Much attention has been paid to the studies of aboveground biological processes in terrestrial ecosystems. Mutual feedbacks between above- and belowground processes have recently become a central interest of ecologists. Soil biota, the most active portion in belowground systems, play crucial roles in processes such as nutrient cycling and energy transformation in terrestrial ecosystems. Soil biota, driven by resource heterogeneity, nutrient availability, and abiotic conditions, could impose direct or indirect and positive or negative feedbacks on aboveground biology by altering rates of nutrient mineralization and the spatial distribution of nutrient availability, rhizospheric hormones and the soil environment. We analyze spatial and temporal variations in soil functional diversity, soil foodweb structure, and the above- and belowground interactions across a wide range of terrestrial ecosystems. These analyses will improve our understanding of belowground ecological processes, and inform the management of ecosystem stability and biodiversity conservation in response to global changes.
Arbuscular mycorrhizal (AM) fungi are obligate symbiotic endophytes which have not been cultured in vitro. The life cycle of AM fungi can be completed only when the mycorrhiza forms between the fungi and plant roots. There are more than 200 genetically-diverse species of AM fungi belonging to Glomeromycota in the Kingdom Fungi. It is well documented that surprisingly high genetic variability exists between and within species, and even in a single spore of AM fungi. We summarize recent advances in the study of AM fungal diversity, discuss some related problems, and introduce present and future research trends.
In order to study the effect of plant community composition on soil microbial communities in a typical Inner Mongolian grassland, the abundance and community structure of bacteria and fungi in bulk soils under different plant functional groups and in soils from the rhizosphere of different grass species were analyzed using real-time PCR and automated ribosomal intergenic spacer analysis (ARISA) under plant functional group removal treatments. Our results indicated that changes in plant functional group affect bacterial abundance, but not fungal abundance or bacterial/fungal community structure in bulk soil. The abundance of bacteria and fungi in the rhizosphere soil varied with plant species. Cluster analysis revealed that community structure of bacteria and fungi also varied among plant species in the rhizosphere soil but not in the bulk soil. which was more evident for bacteria. Our results point to the ways in which plant species can influence soil microbial and fungal communities through the action of their roots.
Ectomycorrhiza (ECM) are symbionts formed between soil fungi and plant root systems, in which the fungus exchanges soil-derived nutrients for carbohydrates obtained from the host plant. As an important component of terrestrial ecosystems, ECM fungi can play an essential role in biodiversity maintenance and plant community succession. Understanding the distribution pattern and maintenance of ECM fungal diversity is therefore critical to the study of biodiversity and ecosystem functioning. An analysis of results of recent research indicates that ECM fungal diversity increases with increasing latitude, i.e. from tropical to subtropical and temperate regions. The role of dispersal in ECM fungal distribution is dependent on spatial scale. Thus, it has been found to be weak across global and local scales, but strong at regional and small scales. At the local scale, its influence has also been shown to be host-dominant dependent; thus, it is important in host non-dominant ecosystems, but not in host dominant ecosystems. Selection by plant, animal, microbe and abiotic factors can also affect the distribution pattern of ECM fungi, according to studies of temperate ecosystems. In contrast, studies of tropical ecosystems indicate that selection on ECM fungal distribution can be either strong or weak. ECM fungal diversity is also influenced by plant diversity and productivity. The plant diversity hypothesis at host genus-level fits well with ECM fungal diversity in temperate, subtropical and tropical forest ecosystems; in contrast, the productivity diversity hypothesis is only supported by some studies in temperate forest ecosystems. We propose that future studies should focus on the distribution pattern, maintenance mechanism and ecosystem function of ECM fungal diversity at a global scale, taking account of scenarios of global climate change.
