乌骨鸡种群遗传变异的分子变异分析
Table 6 AMOVA analysis of genetic variation of 12 black-bone chicken breeds
变异起源 Source of variation | 自由度 df | 平方和 Sum of squares | 方差组分 Variance components | 方差比例 Percentage of variance (%) |
---|---|---|---|---|
群体间 Among populations | 11 | 52.622 | 0.18826 | 18.94 |
群体内 Within populations | 243 | 195.743 | 0.805553 | 81.06 |
总变异 Total variation | 254 | 248.365 | 0.99378 | 100 |
Breed | LY | WLS | YJ | ZX | XF | JS | SK | YG | HY | DH | JH | GX |
---|---|---|---|---|---|---|---|---|---|---|---|---|
LY | 0.003 | 0.004 | 0.003 | 0.003 | 0.003 | 0.003 | 0.003 | 0.003 | 0.003 | 0.003 | 0.003 | |
WLS | 0.116* | 0.003 | 0.003 | 0.004 | 0.004 | 0.002 | 0.002 | 0.003 | 0.002 | 0.003 | 0.003 | |
YJ | 0.189* | 0.017 | 0.004 | 0.004 | 0.004 | 0.003 | 0.004 | 0.004 | 0.003 | 0.003 | 0.004 | |
ZX | -0.018 | 0.134* | 0.207* | 0.003 | 0.003 | 0.003 | 0.003 | 0.003 | 0.002 | 0.003 | 0.003 | |
XF | 0.231* | 0.427* | 0.433* | 0.248* | 0.004 | 0.004 | 0.003 | 0.004 | 0.004 | 0.003 | 0.002 | |
JS | 0.004 | 0.121* | 0.196* | -0.014 | 0.341* | 0.002 | 0.003 | 0.003 | 0.003 | 0.002 | 0.003 | |
SK | 0.178* | 0.192* | 0.269* | 0.134* | 0.594* | 0.074* | 0.003 | 0.002 | 0.001 | 0.002 | 0.003 | |
YG | -0.035 | 0.170* | 0.234* | -0.011 | 0.158* | 0.032 | 0.250* | 0.003 | 0.002 | 0.003 | 0.002 | |
HY | 0.165* | 0.204* | 0.261* | 0.120* | 0.535* | 0.051 | 0.079* | 0.223* | 0.002 | 0.002 | 0.004 | |
DH | 0.117 | 0.160* | 0.243* | 0.072 | 0.551* | 0.011 | -0.012 | 0.182* | 0.044 | 0.002 | 0.003 | |
JH | 0.013 | 0.121* | 0.206* | -0.001 | 0.403* | -0.033 | 0.445 | 0.546 | 0.067 | -0.011 | 0.003 | |
GX | 0.054 | 0.305* | 0.343* | 0.089* | 0.029 | 0.173* | 0.441* | -0.002 | 0.393* | 0.383* | 0.220* |
表7 12个乌骨鸡品种间Kiumura遗传双参数距离(上三角)和遗传分化系数(Fst) (下三角)。品种代号同表1。
Table 7 K2P distance (above diagonal) and fixation index (Fst) (below diagonal) among 12 black-bone chicken breeds. Breed codes are the same as in Table 1.
Breed | LY | WLS | YJ | ZX | XF | JS | SK | YG | HY | DH | JH | GX |
---|---|---|---|---|---|---|---|---|---|---|---|---|
LY | 0.003 | 0.004 | 0.003 | 0.003 | 0.003 | 0.003 | 0.003 | 0.003 | 0.003 | 0.003 | 0.003 | |
WLS | 0.116* | 0.003 | 0.003 | 0.004 | 0.004 | 0.002 | 0.002 | 0.003 | 0.002 | 0.003 | 0.003 | |
YJ | 0.189* | 0.017 | 0.004 | 0.004 | 0.004 | 0.003 | 0.004 | 0.004 | 0.003 | 0.003 | 0.004 | |
ZX | -0.018 | 0.134* | 0.207* | 0.003 | 0.003 | 0.003 | 0.003 | 0.003 | 0.002 | 0.003 | 0.003 | |
XF | 0.231* | 0.427* | 0.433* | 0.248* | 0.004 | 0.004 | 0.003 | 0.004 | 0.004 | 0.003 | 0.002 | |
JS | 0.004 | 0.121* | 0.196* | -0.014 | 0.341* | 0.002 | 0.003 | 0.003 | 0.003 | 0.002 | 0.003 | |
SK | 0.178* | 0.192* | 0.269* | 0.134* | 0.594* | 0.074* | 0.003 | 0.002 | 0.001 | 0.002 | 0.003 | |
YG | -0.035 | 0.170* | 0.234* | -0.011 | 0.158* | 0.032 | 0.250* | 0.003 | 0.002 | 0.003 | 0.002 | |
HY | 0.165* | 0.204* | 0.261* | 0.120* | 0.535* | 0.051 | 0.079* | 0.223* | 0.002 | 0.002 | 0.004 | |
DH | 0.117 | 0.160* | 0.243* | 0.072 | 0.551* | 0.011 | -0.012 | 0.182* | 0.044 | 0.002 | 0.003 | |
JH | 0.013 | 0.121* | 0.206* | -0.001 | 0.403* | -0.033 | 0.445 | 0.546 | 0.067 | -0.011 | 0.003 | |
GX | 0.054 | 0.305* | 0.343* | 0.089* | 0.029 | 0.173* | 0.441* | -0.002 | 0.393* | 0.383* | 0.220* |
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