Biodiv Sci ›› 2012, Vol. 20 ›› Issue (6): 676-684. DOI: 10.3724/SP.J.1003.2012.09083
Special Issue: 传粉生物学
• Research Report • Previous Articles Next Articles
Xia Wang1,2, Jing Wang1, Jinghu Jiang1,2, Ming Kang1,*()
Received:
2012-03-27
Accepted:
2012-06-25
Online:
2012-11-20
Published:
2013-01-04
Contact:
Ming Kang
Xia Wang, Jing Wang, Jinghu Jiang, Ming Kang. Genetic diversity and the mating system in a fragmented population of Tsoongiodendron odorum[J]. Biodiv Sci, 2012, 20(6): 676-684.
Fig. 1 Spatial distribution of the fragmented population of Tsoongiodendron odorum in Nankunshan. + represents adult trees, and ? represents seed trees.
斑块 Stand | 成株数目 No. of adults | 采种成株 No. of seed trees | 果实数目 No. of fruits | 种子数目 No. of seeds |
---|---|---|---|---|
NKS1 | 5 | 1 | 4 | 60 |
NKS2 | 13 | 3 | 9 | 134 |
NKS3 | 20 | 7 | 26 | 389 |
NKS4 | 16 | 3 | 11 | 168 |
NKS5 | 7 | 1 | 2 | 29 |
总计 Total | 61 | 15 | 52 | 780 |
Table 1 The number of adults, seed trees, fruits and seeds sampled from each stand in the fragmented population of Tsoongiodendron odorum
斑块 Stand | 成株数目 No. of adults | 采种成株 No. of seed trees | 果实数目 No. of fruits | 种子数目 No. of seeds |
---|---|---|---|---|
NKS1 | 5 | 1 | 4 | 60 |
NKS2 | 13 | 3 | 9 | 134 |
NKS3 | 20 | 7 | 26 | 389 |
NKS4 | 16 | 3 | 11 | 168 |
NKS5 | 7 | 1 | 2 | 29 |
总计 Total | 61 | 15 | 52 | 780 |
引物 Primer | 成株 Adults | 种子 Seeds | 总计 Total | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
NKS1 | NKS2 | NKS3 | NKS4 | NKS5 | NKS1 | NKS2 | NKS3 | NKS4 | NKS5 | |||
TOD1 | 1 | 3 | 3 | 3 | 2 | 2 | 3 | 3 | 3 | 1 | 3 | |
TOD2 | 2 | 3 | 3 | 4 | 3 | 3 | 3 | 4 | 4 | 3 | 4 | |
TOD5 | 3 | 6 | 6 | 9 | 5 | 5 | 7 | 7 | 6 | 4 | 9 | |
TOD6 | 4 | 5 | 6 | 5 | 4 | 4 | 5 | 6 | 5 | 4 | 6 | |
TOD8 | 2 | 1 | 2 | 3 | 2 | 1 | 3 | 3 | 2 | 1 | 3 | |
TOD11 | 2 | 2 | 2 | 3 | 3 | 2 | 3 | 2 | 3 | 2 | 3 | |
TOD12 | 2 | 2 | 3 | 3 | 3 | 3 | 4 | 3 | 3 | 2 | 5 | |
TOD52 | 4 | 6 | 9 | 9 | 5 | 9 | 7 | 10 | 8 | 2 | 15 | |
总计 Total | 20 | 28 | 34 | 39 | 27 | 29 | 35 | 38 | 34 | 19 | 48 |
Table 2 The number of alleles of eight microsatellite loci for adult trees and seeds in the fragmented population of Tsoongiodendron odorum
引物 Primer | 成株 Adults | 种子 Seeds | 总计 Total | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
NKS1 | NKS2 | NKS3 | NKS4 | NKS5 | NKS1 | NKS2 | NKS3 | NKS4 | NKS5 | |||
TOD1 | 1 | 3 | 3 | 3 | 2 | 2 | 3 | 3 | 3 | 1 | 3 | |
TOD2 | 2 | 3 | 3 | 4 | 3 | 3 | 3 | 4 | 4 | 3 | 4 | |
TOD5 | 3 | 6 | 6 | 9 | 5 | 5 | 7 | 7 | 6 | 4 | 9 | |
TOD6 | 4 | 5 | 6 | 5 | 4 | 4 | 5 | 6 | 5 | 4 | 6 | |
TOD8 | 2 | 1 | 2 | 3 | 2 | 1 | 3 | 3 | 2 | 1 | 3 | |
TOD11 | 2 | 2 | 2 | 3 | 3 | 2 | 3 | 2 | 3 | 2 | 3 | |
TOD12 | 2 | 2 | 3 | 3 | 3 | 3 | 4 | 3 | 3 | 2 | 5 | |
