生物多样性 ›› 2010, Vol. 18 ›› Issue (5): 480-488. DOI: 10.3724/SP.J.1003.2010.480
所属专题: 生物多样性信息学专题(I)
收稿日期:
2010-05-24
接受日期:
2010-08-14
出版日期:
2010-09-20
发布日期:
2010-09-20
通讯作者:
许哲平
作者简介:
* E-mail: xuzp@ibcas.ac.cn基金资助:
Zheping Xu*(), Jinzhong Cui, Haining Qin, Keping Ma
Received:
2010-05-24
Accepted:
2010-08-14
Online:
2010-09-20
Published:
2010-09-20
Contact:
Zheping Xu
摘要:
本文结合国际生物多样性信息学发展趋势和生物多样性e-Science相关平台, 在分析我国前期工作成果和相关问题的基础上, 提出了基于服务架构(Service-Oriented Architecture, 简称SOA)和国际空间标准服务ISO 19119的中国生物多样性e-Science平台的三层结构(资源层、服务层和应用层), 并对e-Science平台建设的几个重要方向进行阐述: 组建强有力的协调组织、数据规范化和扩展、海量数据存储和计算、本体构建和语义分析、专题分析和领域建模、服务标准和服务内容以及科学社区的建设, 为我国进行生物多样性e-Science平台建设提供理论依据。
许哲平, 崔金钟, 覃海宁, 马克平 (2010) 中国生物多样性e-Science平台建设构想. 生物多样性, 18, 480-488. DOI: 10.3724/SP.J.1003.2010.480.
Zheping Xu, Jinzhong Cui, Haining Qin, Keping Ma (2010) On the architecture of biodiversity e-Science infrastructure in China. Biodiversity Science, 18, 480-488. DOI: 10.3724/SP.J.1003.2010.480.
类型 Type | 网站名称 Website | 主要负责单位 Custodian | 网站主要内容 Main content of the website |
---|---|---|---|
I. 陆地数据 Terrestrial Data | |||
物种名录 Catalogue | 物种2000中国节点 Species 2000 China Node | 中科院生物多样性委员会 Biodiversity Committee, Chinese Academy of Sciences (CAS) | 2009年版本包括植物34,665种, 动物9,520种 34,665 plant species and 9,520 animal species in 2009 released CD |
中国高等植物名录 Catalogue of Life: Higher Plants in China | 中国科学院植物研究所 Institute of Botany, CAS | 12万余条植物名录 120 thousand plant species names | |
中国动物信息网 Animal Information Network of China | 中国科学院动物研究所 Institute of Zoology, CAS | 约34,300条物种和5,291条标本记录 about 34,300 animal species names and 5,291 animal specimens | |
基础科学生物数据中心 Biological Data Center for Basic Science | 中国科学院微生物研究所 Institute of Microbiology, CAS | 包括植物(34,000余种)、动物(30,502种)、微生物(9,169种)编目数据库等 Include 34,000 plant species, 30,502 animal species and 9,169 microbiology species in China | |
标本 Specimen | 中国数字植物标本馆(CVH) Chinese Virtual Herbarium | 中国科学院植物研究所 Institute of Botany, CAS | 15家植物标本馆的331万份标本, 其中167万份带照片, 180万份含空间信息 15 herbaria, 3.31 million plant specimens (1.67 million specimen photos and 1.8 million records containing geospatial data) |
自然保护区标本平台 Specimen from Nature Reserve | 中国林业科学研究院 The Chinese Academy of Forestry | 自然保护区标本55.56万号(动物标本21.1万, 植物标本34.46万) 555.6 thousand specimens from nature reserve(211 thousand animal specimens and 344.6 thousand plant specimens) | |
国家岩矿化石标本资源网 National Mineral & Fossil Resource | 中国地质大学(北京) China University of Geosciences, Beijing | 6万件岩矿化石标本信息 60 thousand mineral and fossil specimens | |
国家动物数字博物馆 National Digital Animal Museum | 中国科学院动物研究所 Institute of Zoology, CAS | 150万号生物标本信息, 1万张活体生物图片, 1,200张生物精细解剖图片 1.5 million animal specimen, 10 thousand living photos and 1,200 anatomy pictures | |
教学标本资源共享平台 Educational Specimen Resource Center | 四川大学 Sichuan University | 30多家高校, 共计252.万份动植物标本, 计2.1万张动植物彩色照片 More than 30 universities, 2.52 million plant and animal specimens, 21 thousand living photos | |
极地标本资源共享平台 Resource-sharing Platform of Polar Samples | 中国极地研究中心 The Polar Research Institute of China | 来自南北极的6,895个标本描述中英文信息和6,953张标本图片 6,895 specimen with English and Chinese description and 6,953 photos | |
