Biodiversity Science ›› 2013, Vol. 21 ›› Issue (4): 468-480.doi: 10.3724/SP.J.1003.2013.13040

Special Issue: Microbes Diversity

• Orginal Article • Previous Article     Next Article

Biodiversity and cold adaptive mechanisms of psychrophiles

Yuhua Xin, Yuguang Zhou, Xiuzhu Dong*()   

  1. Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101
  • Received:2013-02-05 Accepted:2013-07-01 Online:2013-07-29
  • Dong Xiuzhu E-mail:dongxz@sun.im.ac.cn

Cold-adapted bacteria and archaea are widely distributed in cold environments on Earth, such as permafrost, cold soils and deserts, glaciers, lakes, sea ice in the Arctic, Antarctic and high mountains, as well as the deep sea, ice caves and the atmospheric stratosphere etc. Cold-adapted organisms inhabiting these environments exhibit rich diversity. Studies on the biogeography of psychrophiles will enable us to understand their biodiversity, distribution and origins. Due to long-term living in cold regions, cold-adapted bacteria and archeae have developed specific physiological mechanisms of adaptation to cold environments. These mechanisms include: regulating the fluidity of the cytoplasmic membrane through adjusting the composition of membrane lipids; achieving low-temperature protection through compatibility solute, antifreeze proteins, ice-binding proteins, ice-nucleation proteins and anti-nucleating proteins; production of heat-shock and cold- shock proteins, cold acclimation protein and DEAD-box RNA helicase at low temperatures; production of cold-active enzymes; increasing energy generation and conservation. With the rapid development of sequencing technology, various omics-based approaches have been used to reveal cold-adaptive mechanisms of psychrophiles at the genomic level.

Key words: psychrophiles, biodiversity, biogeography, cold-adaptive mechanisms

Appendix I

Main phyla of the psychrophiles in cold environments"