TOD52 | 4 | 6 | 9 | 9 | 5 | 9 | 7 | 10 | 8 | 2 | 15 | |
总计 Total | 20 | 28 | 34 | 39 | 27 | 29 | 35 | 38 | 34 | 19 | 48 |
生活史 Stage | 斑块 Stands | 样本 Sample size (N) | 等位基因数 No. of alleles per locus (A) | 等位基因丰富度 Allelic richness per locus (AR) | 观测杂合度 Observed heterozygosity (HO) | 预期杂合度 Expected heterozygosity (HE) | 近交系数 Inbreeding coefficient (FIS) |
---|---|---|---|---|---|---|---|
成株 Adults | NKS1 | 5 | 2.50 | 2.30 | 0.588 | 0.464 | -0.267* |
NKS2 | 13 | 3.50 | 2.39 | 0.450 | 0.454 | 0.009 | |
NKS3 | 20 | 4.25 | 2.58 | 0.621 | 0.547 | -0.134* | |
NKS4 | 16 | 4.89 | 2.76 | 0.610 | 0.575 | -0.061 | |
NKS5 | 7 | 3.88 | 2.68 | 0.542 | 0.568 | 0.047 | |
平均 Average | 12.2 | 3.80 | 2.54 | 0.569 | 0.532 | -0.070 | |
种子 Seeds | NKS1 | 60 | 3.63 | 2.38 | 0.652 | 0.496 | -0.315* |
NKS2 | 134 | 4.38 | 2.48 | 0.597 | 0.518 | -0.150* | |
NKS3 | 389 | 4.75 | 2.50 | 0.542 | 0.538 | -0.007 | |
NKS4 | 168 | 4.25 | 2.59 | 0.654 | 0.571 | -0.143* | |
NKS5 | 29 | 2.38 | 1.97 | 0.455 | 0.370 | -0.229* | |
平均 Average | 156 | 3.88 | 2.38 | 0.581 | 0.532 | -0.092 |
Table 3 Genetic diversity for adult trees and seeds in the fragmented population of Tsoongiodendron odorum
生活史 Stage | 斑块 Stands | 样本 Sample size (N) | 等位基因数 No. of alleles per locus (A) | 等位基因丰富度 Allelic richness per locus (AR) | 观测杂合度 Observed heterozygosity (HO) | 预期杂合度 Expected heterozygosity (HE) | 近交系数 Inbreeding coefficient (FIS) |
---|---|---|---|---|---|---|---|
成株 Adults | NKS1 | 5 | 2.50 | 2.30 | 0.588 | 0.464 | -0.267* |
NKS2 | 13 | 3.50 | 2.39 | 0.450 | 0.454 | 0.009 | |
NKS3 | 20 | 4.25 | 2.58 | 0.621 | 0.547 | -0.134* | |
NKS4 | 16 | 4.89 | 2.76 | 0.610 | 0.575 | -0.061 | |
NKS5 | 7 | 3.88 | 2.68 | 0.542 | 0.568 | 0.047 | |
平均 Average | 12.2 | 3.80 | 2.54 | 0.569 | 0.532 | -0.070 | |
种子 Seeds | NKS1 | 60 | 3.63 | 2.38 | 0.652 | 0.496 | -0.315* |
NKS2 | 134 | 4.38 | 2.48 | 0.597 | 0.518 | -0.150* | |
NKS3 | 389 | 4.75 | 2.50 | 0.542 | 0.538 | -0.007 | |
NKS4 | 168 | 4.25 | 2.59 | 0.654 | 0.571 | -0.143* | |
NKS5 | 29 | 2.38 | 1.97 | 0.455 | 0.370 | -0.229* | |
平均 Average | 156 | 3.88 | 2.38 | 0.581 | 0.532 | -0.092 |
参数 Parameter | 估计值 Estimates |
---|---|
多位点异交率 Multilocus outcrossing rate (tm) | 1.000(0.000) |
单位点异交率 Singlelocus outcrossing rate (ts) | 0.997(0.002) |
双亲近交比例 Biparental inbreeding (tm-ts) | 0.003(0.002) |
多位点父本相关性 Multilocus correlation of paternity (rp(m)) | 0.229(0.043) |
单位点父本相关性 Singlelocus correlation of paternity (rp(s)) | 0.235(0.029) |
rp(s)- rp(m) | 0.007(0.020) |
有效花粉供体的数目 No. of effective pollen donors (Nep) | 4.4 |
Table 4 Mating system parameters for the fragmented population of Tsoongiodendron odorum. The values in the parentheses repr- ess-ent the standard errors.
