Biodiv Sci ›› 2008, Vol. 16 ›› Issue (1): 91-95. DOI: 10.1360/biodiv.070239
Special Issue: 土壤生物与土壤健康
• Original article • Previous Articles Next Articles
Min Liu1,2, Lubin Li2, Kai Yang3, Jigang Han1, Baocheng Zhu1,4,*(), Zhenhua Peng2
Received:
2007-09-03
Accepted:
2007-11-15
Online:
2008-01-27
Published:
2008-01-27
Contact:
Baocheng Zhu
Min Liu, Lubin Li, Kai Yang, Jigang Han, Baocheng Zhu, Zhenhua Peng. Culturable bacterial diversity in rhizosphere ofBashania fangiana[J]. Biodiv Sci, 2008, 16(1): 91-95.
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URL: https://www.biodiversity-science.net/EN/10.1360/biodiv.070239
类群 Genus | 代表菌株(登录号) Representative isolate (accession no.) | 菌株数 No. of isolates in OTU* | 最相近菌种(登录号) Nearest type strain (accession no.) | 序列相似性 Similarity (%) |
---|---|---|---|---|
假单胞菌属 Pseudomonas | B34(EU169189) | 7 | Pseudomonas tolaasii (AF320989) | 98 |
B46(EU169146) | 3 | P. brenneri (AF268968) | 98 | |
B64(EU169192) | 1 | P. poae (AJ492829) | 97 | |
B61(EU169159) | 1 | P. trivialis (DQ885949) | 99 | |
B62(EU169158) | 1 | P. frederiksbergensis (AY785733) | 99 | |
B25(EU169168) | 1 | P. lini (AY035996) | 99 | |
B23(EU169169) | 1 | P. aurantiaca (AY271792) | 99 | |
B69(EU169163) | 8 | P. fluorescens (AF094730) | 99 | |
B5(EU169177) | 1 | P. grimontii (AF268029) | 99 | |
不动杆菌属 Acinetobacter | B38(EU169148) | 1 | Acinetobacter johnsonii (DQ257425) | 95 |
B33(EU169147) | 2 | A. johnsonii (DQ257425) | 98 | |
贪铜菌属 Cupriavidus | B47(EU169175) | 1 | Cupriavidus basilensis (AY860224) | 99 |
贪噬菌属 Variovorax | B54(EU169184) | 5 | Variovorax paradoxus (DQ241396) | 99 |
叶杆菌属 Phyllobacterium | B70(EU169181) | 3 | Phyllobacterium myrsinacearum (AJ011330) | 98 |
土地杆菌属 Pedobacter | B52(EU169155) | 1 | Pedobacter cryoconitis (AJ438170) | 99 |
微杆菌属 Microbacterium | B26(EU169182) | 1 | Microbacterium trichotecenolyticum(AB167383) | 99 |
B9(EU169183) | 1 | M. schleiferi (Y17237) | 91 | |
壤球菌属 Agrococcus | B16(EU169180) | 1 | Agrococcus jenensis (AM410679) | 99 |
微球菌属 Micrococcus | B7(EU169174) | 1 | Micrococcus indicus (AM158920) | 99 |
芽孢杆菌属 Bacillus | B1(EU169187) | 1 | Bacillus mycoides (EF210295) | 99 |
B31(EU169186) | 3 | B. weihenstephanensis (AM062685) | 99 | |
B72(EU169167) | 1 | B. cereus (AB244464) | 100 | |
B15(EU169176) | 1 | B. megaterium (AB271751) | 100 | |
B22(EU169170) | 1 | B. badius (AY803745) | 99 | |