Sphaerophysa salsula is a highly nutritive and drought-tolerant perennial grass distributed in mid-Asia and northwestern China. This legume plant is highly prized for the revegetation of drought and high alkali soils. Our objective was to better understand the diversity and phylogeny of rhizobia collected from nodules of Sphaerophsa salsula in different regions of northwestern China. We estimated genetic diversity using 16S rDNA PCR-RFLP and 16S rDNA sequencing. Nine genotypes were tested from 57 strains. 16S rDNA sequencing revealed that these rhizobial strains belonged to the following genera: Mesorhizobium, Rhizobium, Sinorhizobium, Agrobacterium, Phyllobacterium and Shinella kummerowiae. The Jaccard similarity coefficient of the strains from Yinchuan was low while the strains isolated from Minle and Linze had rich diversity, with Simpson indices of 0.826 and 0.710, respectively, and Shannon-Wiener indices of 1.831 and 1.530, respectively. This study provides basic information for the phylogeny of rhizobia in northwestern China.
To determine the diversity of arbuscular mycorrhizal (AM) fungi in the rhizosphere of tea plant (Camellia sinensis) in Laoshan region, Shandong Province, we selected and sampled 12 representative tea gardens. Soil samples were collected from these gardens in September 2007. Spores of AM fungi were identified to reveal the species richness, frequency, spore density, relative abundance, importance value and Shannon-Wiener indices of AM fungi. Species diversity and composition of AM fungal community were also compared among the 12 tea gardens. A total of 22 species belonging to three genera were identified according to the morphological characteristics of the spores isolated from soil samples collected using wet-sieving techniques. The relative abundance of the genus Acaulosporawas the highest, followed by Glomus. Soil samples from Xiaowang Village Tea Garden showed the highest spore density, while Gaojia Village soils were the lowest. Species richness in soil samples from Changjiacun Village and Sangyuan Village Tea Garden was significantly higher than that in other tea gardens. Species diversity was highest in the Changjiacun Village Tea Garden. Acaulospora laeviswas the dominant species in Beilao Tea Garden, Wanglijiang Tea Garden, Yingshanchun Tea Garden, Wanlijiang Organic Tea Garden, Changjia Village, and Sangyuan Village Tea Garden, while Acaulospora undulata was the most common species in Gaojiacun Village and Wanlaike Tea Garden. Glomus occultum occurred most frequently in Yingshanchun Tea Garden, Xiaowang Village and Wanlaike Tea Garden. Relationships between environmental factors and AM fungi spore density in the Laoshan Tea region were determined using Canonical Correspondence Analysis, and their relative degree of impact on density was as follows: available phosphorus content>soil organic matter content>tree age>soil available nitrogen content>soil pH>soil available potassium content.
To elucidate the diversity of arbuscular mycorrhizal (AM) fungi associated with the common desert plant Artemisia ordosica, we sampled, in April 2007, the following four representative sites in the Mu Us Sandland and Tengger Desert regions: Yulin Psammophyte Garden (Yulin), Yanchi Desert Shrub Garden (Yanchi), Ordos Sandland Ecological Research Station (Research Station), and Shapotou Desert Research and Experiment Station (Shapotou). We collected soil samples from the rhizosphere ofA. ordosica and divided them into five depth intervals, each 10 cm, to 50 cm depth. A total of 28 AM fungal species from four genera were isolated. Of these, 16 species belonged to Glomus, 7 to Acaulospora, 4 to Scutellospora and 1 toDiversispora. Glomus mosseae was the dominant species. Acaulospora bireticulata andG. reticulatum were common species (>25% frequency of occurence) andG. constrictum was rare species (≤25% frequency of occurence) at the four sampling sites.Glomus geosporum was found only in Yanchi, G. melanosporum only in Yulin and A. mellea, A. lacunosa, G. coremioides and G. magnicaule occurred only in Research Station. Richness of AM species was highest in Yanchi and Research Station and spore density was highest in Yulin. Species richness and spore density were the lowest in Shapotou. Generally, spore density, isolation frequency, relative abundance and importance value followed the trend Glomus > Acaulospora > Paraglomus > Diversispora. Our results are the first to assess the considerable diversity of arbuscular mycorrhizal fungi found in association with Artemisia ordosica. Further research should concentrate on understanding the dynamics of these relationships.