参数 Parameter | 估计值 Estimates |
---|---|
多位点异交率 Multilocus outcrossing rate (tm) | 1.000(0.000) |
单位点异交率 Singlelocus outcrossing rate (ts) | 0.997(0.002) |
双亲近交比例 Biparental inbreeding (tm-ts) | 0.003(0.002) |
多位点父本相关性 Multilocus correlation of paternity (rp(m)) | 0.229(0.043) |
单位点父本相关性 Singlelocus correlation of paternity (rp(s)) | 0.235(0.029) |
rp(s)- rp(m) | 0.007(0.020) |
有效花粉供体的数目 No. of effective pollen donors (Nep) | 4.4 |
斑块 Stands | 多位点异交率 Multilocus outcrossing rate (tm) | 双亲近交比例 Biparental inbreeding (tm-ts) | 父本相关性 Correlation of paternity (rp) | 有效花粉供体数目 No. of effective pollen donors (Nep) | rp(s)- rp(m) |
---|---|---|---|---|---|
NKS1 | 1.000(0.000) | 0.000(0.000) | 0.034(0.018) | 29.4 | -0.003(0.016) |
NKS2 | 0.997(0.012) | 0.006(0.012) | 0.058(0.029) | 17.2 | 0.030(0.018) |
NKS3 | 0.994(0.016) | 0.007(0.037) | 0.233(0.016) | 4.3 | -0.009(0.018) |
NKS4 | 1.000(0.000) | 0.008(0.002) | 0.124(0.037) | 8.1 | -0.010(0.022) |
NKS5 | 1.000(0.000) | 0.002(0.000) | 0.063(0.035) | 15.9 | -0.033(0.033) |
Table 5 Mating system parameters for five stands of the fragmented population of Tsoongiodendron odorum. The values in the parentheses represent the standard errors.
斑块 Stands | 多位点异交率 Multilocus outcrossing rate (tm) | 双亲近交比例 Biparental inbreeding (tm-ts) | 父本相关性 Correlation of paternity (rp) | 有效花粉供体数目 No. of effective pollen donors (Nep) | rp(s)- rp(m) |
---|---|---|---|---|---|
NKS1 | 1.000(0.000) | 0.000(0.000) | 0.034(0.018) | 29.4 | -0.003(0.016) |
NKS2 | 0.997(0.012) | 0.006(0.012) | 0.058(0.029) | 17.2 | 0.030(0.018) |
NKS3 | 0.994(0.016) | 0.007(0.037) | 0.233(0.016) | 4.3 | -0.009(0.018) |
NKS4 | 1.000(0.000) | 0.008(0.002) | 0.124(0.037) | 8.1 | -0.010(0.022) |
NKS5 | 1.000(0.000) | 0.002(0.000) | 0.063(0.035) | 15.9 | -0.033(0.033) |
斑块 Stands | 家系 Families | 种子数 No. of seeds | 多位点异交率 Multilocus outcrossing rate (tm) | 双亲近交 Biparental inbreeding (tm-ts) | 父本相关性 Correlation of paternity (rp) | 有效花粉供体数目 No. of effective pollen donors (Nep) |
---|---|---|---|---|---|---|
NKS1 | N49 | 60 | 0.998(0.010) | 0.058(0.012) | 0.132(0.037) | 7.6 |
NKS2 | N17 | 30 | 0.986(0.000) | 0.067(0.008) | 0.131(0.035) | 7.6 |
N19 | 58 | 0.998(0.027) | 0.044(0.010) | 0.115(0.045) | 8.7 | |
