生物多样性

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西藏吉隆沟地区开花植物叶绿体基因组数据集

旦增尼玛1#,孙伟2#,李聪2,张纾意2,赵竹楠2,许永强1,普布卓玛1,罗诗琦2,达娃1*,周欣2*   

  1. 1. 西藏自治区高原生物研究所,吉隆沟生物多样性观测研究站,拉萨 850001;2. 农林生物安全全国重点实验室,农业农村部作物有害生物监测与绿色防控重点实验室,中国农业大学植物保护学院,北京 100193
  • 收稿日期:2025-07-14 修回日期:2025-08-07
  • 通讯作者: 达娃, 周欣

The Chloroplast Genome Dataset of Flowering Plants from the Jilong Valley Region in Xizang

Tenzin Nyima1#, Wei Sun2#, Cong Li2, Shuyi Zhang2, Zhunan Zhao2, Yongqiang Xu1, Zhuoma Pubu1,  Shiqi Luo2, Wa Da1*, Xin Zhou2*   

  1. 1. Institute of Plateau Biology of Xizang Autonomous Region, Jilong Valley Biodiversity Observation and Research Station, Lhasa 850001, China; 2. State Key Laboratory of Agricultural and Forestry Biosecurity, MOA Key Lab of Pest Monitoring and Green Management, College of Plant Protection, China Agriculture University, Beijing 100193, China
  • Received:2025-07-14 Revised:2025-08-07
  • Contact: Wa Da, Xin Zhou

摘要: 西藏吉隆沟生物多样性丰富,其中以传粉昆虫为主要媒介的传粉网络在维护生态系统的稳定性中发挥了重要作用。为了更高效的对当地传粉网络的组成和变化、以及关键传粉昆虫的食性组成等开展监测研究,本研究拟构建西藏吉隆沟的开花植物叶绿体数据库以用于花粉植物种类的分子鉴定。首先,我们基于中国数字植物标本馆数据,整理了吉隆镇6-11月份开花植物名录。通过NCBI公共数据库下载吉隆名录物种中已发表的叶绿体基因组数据,并基于高通量测序数据新组装和注释了9种植物的叶绿体基因组,其中包括3种在我国仅分布于西藏地区的植物物种,美丽唐松草、尼泊尔锦鸡儿以及耳叶象牙参(近危)。随后,我们对每种植物的64个蛋白质编码基因(Protein Coding Genes, PCGs)进行提取拼接以作为数据库参考序列。阶段性的吉隆开花植物叶绿体基因组数据库包含了419个开花植物物种。该数据库的建立将为吉隆沟传粉昆虫食物多样性组成和传粉偏好的分子鉴定提供重要的数据基础。

关键词: 数据库, 叶绿体基因组, 花粉, 吉隆沟

AbstractThe Jilong Valley in Tibet harbors rich biodiversity, with pollination networks primarily mediated by pollinators playing a crucial role in maintaining the stability of local ecosystems. To more efficiently monitor the composition and dynamics of pollination networks in this region, as well as the dietary composition of key pollinator species, this study aims to construct a chloroplast genome database of flowering plants in Jilong Valley for molecular identification of pollen plant species. First, based on data from the Chinese Virtual Herbarium, we compiled a checklist of flowering plant species in Jilong Town during the blooming season from June to November. Chloroplast genome sequences for species on this checklist were retrieved from the NCBI public database when available, and de novo assembly and annotation were performed for nine additional plant species using high-throughput sequencing data. Among these, three species are endemic to Tibet, including Thalictrum reniforme, Caragana sukiensis, Roscoea auriculata (Near Threatened). Subsequently, 64 protein-coding genes (PCGs) from each species were extracted and concatenated to serve as reference sequences for the database. The preliminary chloroplast genome database for flowering plants comprises 419 species. The establishment of this database will provide crucial reference data to support molecular identification of the dietary diversity and pollination preferences of pollinating insects in Jilong Valley.

Key words: Database, Chloroplast Genome, Pollen, Jilong Valley