GBIF上采自中国的标本 Specimen data collected from China now available on GBIF | GBIF (Global Biodiversity Information Facility) | 动物标本21.73万, 植物标本19.1万和微生物标本6,000份 217.3 thousand animal specimens, 191 thousand plant specimens and 6,000 microorganism specimens | |
国家农作物种质资源平台 National Crop Germplasm Resources Infrastructure in China | 中国农业科学院作物科学研究所 Institute of Crop Science, Chinese Academy of Agricultural Sciences | 实现了2,204个属、13,426个种, 共53.5万份种质资源的网络信息化共享 Information available for 535 thousands accessions of crop germplasm, belonging to 13,426 species and 2,204 genera | |
文献 Literature | BHL 中国节点 Biodiversity Heritage Library (BHL) China Node | 中国科学院生物多样性委员会 Biodiversity Committee of Chinese Academy of Sciences | 800多本经典分类书籍, 20多万页, 共计100万物种名称—页码记录, 包括植物分类文献, 少量动物和微生物文献 800 books, 200 thousand pages, about 1 million name-page records, mainly plant literature, several animal and microorganism literature |
中国生命科学文献 Chinese Biological Abstracts | 中国科学院上海生命科学研 究院 Shanghai Institutes for Biological Sciences, CAS | 800余种源期刊1985年以来的约20万条生物类文献数据 800+ journals, 200 thousand records for biological science from 1985 | |
类型 Type | 网站名称 Website | 主要负责单位 Custodian | 网站主要内容 Main content of the website |
图像 Images | 中国自然标本馆 Chinese Field Herbarium | 中国科学院植物研究所 Institute of Botany, CAS | 110万张野外植物照片, 其中有40万张得到鉴定 1.1 million plant photos (400 thousand identified) |
中国植物图像库 Photo Bank for China Plant | 中国科学院植物研究所 Institute of Botany, CAS | 45万张植物彩色照片, 涉及309科, 3,235属, 15,350种 450 thousand photos in 15,350 species, 3,235 genera and 309 families | |
社区 Community | EOL 中国节点 Encyclopedia of Life, China Node | 中国科学院生物多样性委员会 Biodiversity Committee, CAS | 分植物、动物和微生物三个学科 China Node for Encyclopedia of Life project, aiming at integrating the resource in plant, animal and microorganism |
生物秀 Biology Show | 上海易秀生物科技有限公司 Shanghai Yixiu Biotechnology Limited Company | 20余万社区用户, 已经形成论坛、知识、人才等频道的生物类门户雏形 200 thousand registered users, a large community on biology consisting of forum and knowledge columns | |
普兰塔(生物多样性论坛) Biodiversity Forum in China | 中科院植物研究所 Institute of Botany, CAS | 1.3万名用户, 主要讨论以植物学为主的生物多样性专业社区 13 thousand registered users, mainly focusing on biodiversity research in plant | |
野外台站 Field Observatory | 中国生态系统研究网络 Chinese Ecosystem Research Network(CERN) | 中国科学院地理与资源科学研究所 Institute of Geography and Natural Resource Science, CAS | 由36个长期定位研究站、5个学科分中心和1个综合研究中心所组成 Data from 36 long-term research stations, 5 disciplinary centers and 1 synthesis center |
II. 海洋数据 Marine Data | |||
中国海洋信息网 China Oceanic Information Network | 国家海洋信息中心 The National Marine Data and Information Service | 水文数据、海洋生物数据、Near-Goos气象数据、海洋环境监测站数据 Hydrological data, marine biology data, Near-Goos climate data and monitoring station data | |
南海海洋科学数据服务平台 South China Sea Scientific Data Service Platform | 中国科学院南海海洋研究所 South China Sea Science Database | 南海海洋化学、海洋生物、海洋地质、地球物理、海洋文献资料库等相关数据 Database on marine chemistry, marine biology, marine geology, geophysics and literature for South China Sea | |
III. 综合数据 Aggregate Data | |||