B43(EU169188) | 1 | B. subtilis (EF656456) | 99 | |
B53(EU169154) | 1 | B. flexus (EF157301) | 99 |
Table 1 Similarity analysis of partial 16S rDNA sequences of isolates from Bashania fangianarhizosphere
类群 Genus | 代表菌株(登录号) Representative isolate (accession no.) | 菌株数 No. of isolates in OTU* | 最相近菌种(登录号) Nearest type strain (accession no.) | 序列相似性 Similarity (%) |
---|---|---|---|---|
假单胞菌属 Pseudomonas | B34(EU169189) | 7 | Pseudomonas tolaasii (AF320989) | 98 |
B46(EU169146) | 3 | P. brenneri (AF268968) | 98 | |
B64(EU169192) | 1 | P. poae (AJ492829) | 97 | |
B61(EU169159) | 1 | P. trivialis (DQ885949) | 99 | |
B62(EU169158) | 1 | P. frederiksbergensis (AY785733) | 99 | |
B25(EU169168) | 1 | P. lini (AY035996) | 99 | |
B23(EU169169) | 1 | P. aurantiaca (AY271792) | 99 | |
B69(EU169163) | 8 | P. fluorescens (AF094730) | 99 | |
B5(EU169177) | 1 | P. grimontii (AF268029) | 99 | |
不动杆菌属 Acinetobacter | B38(EU169148) | 1 | Acinetobacter johnsonii (DQ257425) | 95 |
B33(EU169147) | 2 | A. johnsonii (DQ257425) | 98 | |
贪铜菌属 Cupriavidus | B47(EU169175) | 1 | Cupriavidus basilensis (AY860224) | 99 |
贪噬菌属 Variovorax | B54(EU169184) | 5 | Variovorax paradoxus (DQ241396) | 99 |
叶杆菌属 Phyllobacterium | B70(EU169181) | 3 | Phyllobacterium myrsinacearum (AJ011330) | 98 |
土地杆菌属 Pedobacter | B52(EU169155) | 1 | Pedobacter cryoconitis (AJ438170) | 99 |
微杆菌属 Microbacterium | B26(EU169182) | 1 | Microbacterium trichotecenolyticum(AB167383) | 99 |
B9(EU169183) | 1 | M. schleiferi (Y17237) | 91 | |
壤球菌属 Agrococcus | B16(EU169180) | 1 | Agrococcus jenensis (AM410679) | 99 |
微球菌属 Micrococcus | B7(EU169174) | 1 | Micrococcus indicus (AM158920) | 99 |
芽孢杆菌属 Bacillus | B1(EU169187) | 1 | Bacillus mycoides (EF210295) | 99 |
B31(EU169186) | 3 | B. weihenstephanensis (AM062685) | 99 | |
B72(EU169167) | 1 | B. cereus (AB244464) | 100 | |
B15(EU169176) | 1 | B. megaterium (AB271751) | 100 | |
B22(EU169170) | 1 | B. badius (AY803745) | 99 | |
B43(EU169188) | 1 | B. subtilis (EF656456) | 99 | |
B53(EU169154) | 1 | B. flexus (EF157301) | 99 |
Fig. 1 Neighbor-joining tree based on partial and aligned 16S rDNA sequences of 26 OTUs isolated from Bashania fangiana rhizosphere and their nearest type strains. GenBank accession numbers are given in parentheses. The number of isolates in one OTU is presented in brackets. Bootstrap values (percent) calculated from 1,000 resamplings are shown at branch nodes.
