Biodiv Sci ›› 2014, Vol. 22 ›› Issue (4): 476-484. DOI: 10.3724/SP.J.1003.2014.14017
Special Issue: 物种形成与系统进化
• Original Papers • Previous Articles Next Articles
Min Xiong1,2, Shuang Tian1, Zhirong Zhang3, Dengmei Fan1, Zhiyong Zhang1,4,*()
Received:
2014-01-21
Accepted:
2014-05-20
Online:
2014-07-20
Published:
2014-07-24
Contact:
Zhang Zhiyong
Min Xiong, Shuang Tian, Zhirong Zhang, Dengmei Fan, Zhiyong Zhang. Population genetic structure and conservation units of Sinomanglietia glauca (Magnoliaceae)[J]. Biodiv Sci, 2014, 22(4): 476-484.
居群 Population | 采集地点 Location | 样品数 Sample size | 纬度 Latitude | 经度 Longitude | 海拔 Alt. (m) |
---|---|---|---|---|---|
云盘村 YPC | 湖南省永顺县朗溪乡云盘村 Yunpan Village, Langxi Town, Yongshun County, Hunan Province | 21 | 28°57.121′ N | 110°17.398′ E | 674 |
鲁家村 LJC | 湖南省永顺县小溪乡鲁家村 Lujia Village, Xiaoxi Town, Yongshun County, Hunan Province | 19 | 28°52.051′ N | 110°15.473′ E | 660 |
洪江村 HJC | 江西省宜春市洪江乡洪江村 Hongjiang Village, Hongjiang Town, Yichun, Jiangxi Province | 23 | 27°35.654′ N | 114°21.059′ E | 718 |
玉金山 YJS | 江西省宜春市洪江乡玉金山 Mt.Yujin, Hongjiang Town, Yichun, Jiangxi Province | 14 | 27°34.367′ N | 114°19.276′ E | 720 |
Table 1 Geographic locations and sample sizes of four wild populations of Sinomanglietia glauca
居群 Population | 采集地点 Location | 样品数 Sample size | 纬度 Latitude | 经度 Longitude | 海拔 Alt. (m) |
---|---|---|---|---|---|
云盘村 YPC | 湖南省永顺县朗溪乡云盘村 Yunpan Village, Langxi Town, Yongshun County, Hunan Province | 21 | 28°57.121′ N | 110°17.398′ E | 674 |
鲁家村 LJC | 湖南省永顺县小溪乡鲁家村 Lujia Village, Xiaoxi Town, Yongshun County, Hunan Province | 19 | 28°52.051′ N | 110°15.473′ E | 660 |
洪江村 HJC | 江西省宜春市洪江乡洪江村 Hongjiang Village, Hongjiang Town, Yichun, Jiangxi Province | 23 | 27°35.654′ N | 114°21.059′ E | 718 |
玉金山 YJS | 江西省宜春市洪江乡玉金山 Mt.Yujin, Hongjiang Town, Yichun, Jiangxi Province | 14 | 27°34.367′ N | 114°19.276′ E | 720 |
位点 Locus | 重复单元 Repeat motif | 引物 Primer Sequence (5’-3’) | 退火温度 Ta (℃) | 片段长度 Size range (bp) |
---|---|---|---|---|
STM0222* | (GA)26 | F: ATGGATGGACAGCGTAAA | 60.0 | 170 |
R: GGCCCATCTTGTTGTATGTA | ||||
STM0246* | (GA)33 | F: AAGCAAAGCCTCCTAGGTC | 58.0 | 186 |
R: TCTACGCCTAACAGGTCTGTC | ||||
M6D3** | (CT)22 | F: ACATGGATAGTCGTTGGATA | 50.0 | 131 |
R: ACCCCACTGAAGACAAACAT | ||||
M6D10** | (GA)14 | F: AAATTGTCGTCCAACCAGTT | 51.8 | 161 |
R: AAAGCAGCAAACAGGAAGAG | ||||
M10D8** | (GAA)6(GA)26 | F: AGCCCTCTATACACGCACACAT | 52.6 | 297 |
R: CGGAGCTACAAGGAGCAGAATA | ||||
M15D5** | (GA)16 | F: GATCGTTGCTGGCTCGC | 52.7 | 100 |
R: GCCGCCTGGATTATGAA |
Table 2 The six microsatellite locis screened out from Magnolia steliata and Magnolia obovata
位点 Locus | 重复单元 Repeat motif | 引物 Primer Sequence (5’-3’) | 退火温度 Ta (℃) | 片段长度 Size range (bp) |