In order to understand the effects of seasonal freeze-thaw on the structure of soil macro-faunal community, we conducted a field experiment in three representative fir (Abies faxoniana) forests at different elevations in the subalpine/alpine forests of western Sichuan. The composition, abundance, and diversity of soil macro-faunal community were investigated in winter (including onset of soil freezing period, soil frozen period, and soil thawing period) and growing season of vegetation from November 2008 to October 2009. A total of 10,763 individuals were collected and, according to preliminary identification, they belonged to 91 families. There were obvious differences in soil macro-faunal community structure between winter and growing season. The dominant groups in winter consisted of Hesperinidae and Sciaridae, while the ordinary groups consisted of Tipulidae, Scydmaenidae and Ceratopogonidae. However, the dominant groups in growing season consisted of Formicidae, Staphylinidae, Hesperinidae and Spirostreptida, and the ordinary groups consisted of Lithobiomorpha, Projapygidae and Muscidae. Moreover, individual density, number of taxonomic groups, and Shannon-Wiener index of soil macro-faunal community tended to decrease and then increase to a distinct peak in the soil thawing period as seasonal freeze-thaw proceeded in winter. In addition, saprozoic species dominated the functional groups in winter, and the proportion of predatory and phytophagous soil macro-faunal species increased in late soil thawing (April 25) and early growing season (May 25). Our results suggest that seasonal freeze-thaw and freezing events significantly influence the structure of soil faunal community, and that changes in the soil faunal community during the transitional period between late soil thawing and the early growing season may have important influences on ecological processes.
In order to understand the diversity of cultivable rhizobacteria associated with Dongxiang wild rice at different growth stages and to discover new species and strains of plant growth-promoting rhizobacteria (PGPR), we isolated 118 bacteria strains with different colony morphology using the dilution plate counting method and tested their plant growth promoting activities (PGPA) in May, August and November 2009. Phylogenetic analysis based on partial 16S rRNA sequences indicated that 118 strains clustered into 11 genera, and the dominant bacteria genera were Bacillus, Pantoea and Sphingomonas. The rhizobacteria displayed a high diversity with Shannon-Wiener indices of 2.037-2.741. PGPA analyses indicated that most strains displayed PGPR effects, including nitrogen-fixation, phosphorus-solubilization, IAA-production and siderophore-secretion, and that the dominant PGPR was Pantoea. Additionally, we found that the total amount and PGPA of cultivable rhizobacteria began to increase gradually at seedling stage of Dongxiang wild rice, and reached its peak at heading stage, then decreased at grain filling stage. Our results show that the diversity of bacterial communities in the rhizosphere soil of Dongxiang wild rice is abundant, and that the rich rhizobacteria may be a fascinating PGPR reservoir.
Soil fauna were very important for the ecological reconstruction of mine tailings. We investigated community characteristics of soil fauna at two sites, including reclamated copper-mine-tailings (RCMT) and suburb forest land of reclamated copper-mine-tailings (SFL) in Tongling City to test and illustrate the value of soil fauna for mitigating the impacts of heavy metal pollution. In the spring of 2011, we established four transects (150 m) at the two sites and collected soil samples of macro-, meso- and micro- soil fauna from four depths (0-5 cm, 5-10 cm, 10-15 cm, 15-20 cm) at 13 30 cm× 30 cm sampling quadrats. Our results showed that at RCMT, the Acarina, Collembola and Nematoda were dominant groups; the Formicidae, Coleoptera larvae, Oligochaeta, Diptera larvae and Diplura were frequent groups; and the additional 16 groups were less commonly encountered. While at SFL the Collembola and Acarina were dominant groups and the Nematoda and Oligochaeta were frequent groups. Overall abundance of soil fauna at RCMT were significantly less than that of SFL (F=20.65, P<0.01), and number of faunal groups were lower at RCMT (F=5.88, P<0.05). We did not find a significant difference between the density of macro-soil fauna at RCMT and SFL, but found that the density of meso- and micro- soil fauna at RCMT was significantly lower than that of SFL (F=29.99, P<0.01). The Shannon-Wiener diversity index (H) at RCMT was higher than that of SFL (F=24.06, P<0.01), but DG diversity index was lower at RCMT compared to SFL (F=4.75, P<0.05). There was evident surface aggregation of soil fauna at RCMT, especially in the differences between the first layer and the other layers of the soil profile (Find.=17.80, Fgro.=33.33, P<0.01). Redundancy analysis indicated that soil macro-, dry-type, wet-type meso- and micro-fauna at different habitats were differentially affected by various environmental factors. At reclaimed land with higher copper concentrations, we found a higher greater number of Formicidae and Coleoptera and lower numbers of Collembola and Acarina adults. Our study suggests that the key of soil fauna recovery at reclaimed lands is to reduce the content of Cu and improve the microhabitat conditions.