N24 | 46 | 0.979(0.033) | 0.068(0.029) | 0.111(0.037) | 9.0 | |
NKS3 | N2 | 32 | 0.964(0.045) | 0.057(0.039) | 0.116(0.025) | 8.6 |
N4 | 59 | 0.998(0.004) | 0.066(0.012) | 0.081(0.027) | 12.3 | |
N6 | 59 | 0.997(0.000) | 0.050(0.008) | 0.195(0.080) | 5.1 | |
N9 | 60 | 0.998(0.010) | 0.053(0.014) | 0.100(0.041) | 10.0 | |
N31 | 60 | 0.996(0.002) | 0.057(0.010) | 0.237(0.108) | 4.2 | |
N33 | 60 | 0.925(0.073) | 0.067(0.061) | 0.141(0.049) | 7.1 | |
N35 | 59 | 0.885(0.088) | 0.000(0.071) | 0.219(0.049) | 4.6 | |
NKS4 | N39 | 63 | 0.999(0.000) | 0.047(0.008) | 0.220(0.078) | 4.5 |
N54 | 60 | 0.998(0.010) | 0.034(0.010) | 0.176(0.059) | 5.7 | |
N55 | 45 | 0.995(0.000) | 0.061(0.012) | 0.132(0.047) | 7.6 | |
NKS5 | N46 | 29 | 0.985(0.000) | 0.077(0.016) | 0.174(0.043) | 5.7 |
Table 6 Mating system parameters for 15 families of the fragmented population of Tsoongiodendron odorum, and the values in the parentheses represent the standard errors.
斑块 Stands | 家系 Families | 种子数 No. of seeds | 多位点异交率 Multilocus outcrossing rate (tm) | 双亲近交 Biparental inbreeding (tm-ts) | 父本相关性 Correlation of paternity (rp) | 有效花粉供体数目 No. of effective pollen donors (Nep) |
---|---|---|---|---|---|---|
NKS1 | N49 | 60 | 0.998(0.010) | 0.058(0.012) | 0.132(0.037) | 7.6 |
NKS2 | N17 | 30 | 0.986(0.000) | 0.067(0.008) | 0.131(0.035) | 7.6 |
N19 | 58 | 0.998(0.027) | 0.044(0.010) | 0.115(0.045) | 8.7 | |
N24 | 46 | 0.979(0.033) | 0.068(0.029) | 0.111(0.037) | 9.0 | |
NKS3 | N2 | 32 | 0.964(0.045) | 0.057(0.039) | 0.116(0.025) | 8.6 |
N4 | 59 | 0.998(0.004) | 0.066(0.012) | 0.081(0.027) | 12.3 | |
N6 | 59 | 0.997(0.000) | 0.050(0.008) | 0.195(0.080) | 5.1 | |
N9 | 60 | 0.998(0.010) | 0.053(0.014) | 0.100(0.041) | 10.0 | |
N31 | 60 | 0.996(0.002) | 0.057(0.010) | 0.237(0.108) | 4.2 | |
N33 | 60 | 0.925(0.073) | 0.067(0.061) | 0.141(0.049) | 7.1 | |
N35 | 59 | 0.885(0.088) | 0.000(0.071) | 0.219(0.049) | 4.6 | |
NKS4 | N39 | 63 | 0.999(0.000) | 0.047(0.008) | 0.220(0.078) | 4.5 |
N54 | 60 | 0.998(0.010) | 0.034(0.010) | 0.176(0.059) | 5.7 | |
N55 | 45 | 0.995(0.000) | 0.061(0.012) | 0.132(0.047) | 7.6 | |
NKS5 | N46 | 29 | 0.985(0.000) | 0.077(0.016) | 0.174(0.043) | 5.7 |
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