样品来源
Site and sample
类群 Group 参考文献
Reference
科以上类群 Group above family 属及种 Genus and species
冰川冰芯及沉积物
南极
Vostok湖5G冰芯 α-Proteobacteria, Actinobacteria, Firmicutes D’Elia et al., 2008
Vostok湖3593米冰芯 α-和β-Proteobacteria, HGC, LGC及CFB类群 Brachybacteria, Methylobacterium, Paenibacillus, Sphingomonas Christner et al., 2001
Dronning Maud Land浅层冰芯 Methylobacterium, Brevundimonas, Paenibacillus, Bacillus, Micrococcus, Bacillus aryabhattai Antonya et al., 2012
Canada 冰川冰尘穴 Acidobacterium, Actinobacteria, Cyanobacteria, Cytophagales, Gemmimonas, Planctomycetes, Proteobacteria, Verrucomicrobia Christner et al., 2003a
Lower Wright冰川沉积物 Proteobacteria, Firmicutes, Acidobacteria, Cyanobacteria, Bacteroidetes, Planctomycetes, candidate division OP10 Stibal et al., 2012
Bratina岛冰川融水湖沉积物 α-, β-和γ-Proteobacteria, CFB类群, Spirochaetaceae, Actinobacteria, Crenarchaeota Sjöling & Cowan, 2003
北极
GISP2冰芯 α-, β-和γ-Proteobacteria, HGC, LGC及CFB类群, Methylobacterium, Rhodococcus, Mycobacterium, Sphingomonas, Arthrobacter, Frigoribacterium, Thermus及厌氧的Bacteroides, Eubacterium, Clostridium Sheridan et al., 2003; Miteva et al., 2004; Tung et al., 2006
格陵兰岛Russell冰川 Proteobacteria Stibal et al., 2012
青藏高原
马兰冰川冰芯 α-, β-和γ-Proteobacteria, CFB类群, Acinetobacter, HGC, LGC和其他类群细菌 马晓军, 2004; 向述荣等, 2004; Zhang et al., 2001
慕士塔格冰川冰芯 α-和γ-Proteobacteria, CFB类群, HGC Acinetobacter, Cryobacterium, Flavobacterium Xiang et al., 2005
南极表层雪和常年积雪 Deinococcus-like Carpenter et al., 2000
珠穆朗玛峰地区果曲、东绒布、扎当和帕隆4号冰川 α-, β-和γ-Proteobacteria, Actinobacteria, Bacteroidetes Sphingomonas, Polaromonas, Acinetobacter, Hymenobacter, Acinetobacter, Enterobacter, Rhizobium, Actinobacteria中的11个属 Liu et al., 2009b
Yala冰川的表层雪 Cyanobacteria, α-Proteobacteria, Firmicutes, CFB类群 Liu et al., 2011
日本立山(Tateyama Mountain)五月雪坑 Cryobacterium psychrophilum, Variovorax paradoxus, Janthinobacterium lividum Segawa et al., 2005
珠穆朗玛峰地区东绒布冰川冰、雪 α-, β-和γ-Proteobacteria, Actinobacteria, Firmicutes, CFB类群, Cyanobacteria,门TM7 Acinetobacter, Leclercia 刘勇勤等, 2006
冻土及寒冷带
南极常年冻土 α-proteobacteria, HCG Fibrobacter, Acidobacterium, Arthrobacter, Nocardioides, Bacillus, Caulobacter, Comamonas, Flavobacterium, Pseudomonas, Sphingobacterium, 另外还存在Nitrospina、green non-sulfur bacteria及其近缘细菌, Fibrobacter, Acidobacterium和CFB类群的属 Gilichinsky et al., 2007
西伯利亚冻土和冰沼土、加拿大北极高纬度地带和南极Dry Valley岩石和土壤 Bacillusc, Mycobacteria, Micrococcus, Brevibacterium, Planococcus, Arthrobacter, Clavibacter, Friedmanniella Christner et al., 2000
喜马拉雅山Pindari冰川的3个土壤样品P1S、P4S和P8S Actinobacteria, Firmicutes, Proteobacteria, Acidobacteria, Bacteroidetes, Gemmatimonadetes, Planctomycetes Shivaji et al., 2011
阿尔卑斯山冻土带早融雪位点(ESM)和晚融雪位点(LSM)土壤 ESM: Acidobacteria, Actinobacteria, α-proteobacteria
LSM: Acidobacteria
Zinger et al., 2009
湖泊、湿地及藻丛
珠穆朗玛峰两个冰碛湖和两个冰川融水湖 α-, β-和γ-Proteobacteria, CFB类群, Actinobacteria, Planctomycetes, Verrucomicrobia, Fibrobacteres, Eukaryoticchroloplast Liu et al., 2006
南极McMurdo Dry Valleys地区8-26539龄藻丛 Actinobacteria, Bacteroidetes, Firmicutes, Cyanobacteria, Proteobacteria, Deinococcus-Thermus类群 Sporosarcina Antibus et al., 2012
青藏高原若尔盖湿地 Methanolobus psychrophilus R15 Zhang et al., 2008
海冰和深海
南极海冰 α-和γ-Proteobacteria, CFB类群, 革兰氏阳性细菌, Chlamydiales和Verrucomicrobiales Colwellia, Shewanella, Marinobacter, Planococcus, Pseudoalteromonas, Psychrobacter, Halomonas, Pseudomonas, Hyphomonas, Sphingomonas, Arthrobacter, Halobacillus, ColwelliaAlteromonas近缘的新的系统发育类群及CFB类群中的一些属 Bowman et al., 1997; Brown & Bowman, 2001
北极Chukchi Sea浮冰 Proteobacteria, CFB类群 Alteromonas, Colwellia, Glaciecola, Octadecabacter, Pseudoaltermonas, Shewanella, Cytophaga, Flavobacterium, Gelidibacter, Polaribacter Junge et al., 2002
北极海冰的多年冰 α-和γ-proteobacteria, CFB类群 Bowman et al., 2012
不同地区深海海水 γ-Proteobacteria Shewanella, Photobacterium, Colwellia, Moritella, Psychromonas DeLong et al., 1997
冲绳海槽南部的深海 Alcanivorax, Bacillus, Cobetia, Halomonas, Methylarcula, Micrococcus, Myroides, Paracoccus, Planococcus, Pseudomonas, Psychrobacter, Sporosarcina, Wangia Dang et al., 2009
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