[1] | Chen HK (陈华癸) (1981) Soil Microbiology 土壤微生物学). Shanghai Science Press, Shanghai. (in Chinese) |
[2] | Chen M (陈梦) (2003) Discussion on the theory of ecosystem and biodiversity. Journal of Nanjing Forestry University (南京林业大学学报), 25,1370-1374. (in Chinese with English abstract) |
[3] | Courchesne F, Gobran GR (1997) Mineralogical variations of bulk and rhizosphere soils from a Norway spruce stand. Soil Science Society of America Journal, 61,1245-1249. |
[4] | Harris PJ (1988) The microbial population of the soil. In:Russell’s Soil Conditions and Plant Growth (ed. Wild A), pp.449-471. Longman Scientific and Technical, Essex, UK. |
[5] | Kim SB, Yoon JH, Kim H, Lee ST, Park YH, Goodfellow M (1995) A phylogenetic analysis of the genus Saccharomo- nospora conducted with 16S rRNA gene sequences . Intern- ational Journal of Systematic Bacteriology, 45,351-356. |
[6] | Kimura M (1980) A simple method for estimating evolutionary rates base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution, 16,111-120. |
[7] | Lechner S, Mayr R, Francis KP, Prqb BM, Kaplan T, Wiebner-Gunke E, Stewart GSAB, Scherer S (1998) Bacillus weihenstephanensis sp. nov. is a new psychrotolerant species of the Bacillus cereus group . International Journal of Systematic Bacteriology, 48,1373-1382. |
[8] | Li FD (李阜棣), Hu ZJ (胡正嘉) (2003) Microbiology 微生物学). China Agricultural Press, Beijing. (in Chinese) |
[9] | Margesin R, Sproer C, Schumann P, Schinner F (2003) Pedobacter cryoconitis sp. nov., a facultative psychrophile from alpine glacier cryoconite . International Journal of Syste- matic and Evolutionary Microbiology, 53,1291-1296. |
[10] | Qi ZM (齐泽民), Yang WQ (杨万勤) (2006) Microbial quantity and enzyme activity in Fargesia denudate rhizosphere soil of western Sichuan . Chinese Journal of Ecology (生态学杂志), 25,1370-1374. (in Chinese with English abstract) |
[11] | Qin ZS (秦自生), Cai XS (蔡绪慎), Huang JY (黄金燕) (1989a) Seed characteristics and natural regeneration of arrow bamboo (Bashania fangiana). Journal of Bamboo Research (竹子研究汇刊), 8,1-12. (in Chinese with English abstract) |
[12] | Qin ZS (秦自生), Zhang Y (张焱), Ma HY (马恒银) (1989b) A study on the biomass and the productivity of Bashania fangiana. Journal of Sichuan Teachers College (四川师范学院学报), 10,209-213. (in Chinese with English abstract) |
[13] | Rainey FA, Ward-Rainey N, Kroppenstedt RM, Stackebrandt E (1996) The genus Nocardiopsis represents a phylogenetic- ally coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsiaceae fam. nov. International Journal of Systematic Bacteriology, 46,28-96. |
[14] | Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution, 4,406-425. |
[15] | Stackebrandt E, Ludwig W, Fox GE (1985) 16S ribosomal RNA oligonucleotide cataloging. Methods in Microbiology, 18,75-107. |
[16] | Suzuki MT, Rappe MS, Haimberger ZW, Winfield H, Adair N, Strobel J, Giovannoni S (1997) Bacterial diversity among small-subunit rRNA gene clones and cellular isolates from the same seawater sample. Applied and Environmental Microbiology, 63,983-989. |
[17] | Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research, 24,4876-4882. |
[18] | Yi TP (易同培) (1997) Bamboo Floral of Sichuan (四川竹类植物志). China Forestry Publishing House, Beijing. (in Chinese) |
[19] | Zhou SQ (周世强) (1994) Study on effect of rejuvenation technique on population density and above-ground biomass of Bashania fangiana. Journal of Bamboo Research (竹子研究汇刊), 13(2),26-36. (in Chinese with English abstract) |
[20] | Zhou SQ (周世强), Huang JY (黄金燕) (1998) A study of arrow bamboo ( Bashania fangiana) forest in Wolong Nature Reserve . Journal of Sichuan Forestry Science and Technology (四川林业科技), 19(2),1-6. (in Chinese with English abstract) |
[21] | Zhou SQ (周世强), Huang JY (黄金燕) (2002) A study on the growth behavior of young arrow bamboo ( Bashania fabri) clonal population after natural regeneration . Journal of Sichuan Forestry Science and Technology (四川林业科技), 23(2),29-32. (in Chinese with English abstract) |
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