中国科技资源共享网 National Scientific & Technique Infrastructure | 国家科技基础条件平台中心 Computer Network Information Center, CAS | 标本324万, 动物种质资源9.36万份, 微生物种质资源8.1万份, 植物种质资源8.1万份 3.24 million specimen. Germplasm: animal (93.6 thousand), microorganism (81 thousand) and plant (81 thousand) | |
中国科普博览 Science & Museums of China | 中科院计算机网络信息中心 Computer Network Information Center, CAS | 国家大型科普网站, 含生物类相关科普知识 National popular science website, including popular biological knowledge |
表1 中国生物多样性数据主要站点列表(截至2010年8月10日)
Table 1 Main websites about biodiversity information in China (Until 10 August, 2010)
类型 Type | 网站名称 Website | 主要负责单位 Custodian | 网站主要内容 Main content of the website |
---|---|---|---|
I. 陆地数据 Terrestrial Data | |||
物种名录 Catalogue | 物种2000中国节点 Species 2000 China Node | 中科院生物多样性委员会 Biodiversity Committee, Chinese Academy of Sciences (CAS) | 2009年版本包括植物34,665种, 动物9,520种 34,665 plant species and 9,520 animal species in 2009 released CD |
中国高等植物名录 Catalogue of Life: Higher Plants in China | 中国科学院植物研究所 Institute of Botany, CAS | 12万余条植物名录 120 thousand plant species names | |
中国动物信息网 Animal Information Network of China | 中国科学院动物研究所 Institute of Zoology, CAS | 约34,300条物种和5,291条标本记录 about 34,300 animal species names and 5,291 animal specimens | |
基础科学生物数据中心 Biological Data Center for Basic Science | 中国科学院微生物研究所 Institute of Microbiology, CAS | 包括植物(34,000余种)、动物(30,502种)、微生物(9,169种)编目数据库等 Include 34,000 plant species, 30,502 animal species and 9,169 microbiology species in China | |
标本 Specimen | 中国数字植物标本馆(CVH) Chinese Virtual Herbarium | 中国科学院植物研究所 Institute of Botany, CAS | 15家植物标本馆的331万份标本, 其中167万份带照片, 180万份含空间信息 15 herbaria, 3.31 million plant specimens (1.67 million specimen photos and 1.8 million records containing geospatial data) |
自然保护区标本平台 Specimen from Nature Reserve | 中国林业科学研究院 The Chinese Academy of Forestry | 自然保护区标本55.56万号(动物标本21.1万, 植物标本34.46万) 555.6 thousand specimens from nature reserve(211 thousand animal specimens and 344.6 thousand plant specimens) | |
国家岩矿化石标本资源网 National Mineral & Fossil Resource | 中国地质大学(北京) China University of Geosciences, Beijing | 6万件岩矿化石标本信息 60 thousand mineral and fossil specimens | |
国家动物数字博物馆 National Digital Animal Museum | 中国科学院动物研究所 Institute of Zoology, CAS | 150万号生物标本信息, 1万张活体生物图片, 1,200张生物精细解剖图片 1.5 million animal specimen, 10 thousand living photos and 1,200 anatomy pictures | |
教学标本资源共享平台 Educational Specimen Resource Center | 四川大学 Sichuan University | 30多家高校, 共计252.万份动植物标本, 计2.1万张动植物彩色照片 More than 30 universities, 2.52 million plant and animal specimens, 21 thousand living photos | |
极地标本资源共享平台 Resource-sharing Platform of Polar Samples | 中国极地研究中心 The Polar Research Institute of China | 来自南北极的6,895个标本描述中英文信息和6,953张标本图片 6,895 specimen with English and Chinese description and 6,953 photos | |
GBIF上采自中国的标本 Specimen data collected from China now available on GBIF | GBIF (Global Biodiversity Information Facility) | 动物标本21.73万, 植物标本19.1万和微生物标本6,000份 217.3 thousand animal specimens, 191 thousand plant specimens and 6,000 microorganism specimens | |
国家农作物种质资源平台 National Crop Germplasm Resources Infrastructure in China | 中国农业科学院作物科学研究所 Institute of Crop Science, Chinese Academy of Agricultural Sciences | 实现了2,204个属、13,426个种, 共53.5万份种质资源的网络信息化共享 Information available for 535 thousands accessions of crop germplasm, belonging to 13,426 species and 2,204 genera | |
