生物多样性 ›› 2020, Vol. 28 ›› Issue (6): 718-726. DOI: 10.17520/biods.2019298
收稿日期:
2019-09-23
接受日期:
2020-02-15
出版日期:
2020-06-20
发布日期:
2020-05-21
通讯作者:
李靖宇
基金资助:
Xinying Jin1,Xiaochong Zhang1,Duo Jin1,Yun Chen1,Jingyu Li1,2,*()
Received:
2019-09-23
Accepted:
2020-02-15
Online:
2020-06-20
Published:
2020-05-21
Contact:
Jingyu Li
摘要:
微生物多样性对于生物土壤结皮在沙漠生态系统中改善局部环境以及提升生态功能具有重要作用。本研究对腾格里沙漠东南缘沙坡头地区藻结皮、藓结皮及其下层的四季样品进行了16S rDNA高通量测序, 以期阐明细菌多样性及其在生物土壤结皮演替过程中的季节变化规律。结果表明4种类型样品的细菌丰富度在夏季显著低于其他3个季节。4种类型样品中主要的细菌类群为变形菌门、放线菌门、绿弯菌门、酸杆菌门、蓝细菌门等, 其中变形菌门和放线菌门为优势类群, 夏季时变形菌门的相对多度显著高于春季、秋季、冬季, 且在结皮层中相对多度显著高于结皮下层。放线菌门的相对多度在春季、夏季显著高于秋季、冬季, 且结皮下层相对多度高于结皮层。生物土壤结皮演替过程中细菌多样性及其相对多度季节动态变化表明其对沙漠土壤局部环境的变化作出了响应, 这为深入理解生物土壤结皮在沙漠生态系统中的生态功能提供了微生物多样性数据。
靳新影, 张肖冲, 金多, 陈韵, 李靖宇 (2020) 腾格里沙漠东南缘不同生物土壤结皮细菌多样性及其季节动态特征. 生物多样性, 28, 718-726. DOI: 10.17520/biods.2019298.
Xinying Jin, Xiaochong Zhang, Duo Jin, Yun Chen, Jingyu Li (2020) Diversity and seasonal dynamics of bacteria among different biological soil crusts in the southeast Tengger Desert. Biodiversity Science, 28, 718-726. DOI: 10.17520/biods.2019298.
图3 不同季节的细菌门水平的相对多度。P < 0.05表示差异显著; P < 0.01表示差异极显著。
Fig. 3 Relative abundance of bacteria at phylum level among different seasons. P < 0.05 indicates a significant difference, P < 0.01 indicates an extremely significant difference.
图4 不同类型样品的细菌门水平的相对多度。P < 0.05表示差异显著; P < 0.01表示差异极显著。
Fig. 4 Relative abundance of bacteria at phylum level among different samples. P < 0.05 indicates a significant difference; P < 0.01 indicates an extremely significant difference.
[1] |
Abed RMM, Ramette A, Hübner V, Deckker PD, de Beer D (2012) Microbial diversity of eolian dust sources from saline lake sediments and biological soil crusts in arid Southern Australia. FEMS Microbiology Ecology, 80, 294-304.
URL PMID |
[2] |
Angel R, Conrad R (2013) Elucidating the microbial resuscitation cascade in biological soil crusts following a simulated rain event. Environmental Microbiology, 15, 2799-2815.
URL PMID |
[3] | Belnap J, Lange OL (2003) Biological Soil Crusts: Structure, Function, and Management, 2nd edn. Springer, Berlin. |
[4] |
Bolger AM, Lohse M, Usadel B (2014) Trimmomatic: A flexible trimmer for Illumina sequence data. Bioinformatics, 30, 2114-2120.
URL PMID |
[5] | Castle SC, Morrison CD, Barger NN (2015) Extraction of chlorophyll a from biological soil crusts: A comparison of solvents for spectrophotometric determination. Soil Biology and Biochemistry, 43, 853-856. |
[6] | Costa OYA, Raaijmakers JM, Kuramae EE (2018) Microbial extracellular polymeric substances: Ecological function and impact on soil aggregation. Frontiers in Microbiology, 9, 1636. |
[7] |
Dojani S, Kauff F, Weber B, Büdel B (2014) Genotypic and phenotypic diversity of Cyanobacteria in biological soil crusts of the succulent Karoo and Nama Karoo of Southern Africa. Microbial Ecology, 67, 286-301.
URL PMID |
[8] | Douterelo I, Goulder R, Lillie M (2010) Soil microbial community response to land-management and depth, related to the degradation of organic matter in English wetlands: Implications for the in situ preservation of archaeological remains. Applied Soil Ecology, 44, 219-227. |
[9] |
Edgar RC (2010) Search and clustering orders of magnitude faster than BLAST. Bioinformatics, 26, 2460-2461.
