Biodiv Sci ›› 2015, Vol. 23 ›› Issue (3): 299-305. DOI: 10.17520/biods.2014261
Special Issue: DNA条形码应用进展
• Special Feature: Advances in the Use of DNA Barcodes • Previous Articles Next Articles
Haitao Li*, Baoxue Zhang, Yang Gao, Xiaojun Shi, Peng Zhou
Received:
2014-12-17
Accepted:
2015-04-13
Online:
2015-06-08
Published:
2015-06-12
Contact:
Li Haitao
Haitao Li, Baoxue Zhang, Yang Gao, Xiaojun Shi, Peng Zhou. DNA barcoding in species identification of seashells: a case study in the ecological monitoring zone of Daya Bay, Guangdong[J]. Biodiv Sci, 2015, 23(3): 299-305.
Fig. 1 Phylogenetic tree based on COI gene sequences using neighbor-joining (NJ) method. Species names in bold contain sequences obtained from this study. NJ bootstrap values (>50%) and Bayesian inference posterior probabilities (in percentage) are shown at nodes.
Fig. 2 Phylogenetic tree based on 16S rRNA gene sequences using neighbor-joining (NJ) method. Species names in bold contain sequences obtained from this study. NJ bootstrap values (>50%) and Bayesian inference posterior probabilities (in percentage) are shown at nodes.
1 | Chen J, Li Q, Kong L, Yu H (2011) How DNA barcodes complement taxonomy and explore species diversity: the case study of a poorly understood marine fauna.PLoS ONE, 6, e21326. |
2 | Du FY (杜飞雁), Zhang HH (张汉华), Li CH (李纯厚), Wang XH (王雪辉), Jia XP (贾晓平) (2008a) Species composition and diversity of macrobenthic fauna in Daya Bay.Journal of Fishery Sciences of China(中国水产科学), 15, 252-259. (in Chinese with English abstract) |
3 | Du FY (杜飞雁), Zhang HH (张汉华), Li CH (李纯厚), Wang XH (王雪辉), Jia XP (贾晓平) (2008b) Study on species diversity of macrobenthos in Daya Bay, South China Sea.South China Fisheries Science(南方水产科学), 4(6), 33-41. (in Chinese with English abstract) |
4 | Du FY (杜飞雁), Wang XH (王雪辉), Li CH (李纯厚), Zhang HH (张汉华), Jia XP (贾晓平) (2009) Macrobenthic community structure in Daya Bay, South China Sea.Acta Ecologica Sinica(生态学报), 29, 1091-1098. (in Chinese with English abstract) |
5 | Du FY (杜飞雁), Wang XH (王雪辉), Jia XP (贾晓平), Yang SY (杨圣云), Ma SW (马胜伟), Chen HG (陈海刚), Li CH (李纯厚) (2011) Species composition and characteristics of macrobenthic fauna in Daya Bay, South China Sea.Journal of Fishery Sciences of China(中国水产科学), 18, 877-892. (in Chinese with English abstract) |
6 | Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R (1994) DNA primers for amplification of mitochondrial cytochrome c oxidase subunit 1 from diverse metazoan invertebrates.Molecular Marine Biology and Biotechnology, 3, 294-299. |
7 | Hajibabaei M, Singer GA, Clare EL, Hebert PD (2007) Design and applicability of DNA arrays and DNA barcodes in biodiversity monitoring.BMC Biology, 5, 24. |
8 | Hebert PD, Cywinska A, Ball SL, deWaard JR (2003a) Biological identifications through DNA barcodes.Proceedings of the Royal Society of London B: Biological Sciences, 270, 313-321. |
9 | Hebert PD, Ratnasingham S, deWaard JR (2003b) Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species.Proceedings of the Royal Society of London B: Biological Sciences, 270(Suppl. 1), S96-99. |
10 | Hishida Y (菱田嘉一) (2000) The Great Pictorial Book of Seashells. Kumi Corporation, Tokyo. (in Japanese) |
11 | Johnson SB, Warén A, Vrijenhoek RC (2008) DNA barcoding of Lepetodrilus limpets reveals cryptic species.Journal of Shellfish Research, 27, 43-51. |
12 | Knowlton N (1993) Sibling species in the sea.Annual Review of Ecology and Systematics, 24, 189-216. |
13 | Liu J, Li Q, Kong L, Zheng X (2011) Cryptic diversity in the pen shell Atrina pectinata (Bivalvia: Pinnidae): high divergence and hybridization revealed by molecular and morphological data.Molecular Ecology, 20, 4332-4345. |
14 | Liu RY (刘瑞玉) (2011) Progress of marine biodiversity studies in China seas.Biodiversity Science(生物多样性), 19, 614-626. (in Chinese with English abstract) |
15 | Liu SF (柳淑芳), Chen LL (陈亮亮), Dai FQ (戴芳群), Zhuang ZM (庄志猛) (2010) Application of DNA barcoding gene COI for classification family Sciaenidae.Oceanologia et Limnologia Sinica(海洋与湖沼), 41, 223-232. (in Chinese with English abstract) |
16 | Posada D (2008) jModelTest: phylogenetic model averaging.Molecular Biology and Evolution, 25, 1253-1256. |
17 | Puillandre N, Strong EE, Bouchet P, Boisselier MC, Couloux A, Samadi S (2009) Identifying gastropod spawn from DNA barcodes: possible but not yet practicable.Molecular Ecology Resources, 9, 1311-1321. |
18 | Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models.Bioinformatics, 19, 1572-1574. |
19 | Shen Y, Chen X, Murphy RW (2013) Assessing DNA barcoding as a tool for species identification and data quality control.PLoS ONE, 8, e57125. |
20 | Simon C, Frati F, Beckenbach A, Crespi B, Liu H, Flook P (1994) Evolution, weighting and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers.Annals of the Entomological Society of America, 87, 651-701. |
21 | Terranova MS, Brutto SL, Arculeo M, Mitton JB (2007) A mitochondrial phylogeography of Brachidontes variabilis (Bivalvia: Mytilidea) reveals three cryptic species.Journal of Zoological Systematics and Evolutionary Research, 45, 289-298. |
22 | Wang MX (王敏晓), Cheng FP (程方平), Li CL (李超伦), Sun S (孙松) (2011) DNA barcoding of zooplankton in the Jiaozhou Bay for species identification.Oceanologia et Limnologia Sinica(海洋与湖沼), 42, 702-710. (in Chinese with English abstract) |
23 | Wilke T, Falniowski A (2001) The genus Adriohydrobia (Hydrobiidae: Gastropoda): polytypic species or polymorphic populations?Journal of Zoological Systematics and Evolutionary Research, 39, 227-234. |
24 | Williams ST, Reid DG, Littlewood DT (2003) A molecular phylogeny of the Littorininae (Gastropoda: Littorinidae): unequal evolutionary rates, morphological parallelism, and biogeography of the Southern Ocean.Molecular Phylogenetics and Evolution, 28, 60-86. |
25 | Xu GZ (徐恭昭) (1989) Environments and Resources of Daya Bay (大亚湾环境与资源). Anhui Science and Technology Press, Hefei. (in Chinese) |
26 | Zhang SP (张素萍) (2007) On nine new record species of Ergalataxinae (Gastropoda, Muricidae) from China coast.Oceanologia et Limnologia Sinica(海洋与湖沼), 38, 542-548. (in Chinese with English abstract) |
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