Litter decomposition is an important ecosystem function, and is an indispensable process for carbon and nutrient cycling. Litter decomposition is influenced by many factors, especially soil microbial communities, which are subject to their corresponding plant communities. It is necessary to study changes in soil microbial communities during litter decomposition and how these changes respond to plant diversity in corresponding forest communities to understand the mechanisms of decomposition. In the present study, we investigated these changes and responses using a litter bag method. Our results showed: (1) After 183 days of litter bag placement, microbial diversity decreased, and there was a negative correlation between plant species diversity and microbial diversity; (2) Soil microbial communities varied before and after the placement of plant litter bags. In particular the PLFAs of fungi and bacteria after the placement of litter bags were much higher than those before the placement of litter bags; (3) Topography was the most important factor correlated with the soil microbial community, and explained 29.55% of the variation of microbial communities. In contrast, litter quality and plant diversity explained 15.39% and 8.45%, respectively, and the interaction of the three factors explained 2.97% of the variation of the microbial communities. In conclusion, we find plant diversity plays a less important role than topography in determining soil microbial diversity, and litter quality influences soil microbial communities during litter decomposition.
The properties of red soil may change over time when paddy fields are developed on what was previously dry land. The effect of rice cultivation duration on soil invertebrates is unknown. Five chronosequences of rice cultivation (1, 10, 20, 50 and 100 years) were selected to investigate the temporal changes of soil microbiological properties and nematode assemblages. The results showed that soil microbial properties (microbial biomass C, microbial biomass N, basal respiration), nutrient availability (mineral N and P), nematode abundance and richness of nematode genera generally increased with the duration of rice cultivation. Notably, most soil measurements peaked after 50 years of cultivation (P<0.05) and decreased slightly after 100 years. As the period of rice cultivation increased, the proportion of nematode herbivores rose significantly (P< 0.05), while that of predators/omnivores slightly declined. Nematode Channel Ratio (NCR) also increased with cultivation duration (P< 0.05), indicating that the bacterial energy channel was more dominant in old rice fields when compared to those cultivated for a shorter period. Other ecological indices of nematode assemblage such as maturity index and structure index, did not reveal consistent trends with an increased period of rice cultivation. In summary, a change in land use from dry land to paddy fields promotes soil microbial properties and nematode assemblages in the first few decades, which then become stable after 50 years of cultivation.
Cold-adapted bacteria and archaea are widely distributed in cold environments on Earth, such as permafrost, cold soils and deserts, glaciers, lakes, sea ice in the Arctic, Antarctic and high mountains, as well as the deep sea, ice caves and the atmospheric stratosphere etc. Cold-adapted organisms inhabiting these environments exhibit rich diversity. Studies on the biogeography of psychrophiles will enable us to understand their biodiversity, distribution and origins. Due to long-term living in cold regions, cold-adapted bacteria and archeae have developed specific physiological mechanisms of adaptation to cold environments. These mechanisms include: regulating the fluidity of the cytoplasmic membrane through adjusting the composition of membrane lipids; achieving low-temperature protection through compatibility solute, antifreeze proteins, ice-binding proteins, ice-nucleation proteins and anti-nucleating proteins; production of heat-shock and cold- shock proteins, cold acclimation protein and DEAD-box RNA helicase at low temperatures; production of cold-active enzymes; increasing energy generation and conservation. With the rapid development of sequencing technology, various omics-based approaches have been used to reveal cold-adaptive mechanisms of psychrophiles at the genomic level.
Sponsors
Biodiversity Committee, CAS
Botanical Society of China
Institute of Botany, CAS
Institute of Zoology, CAS
Institute of Microbiology, CAS
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