URL PMID |
[10] | Elbert W, Weber B, Büdel B, Andreae MO, Pöschl U (2009) Microbiotic crusts on soil, rock and plants: Neglected major players in the global cycles of carbon and nitrogen? Biogeosciences Discussions, 6, 6983-7015. |
[11] | Eldridge DJ, Koen TB (1998) Cover and floristics of microphytic soil crusts in relation to indices of landscape health. Plant Ecology, 137, 101-114. |
[12] |
Falkowski PG, Fenchel T, Delong EF, Falkowski PG, Fenchel T, Delong EF (2008) The microbial engines that drive earth’s biogeochemical cycles. Science, 320, 1034-1039.
DOI URL PMID |
[13] | Han BH, Niu DC, He L, Ren YT, Wu R, Fu H (2017) A review on the development and effect of biological soil crusts. Pratacultural Science, 34, 1793-1801. (in Chinese with English abstract) |
[ 韩炳宏, 牛得草, 贺磊, 任运涛, 吴让, 傅华 (2017) 生物土壤结皮发育及其影响因素研究进展. 草业科学, 34, 1793-1801.] | |
[14] | Hu CX, Liu YD, Song LR, Zhang DL (2002) Effect of desert soil algae on the stabilization of fine sands. Journal of Applied Phycology, 14, 281-292. |
[15] | Hu CX, Zhang DL, Liu YD (2004) Research progress on algae of the microbial crusts in arid and semiarid regions. Progress in Natural Science, 14, 289-295. |
[16] |
Kaiser C, Fuchslueger L, Koranda M, Gorfer M, Stange CF, Kitzler B (2011) Plants control the seasonal dynamics of microbial N cycling in a beech forest soil by belowground allocation. Ecology, 92, 1036-1051.
DOI URL PMID |
[17] | Kaiser C, Koranda M, Kitzler B, Fuchslueger L, Schnecker J, Schweiger P, Rasche F, Zechmeister-Boltenstern S, Sessitsch A, Richter A (2010) Belowground carbon allocation by trees drives seasonal patterns of extracellular enzyme activities by altering microbial community composition in a beech forest soil. New Phytologist, 187, 843-858. |
[18] |
Klatt CG, Liu Z, Ludwig M, Kuhl M, Jensen SI, Bryant DA, Ward DM (2013) Temporal metatranscriptomic patterning in phototrophic Chloroflexi inhabiting a microbial mat in a geothermal spring. The ISME Journal, 7, 1775-1789.
DOI URL PMID |
[19] | Lan SB, Wu L, Zhang DL, Hu CX (2012) Successional stages of biological soil crusts and their microstructure variability in Shapotou region (China). Environmental Earth Sciences, 65, 77-88. |
[20] | Li XR, Xiao HL, Zhang JG, Wang XP (2004) Long-term ecosystem effects of sand-binding vegetation in the Tengger Desert, northern China. Restoration Ecology, 12, 376-390. |
[21] | Li XR, Zhang YM, Zhao YG (2009) A study of biological soil crusts: Recent development trend and prospect. Advances in Earth Science, 24(1), 11-24. (in Chinese with English abstract) |
[ 李新荣, 张元明, 赵允格 (2009) 生物土壤结皮研究: 进展、前沿与展望. 地球科学进展, 24(1), 11-24.] | |
[22] | Liang BW, Liu CL, Wang YZ, Li WY, Yuan YB (2014) Effects of natural cover grass in pear orchard on soil pH in Yellow River Delta. Chinese Agricultural Science Bulletin, 30(1), 143-148. (in Chinese with English abstract) |
[ 梁博文, 刘成连, 王永章, 李文燕, 原永兵 (2014) 黄河三角洲梨园自然生草对土壤pH的影响. 中国农学通报, 30(1), 143-148.] | |
[23] |
Lipson DA, Schadt CW, Schmidt SK (2002) Changes in soil microbial community structure and function in an alpine dry meadow following spring snow melt. Microbial Ecology, 43, 307-314.
URL PMID |
[24] | Liu X, Wang SJ, Liu XM, Huang TZ, Li Y (2015) Characteristics and changes of soil bacterial community structure in karst area of Guizhou. Earth and Environment, 43, 490-497. (in Chinese with English abstract) |
[ 刘兴, 王世杰, 刘秀明, 黄天志, 李勇 (2015) 贵州喀斯特地区土壤细菌群落结构特征及变化. 地球与环境, 43, 490-497.] | |
[25] | López-Mondéjar R, Voříšková J, Větrovský T, Baldrian P (2015) The bacterial community inhabiting temperate deciduous forests is vertically stratified and undergoes seasonal dynamics. Soil Biology and Biochemistry, 87, 43-50. |
[26] |
Magoc T, Salzberg SL (2011) FLASH: Fast length adjustment of short reads to improve genome assemblies. Bioinformatics, 27, 2957-2963.
URL PMID |
[27] |
Maidak BL, Olsen GJ, Larsen N, Overbeek R, Mccaughey MJ, Woese CR (1997) The RDP (Ribosomal Database Project). Nucleic Acids Research, 25, 109-110.
