Biodiv Sci ›› 2023, Vol. 31 ›› Issue (11): 23214. DOI: 10.17520/biods.2023214
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Guangxu E1, Tiantian Bai2, Zhenyu Zhu1, Xuefeng Guo1,2,3,*()
Received:
2023-06-25
Accepted:
2023-10-18
Online:
2023-11-20
Published:
2023-12-08
Contact:
* E-mail: Guangxu E, Tiantian Bai, Zhenyu Zhu, Xuefeng Guo. Advances in research on the relationship between microbial diversity in the animal digestive tract and coevolution with the host[J]. Biodiv Sci, 2023, 31(11): 23214.
Fig. 1 Vertical transmission of digestive tract microorganisms between mouse generations (a) and horizontal transmission between zebrafish individual (b)
不同动物消化道 Digestive tract of different animals | 细菌 Bacteria | 真菌 Fungus | 古菌 Archaea | 原生生物 Protozoa |
---|---|---|---|---|
昆虫 Insect | 沃尔巴克氏菌 Woibachia | 毕赤酵母属 Pichia 酵母菌属 Saccharomyces 曲霉属 Aspergillus 青霉属 Penicillium Herpotrichiellaceae Phanerochaetaceae | 甲烷杆菌属 Methanobacterium 甲烷球菌属 Methanococcus 甲烷微菌属 Methanomicrobium | Oxymonadida Trichomonada Hypermastigida |
鱼类 Fish | 肠杆菌属 Enterobacter 气单胞菌属 Aeromonas 不动杆菌属 Acinetobacter 弧菌属 Vibrio 假单胞菌属 Pseudomonas 无色杆菌属 Achromobacter 棒杆菌属 Corynebacterium 黄杆菌属 Flavobacterium 微球菌属 Micrococcus | 假丝酵母菌属 Candida 酵母菌属 Saccharomyces 红酵母属 Rhodotorula 丝孢酵母属 Trichosporon 德巴利酵母属 Debaryomyces | 广古菌门 Euryarchaeota 纳古菌门 Nanoarchaeota 奇古菌门 Thaumarchaeota 初古菌门 Korarchaeota | 纤毛虫属 Balantidium 毛滴虫属 Trichomonas Paracichlidotherus Diplomonadida |
禽类 Poultry | 梭菌属 Clostridium 瘤胃球菌属 Ruminococcus 乳杆菌属 Lactobacillus 拟杆菌属 Bacteroides | 小囊菌属 Microascus 毛癣菌属 Trichophyton 曲霉属 Aspergillus 赤霉属 Gibberella 假丝酵母菌属 Candida | ||
反刍动物 Ruminant | 普雷沃氏菌属 Prevotella 拟杆菌属 Bacteroides 丁酸弧菌属 Butyrivibrio 梭菌属 Clostridium 颤螺菌属 Oscillospira 瘤胃球菌属 Ruminococcus 琥珀酸菌属 Succiniclasticum 琥珀酸弧菌属 Succinivibrio | 盲肠鞭菌属 Caecomyces 新美鞭菌属 Neocallimastix 梨囊鞭菌属 Piromyces | 嗜甲烷菌科 Methanomethylophilaceae 甲烷球形菌属 Methanosphaera 甲烷短杆菌属 Methanobrevibacter | 内毛虫目 Entodiniomorphida 复毛虫属 Diplodinium 前毛虫属 Epidinium Enoploplastron |
植食性单胃哺乳动物 Herbivorous monogastric mammals | 乳杆菌属 Lactobacillus 链球菌属 Streptococcus 放线杆菌属 Actinobacillus 八叠球菌属 Sarcina 拟杆菌属 Bacteroides 普雷沃氏菌属 Prevotella 梭菌属 Clostridium 螺毛菌属 Lachnospiraceae 瘤胃球菌属 Ruminococcus 密螺旋体属 Treponema | 新美鞭菌属 Neocallimastix 根囊鞭菌属 Orpinomyces 厌氧鞭菌属 Anaeromyces | 甲烷粒菌属 Methanocorpusculum 瘤胃甲烷短杆菌 Methanobrevibacter ruminantium | 纤毛虫属 Balantidium 贾第虫属 Giardia 毛滴虫属 Trichomonas |
Table 1 Dominant microorganisms in the digestive tract of different animals
不同动物消化道 Digestive tract of different animals | 细菌 Bacteria | 真菌 Fungus | 古菌 Archaea | 原生生物 Protozoa |
---|---|---|---|---|
昆虫 Insect | 沃尔巴克氏菌 Woibachia | 毕赤酵母属 Pichia 酵母菌属 Saccharomyces 曲霉属 Aspergillus 青霉属 Penicillium Herpotrichiellaceae Phanerochaetaceae | 甲烷杆菌属 Methanobacterium 甲烷球菌属 Methanococcus 甲烷微菌属 Methanomicrobium | Oxymonadida Trichomonada Hypermastigida |