---|---|---|---|---|
STM0222* | (GA)26 | F: ATGGATGGACAGCGTAAA | 60.0 | 170 |
R: GGCCCATCTTGTTGTATGTA | ||||
STM0246* | (GA)33 | F: AAGCAAAGCCTCCTAGGTC | 58.0 | 186 |
R: TCTACGCCTAACAGGTCTGTC | ||||
M6D3** | (CT)22 | F: ACATGGATAGTCGTTGGATA | 50.0 | 131 |
R: ACCCCACTGAAGACAAACAT | ||||
M6D10** | (GA)14 | F: AAATTGTCGTCCAACCAGTT | 51.8 | 161 |
R: AAAGCAGCAAACAGGAAGAG | ||||
M10D8** | (GAA)6(GA)26 | F: AGCCCTCTATACACGCACACAT | 52.6 | 297 |
R: CGGAGCTACAAGGAGCAGAATA | ||||
M15D5** | (GA)16 | F: GATCGTTGCTGGCTCGC | 52.7 | 100 |
R: GCCGCCTGGATTATGAA |
居群 Population | N | A | Ne | HO | HE | FIS | I | PPB(%) |
---|---|---|---|---|---|---|---|---|
云盘村 YPC | 21 | 1.385 | 1.351 | 0.344 | 0.182 | -0.889** | 0.255 | 38.46 |
鲁家村 LJC | 19 | 1.769 | 1.684 | 0.495 | 0.344 | -0.476** | 0.487 | 69.23 |
洪江乡 HJC | 23 | 3.308 | 2.319 | 0.501 | 0.522 | 0.062 | 0.910 | 100.00 |
玉金山 YJS | 14 | 2.923 | 2.246 | 0.462 | 0.511 | 0.136* | 0.850 | 100.00 |
平均 Mean | 19.3 | 2.604 | 1.991 | 0.451 | 0.423 | -0.292 | 0.696 | 76.92 |
Table 3 Summary of genetic statistics for Sinomanglietia glauca in wild populations
居群 Population | N | A | Ne | HO | HE | FIS | I | PPB(%) |
---|---|---|---|---|---|---|---|---|
云盘村 YPC | 21 | 1.385 | 1.351 | 0.344 | 0.182 | -0.889** | 0.255 | 38.46 |
鲁家村 LJC | 19 | 1.769 | 1.684 | 0.495 | 0.344 | -0.476** | 0.487 | 69.23 |
洪江乡 HJC | 23 | 3.308 | 2.319 | 0.501 | 0.522 | 0.062 | 0.910 | 100.00 |
玉金山 YJS | 14 | 2.923 | 2.246 | 0.462 | 0.511 | 0.136* | 0.850 | 100.00 |
平均 Mean | 19.3 | 2.604 | 1.991 | 0.451 | 0.423 | -0.292 | 0.696 | 76.92 |
Fig. 1 Results of STRUCTURE analysis based on all the individuals in four populations of Sinomanglietia glauca using 13 polymorphic microsatellite loci. (A) and (B) mean likelihood L(K) and ∆K value per K value with ten replications, respectively; (C) assignments proportion of each individuals from four sampled populations when K = 2 and 3.
居群 Pop. | 突变-漂变平衡检测模型 Mutation-drift test model | ||
---|---|---|---|
无限等位基因模型 IAM | 逐步突变模型 SMM | 两相模型 TPM | |
YPC | 0.03125* | 0.03125* | 0.03125* |
LJC | 0.00195** | 0.00195** | 0.00195** |
HJC | 0.00012*** | 0.04785* | 0.00024** |
YJS | 0.00305** | 0.12720 | 0.02148* |
Table 4 Probabilities from tests for population bottlenecks in four population of Sinomanglietia glauca under the three models (IAM、SMM and TPM)
居群 Pop. | 突变-漂变平衡检测模型 Mutation-drift test model | ||
---|---|---|---|
无限等位基因模型 IAM | 逐步突变模型 SMM | 两相模型 TPM | |
YPC | 0.03125* | 0.03125* | 0.03125* |
LJC | 0.00195** | 0.00195** | 0.00195** |
HJC | 0.00012*** | 0.04785* | 0.00024** |
YJS | 0.00305** | 0.12720 | 0.02148* |
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