URL PMID |
[28] | Maier S, Schmidt TSB, Zheng LJ, Peer T, Wagner V, Grube M (2014) Analyses of dryland biological soil crusts highlight lichens as an important regulator of microbial communities. Biodiversity and Conservation, 23, 1735-1755. |
[29] | Margesin R, Schinner F (2015) Biological decontamination of oil spills in cold environments. Journal of Chemical Technology and Biotechnology, 74, 381-389. |
[30] |
Pointing SB, Belnap J (2012) Microbial colonization and controls in dryland systems. Nature Reviews Microbiology, 10, 551-562.
URL PMID |
[31] | Sierra CA, Trumbore SE, Davidson EA, Vicca S (2015) Sensitivity of decomposition rates of soil organic matter with respect to simultaneous changes in temperature and moisture. Journal of Advances in Modeling Earth Systems, 7, 335-356. |
[32] | Su YG, Li XR, Zheng JG, Huang G (2009) The effect of biological soil crusts of different successional stages and conditions on the germination of seeds of three desert plants. Journal of Arid Environments, 73, 931-936. |
[33] | Wu L, Zhang GK, Chen XG, Lan SB, Zhang DL, Hu CX (2014) Development and succession of biological soil crusts and the changes of microbial biomasses. Environmental Science, 35, 1479-1485. (in Chinese with English abstract) |
[ 吴丽, 张高科, 陈晓国, 兰书斌, 张德禄, 胡春香(2014) 生物结皮的发育演替与微生物生物量变化. 环境科学, 35, 1479-1485.] | |
[34] | Wu N, Pan BR, Zhang YM (2004) Effects and ecological significance of soil-inhabiting microorganisms in the formation of biological soil crusts. Arid Zone Research, 21, 444-450. (in Chinese with English abstract) |
[ 吴楠, 潘伯荣, 张元明 (2004) 土壤微生物在生物结皮形成中的作用及生态学意义. 干旱区研究, 21, 444-450.] | |
[35] | Wu YH, Gao Q, Cheng GD (2002) Ecological function of biological soil crusts. Chinese Journal of Ecology, 21(4), 41-45. (in Chinese with English abstract) |
[ 吴玉环, 高谦, 程国栋 (2002) 生物土壤结皮的生态功能. 生态学杂志, 21(4), 41-45.] | |
[36] | Xu N, Tan GC, Wang HY, Gai XP (2016) Effect of biochar additions to soil on nitrogen leaching, microbial biomass and bacterial community structure. European Journal of Soil Biology, 74, 1-8. |
[37] | Yergeau E, Kowalchuk GA (2008) Responses of Antarctic soil microbial communities and associated functions to temperature and freeze-thaw cycle frequency. Environmental Microbiology, 10, 2223-2235. |
[38] | Zhang BG, Zhang W, Liu GX, Chen T, Wang L, Zhang GS, Wu XK, Tai XS, Long HZ, Mao WL (2012) Effect of freeze- thaw cycles on soil bacterial communities under different ecosystems in Qinghai-Tibet Plateau. Journal of Glaciology and Geocryology, 34, 1499-1507. (in Chinese with English abstract) |
[ 张宝贵, 张威, 刘光琇, 陈拓, 王鹭, 章高森, 伍修锟, 台喜生, 龙昊知, 毛文梁(2012) 冻融循环对青藏高原腹地不同生态系统土壤细菌群落结构的影响. 冰川冻土, 34, 1499-1507.] | |
[39] | Zhang TT, Wang X, Ren HB, Yu JP, Jin Y, Qian HY, Song XY, Ma KP, Yu MJ (2019) A comparative study on the community characteristics of secondary and old-growth evergreen broad-leaved forests in Gutianshan, Zhejiang Province. Biodiversity Science, 27, 1069-1080. (in Chinese with English abstract) |
[ 张田田, 王璇, 任海保, 余建平, 金毅, 钱海源, 宋小友, 马克平, 于明坚 (2019) 浙江古田山次生与老龄常绿阔叶林群落特征的比较. 生物多样性, 27, 1069-1080.] | |
[40] | Zhang W, Wei HL, Gao HW, Hu YG (2005) Advances of studies on soil microbial diversity and environmental impact factors. Chinese Journal of Ecology, 24(1), 48-52. (in Chinese with English abstract) |
[ 张薇, 魏海雷, 高洪文, 胡跃高 (2005) 土壤微生物多样性及其环境影响因子研究进展. 生态学杂志, 24(1), 48-52.] | |
[41] | Zhang YM, Wang XQ (2010) Summary on formation and developmental characteristics of biological soil crusts in desert areas. Acta Ecologica Sinica, 30, 4484-4492. (in Chinese with English abstract) |
[ 张元明, 王雪芹(2010) 荒漠地表生物土壤结皮形成与演替特征概述. 生态学报, 30, 4484-4492.] |
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