Biodiv Sci ›› 2008, Vol. 16 ›› Issue (1): 91-95.DOI: 10.1360/biodiv.070239
• Original article • Previous Articles Next Articles
Min Liu1,2, Lubin Li2, Kai Yang3, Jigang Han1, Baocheng Zhu1,4,*(
), Zhenhua Peng2
Received:2007-09-03
Accepted:2007-11-15
Online:2008-01-27
Published:2008-01-27
Contact:
Baocheng Zhu
Min Liu, Lubin Li, Kai Yang, Jigang Han, Baocheng Zhu, Zhenhua Peng. Culturable bacterial diversity in rhizosphere ofBashania fangiana[J]. Biodiv Sci, 2008, 16(1): 91-95.
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URL: https://www.biodiversity-science.net/EN/10.1360/biodiv.070239
| 类群 Genus | 代表菌株(登录号) Representative isolate (accession no.) | 菌株数 No. of isolates in OTU* | 最相近菌种(登录号) Nearest type strain (accession no.) | 序列相似性 Similarity (%) |
|---|---|---|---|---|
| 假单胞菌属 Pseudomonas | B34(EU169189) | 7 | Pseudomonas tolaasii (AF320989) | 98 |
| B46(EU169146) | 3 | P. brenneri (AF268968) | 98 | |
| B64(EU169192) | 1 | P. poae (AJ492829) | 97 | |
| B61(EU169159) | 1 | P. trivialis (DQ885949) | 99 | |
| B62(EU169158) | 1 | P. frederiksbergensis (AY785733) | 99 | |
| B25(EU169168) | 1 | P. lini (AY035996) | 99 | |
| B23(EU169169) | 1 | P. aurantiaca (AY271792) | 99 | |
| B69(EU169163) | 8 | P. fluorescens (AF094730) | 99 | |
| B5(EU169177) | 1 | P. grimontii (AF268029) | 99 | |
| 不动杆菌属 Acinetobacter | B38(EU169148) | 1 | Acinetobacter johnsonii (DQ257425) | 95 |
| B33(EU169147) | 2 | A. johnsonii (DQ257425) | 98 | |
| 贪铜菌属 Cupriavidus | B47(EU169175) | 1 | Cupriavidus basilensis (AY860224) | 99 |
| 贪噬菌属 Variovorax | B54(EU169184) | 5 | Variovorax paradoxus (DQ241396) | 99 |
| 叶杆菌属 Phyllobacterium | B70(EU169181) | 3 | Phyllobacterium myrsinacearum (AJ011330) | 98 |
| 土地杆菌属 Pedobacter | B52(EU169155) | 1 | Pedobacter cryoconitis (AJ438170) | 99 |
| 微杆菌属 Microbacterium | B26(EU169182) | 1 | Microbacterium trichotecenolyticum(AB167383) | 99 |
| B9(EU169183) | 1 | M. schleiferi (Y17237) | 91 | |
| 壤球菌属 Agrococcus | B16(EU169180) | 1 | Agrococcus jenensis (AM410679) | 99 |
| 微球菌属 Micrococcus | B7(EU169174) | 1 | Micrococcus indicus (AM158920) | 99 |
| 芽孢杆菌属 Bacillus | B1(EU169187) | 1 | Bacillus mycoides (EF210295) | 99 |
| B31(EU169186) | 3 | B. weihenstephanensis (AM062685) | 99 | |
| B72(EU169167) | 1 | B. cereus (AB244464) | 100 | |
| B15(EU169176) | 1 | B. megaterium (AB271751) | 100 | |
| B22(EU169170) | 1 | B. badius (AY803745) | 99 | |
| B43(EU169188) | 1 | B. subtilis (EF656456) | 99 | |
| B53(EU169154) | 1 | B. flexus (EF157301) | 99 |
Table 1 Similarity analysis of partial 16S rDNA sequences of isolates from Bashania fangianarhizosphere
| 类群 Genus | 代表菌株(登录号) Representative isolate (accession no.) | 菌株数 No. of isolates in OTU* | 最相近菌种(登录号) Nearest type strain (accession no.) | 序列相似性 Similarity (%) |
|---|---|---|---|---|
| 假单胞菌属 Pseudomonas | B34(EU169189) | 7 | Pseudomonas tolaasii (AF320989) | 98 |
| B46(EU169146) | 3 | P. brenneri (AF268968) | 98 | |
| B64(EU169192) | 1 | P. poae (AJ492829) | 97 | |
| B61(EU169159) | 1 | P. trivialis (DQ885949) | 99 | |
| B62(EU169158) | 1 | P. frederiksbergensis (AY785733) | 99 | |
| B25(EU169168) | 1 | P. lini (AY035996) | 99 | |
| B23(EU169169) | 1 | P. aurantiaca (AY271792) | 99 | |
| B69(EU169163) | 8 | P. fluorescens (AF094730) | 99 | |
| B5(EU169177) | 1 | P. grimontii (AF268029) | 99 | |
| 不动杆菌属 Acinetobacter | B38(EU169148) | 1 | Acinetobacter johnsonii (DQ257425) | 95 |
| B33(EU169147) | 2 | A. johnsonii (DQ257425) | 98 | |
| 贪铜菌属 Cupriavidus | B47(EU169175) | 1 | Cupriavidus basilensis (AY860224) | 99 |
| 贪噬菌属 Variovorax | B54(EU169184) | 5 | Variovorax paradoxus (DQ241396) | 99 |
| 叶杆菌属 Phyllobacterium | B70(EU169181) | 3 | Phyllobacterium myrsinacearum (AJ011330) | 98 |
| 土地杆菌属 Pedobacter | B52(EU169155) | 1 | Pedobacter cryoconitis (AJ438170) | 99 |
| 微杆菌属 Microbacterium | B26(EU169182) | 1 | Microbacterium trichotecenolyticum(AB167383) | 99 |
| B9(EU169183) | 1 | M. schleiferi (Y17237) | 91 | |
| 壤球菌属 Agrococcus | B16(EU169180) | 1 | Agrococcus jenensis (AM410679) | 99 |
| 微球菌属 Micrococcus | B7(EU169174) | 1 | Micrococcus indicus (AM158920) | 99 |
| 芽孢杆菌属 Bacillus | B1(EU169187) | 1 | Bacillus mycoides (EF210295) | 99 |
| B31(EU169186) | 3 | B. weihenstephanensis (AM062685) | 99 | |
| B72(EU169167) | 1 | B. cereus (AB244464) | 100 | |
| B15(EU169176) | 1 | B. megaterium (AB271751) | 100 | |
| B22(EU169170) | 1 | B. badius (AY803745) | 99 | |
| B43(EU169188) | 1 | B. subtilis (EF656456) | 99 | |
| B53(EU169154) | 1 | B. flexus (EF157301) | 99 |
Fig. 1 Neighbor-joining tree based on partial and aligned 16S rDNA sequences of 26 OTUs isolated from Bashania fangiana rhizosphere and their nearest type strains. GenBank accession numbers are given in parentheses. The number of isolates in one OTU is presented in brackets. Bootstrap values (percent) calculated from 1,000 resamplings are shown at branch nodes.
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