文献 Literature | BHL 中国节点 Biodiversity Heritage Library (BHL) China Node | 中国科学院生物多样性委员会 Biodiversity Committee of Chinese Academy of Sciences | 800多本经典分类书籍, 20多万页, 共计100万物种名称—页码记录, 包括植物分类文献, 少量动物和微生物文献 800 books, 200 thousand pages, about 1 million name-page records, mainly plant literature, several animal and microorganism literature |
中国生命科学文献 Chinese Biological Abstracts | 中国科学院上海生命科学研 究院 Shanghai Institutes for Biological Sciences, CAS | 800余种源期刊1985年以来的约20万条生物类文献数据 800+ journals, 200 thousand records for biological science from 1985 | |
类型 Type | 网站名称 Website | 主要负责单位 Custodian | 网站主要内容 Main content of the website |
图像 Images | 中国自然标本馆 Chinese Field Herbarium | 中国科学院植物研究所 Institute of Botany, CAS | 110万张野外植物照片, 其中有40万张得到鉴定 1.1 million plant photos (400 thousand identified) |
中国植物图像库 Photo Bank for China Plant | 中国科学院植物研究所 Institute of Botany, CAS | 45万张植物彩色照片, 涉及309科, 3,235属, 15,350种 450 thousand photos in 15,350 species, 3,235 genera and 309 families | |
社区 Community | EOL 中国节点 Encyclopedia of Life, China Node | 中国科学院生物多样性委员会 Biodiversity Committee, CAS | 分植物、动物和微生物三个学科 China Node for Encyclopedia of Life project, aiming at integrating the resource in plant, animal and microorganism |
生物秀 Biology Show | 上海易秀生物科技有限公司 Shanghai Yixiu Biotechnology Limited Company | 20余万社区用户, 已经形成论坛、知识、人才等频道的生物类门户雏形 200 thousand registered users, a large community on biology consisting of forum and knowledge columns | |
普兰塔(生物多样性论坛) Biodiversity Forum in China | 中科院植物研究所 Institute of Botany, CAS | 1.3万名用户, 主要讨论以植物学为主的生物多样性专业社区 13 thousand registered users, mainly focusing on biodiversity research in plant | |
野外台站 Field Observatory | 中国生态系统研究网络 Chinese Ecosystem Research Network(CERN) | 中国科学院地理与资源科学研究所 Institute of Geography and Natural Resource Science, CAS | 由36个长期定位研究站、5个学科分中心和1个综合研究中心所组成 Data from 36 long-term research stations, 5 disciplinary centers and 1 synthesis center |
II. 海洋数据 Marine Data | |||
中国海洋信息网 China Oceanic Information Network | 国家海洋信息中心 The National Marine Data and Information Service | 水文数据、海洋生物数据、Near-Goos气象数据、海洋环境监测站数据 Hydrological data, marine biology data, Near-Goos climate data and monitoring station data | |
南海海洋科学数据服务平台 South China Sea Scientific Data Service Platform | 中国科学院南海海洋研究所 South China Sea Science Database | 南海海洋化学、海洋生物、海洋地质、地球物理、海洋文献资料库等相关数据 Database on marine chemistry, marine biology, marine geology, geophysics and literature for South China Sea | |
III. 综合数据 Aggregate Data | |||
中国科技资源共享网 National Scientific & Technique Infrastructure | 国家科技基础条件平台中心 Computer Network Information Center, CAS | 标本324万, 动物种质资源9.36万份, 微生物种质资源8.1万份, 植物种质资源8.1万份 3.24 million specimen. Germplasm: animal (93.6 thousand), microorganism (81 thousand) and plant (81 thousand) | |
中国科普博览 Science & Museums of China | 中科院计算机网络信息中心 Computer Network Information Center, CAS | 国家大型科普网站, 含生物类相关科普知识 National popular science website, including popular biological knowledge |
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