鱼类 Fish | 肠杆菌属 Enterobacter 气单胞菌属 Aeromonas 不动杆菌属 Acinetobacter 弧菌属 Vibrio 假单胞菌属 Pseudomonas 无色杆菌属 Achromobacter 棒杆菌属 Corynebacterium 黄杆菌属 Flavobacterium 微球菌属 Micrococcus | 假丝酵母菌属 Candida 酵母菌属 Saccharomyces 红酵母属 Rhodotorula 丝孢酵母属 Trichosporon 德巴利酵母属 Debaryomyces | 广古菌门 Euryarchaeota 纳古菌门 Nanoarchaeota 奇古菌门 Thaumarchaeota 初古菌门 Korarchaeota | 纤毛虫属 Balantidium 毛滴虫属 Trichomonas Paracichlidotherus Diplomonadida |
禽类 Poultry | 梭菌属 Clostridium 瘤胃球菌属 Ruminococcus 乳杆菌属 Lactobacillus 拟杆菌属 Bacteroides | 小囊菌属 Microascus 毛癣菌属 Trichophyton 曲霉属 Aspergillus 赤霉属 Gibberella 假丝酵母菌属 Candida | ||
反刍动物 Ruminant | 普雷沃氏菌属 Prevotella 拟杆菌属 Bacteroides 丁酸弧菌属 Butyrivibrio 梭菌属 Clostridium 颤螺菌属 Oscillospira 瘤胃球菌属 Ruminococcus 琥珀酸菌属 Succiniclasticum 琥珀酸弧菌属 Succinivibrio | 盲肠鞭菌属 Caecomyces 新美鞭菌属 Neocallimastix 梨囊鞭菌属 Piromyces | 嗜甲烷菌科 Methanomethylophilaceae 甲烷球形菌属 Methanosphaera 甲烷短杆菌属 Methanobrevibacter | 内毛虫目 Entodiniomorphida 复毛虫属 Diplodinium 前毛虫属 Epidinium Enoploplastron |
植食性单胃哺乳动物 Herbivorous monogastric mammals | 乳杆菌属 Lactobacillus 链球菌属 Streptococcus 放线杆菌属 Actinobacillus 八叠球菌属 Sarcina 拟杆菌属 Bacteroides 普雷沃氏菌属 Prevotella 梭菌属 Clostridium 螺毛菌属 Lachnospiraceae 瘤胃球菌属 Ruminococcus 密螺旋体属 Treponema | 新美鞭菌属 Neocallimastix 根囊鞭菌属 Orpinomyces 厌氧鞭菌属 Anaeromyces | 甲烷粒菌属 Methanocorpusculum 瘤胃甲烷短杆菌 Methanobrevibacter ruminantium | 纤毛虫属 Balantidium 贾第虫属 Giardia 毛滴虫属 Trichomonas |
口腔 Oral | 食道 Esophagus | 胃 Stomach | 小肠 Small intestine | 大肠 Large intestine |
---|---|---|---|---|
孪生球菌属 Gemella 韦荣氏球菌属 Veillonella 奈瑟菌属 Neisseria 梭杆菌属 Fusobacterium 链球菌属 Streptococcus 普雷沃氏菌 Prevotella 假单胞菌属 Pseudomonas 放线菌属 Actinomyces | 链球菌属 Streptococcus 普雷沃氏菌 Prevotella 韦荣氏球菌属Veillonella | 芽孢杆菌 Bacillales incertae sedis 链球菌属 Streptococcus 肠杆菌属 Enterobacter 纤毛菌属 Leptotrichia 韦荣氏球菌属 Veillonella 假单胞菌属 Pseudomonas | 链球菌属 Streptococcus 普雷沃氏菌 Prevotella 韦荣氏球菌属 Veillonella 梭杆菌 Fusobacterium 大肠杆菌 Escherichia coli 克雷伯菌 Klebsiella 柠檬酸杆菌 Citrobacter | 梭菌科 Clostridiaceae 螺毛菌科 Lachnospiraceae 拟杆菌科 Bacteroidaceae |
Table 4 Dominant microorganisms in different parts of human digestive tract
口腔 Oral | 食道 Esophagus | 胃 Stomach | 小肠 Small intestine | 大肠 Large intestine |
---|---|---|---|---|
孪生球菌属 Gemella 韦荣氏球菌属 Veillonella 奈瑟菌属 Neisseria 梭杆菌属 Fusobacterium 链球菌属 Streptococcus 普雷沃氏菌 Prevotella 假单胞菌属 Pseudomonas 放线菌属 Actinomyces | 链球菌属 Streptococcus 普雷沃氏菌 Prevotella 韦荣氏球菌属Veillonella | 芽孢杆菌 Bacillales incertae sedis 链球菌属 Streptococcus 肠杆菌属 Enterobacter 纤毛菌属 Leptotrichia 韦荣氏球菌属 Veillonella 假单胞菌属 Pseudomonas | 链球菌属 Streptococcus 普雷沃氏菌 Prevotella 韦荣氏球菌属 Veillonella 梭杆菌 Fusobacterium 大肠杆菌 Escherichia coli 克雷伯菌 Klebsiella 柠檬酸杆菌 Citrobacter | 梭菌科 Clostridiaceae 螺毛菌科 Lachnospiraceae 拟杆菌科 Bacteroidaceae |
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