生物多样性 ›› 2013, Vol. 21 ›› Issue (4): 445-455. DOI: 10.3724/SP.J.1003.2013.11094
所属专题: 微生物多样性专辑
收稿日期:
2013-04-11
接受日期:
2012-07-17
出版日期:
2013-07-20
发布日期:
2013-07-29
通讯作者:
肖湘
基金资助:
Fengping Wang, Yueheng Zhou, Xinxu Zhang, Xiang Xiao*()
Received:
2013-04-11
Accepted:
2012-07-17
Online:
2013-07-20
Published:
2013-07-29
Contact:
Xiao Xiang
摘要:
海洋面积约占地球总面积的70%, 平均深度3,800 m, 海底平均压力38 MPa, 海水以下更是包含有物理化学性质迥异的多种地质结构, 例如海洋沉积物、洋壳、热液口以及冷泉等。这些性质迥异的地质结构环境造就了丰富的生物多样性, 构成了地球上最大的微生物生态系统。深海海水中最主要的微生物类群是α-, γ-变形菌(Alpha- & Gammaproteobacteria), 以及海洋古菌群 I(Marine Group I)。深海沉积物中微生物含量与有机物含量和距离大陆板块的距离相关, 以异养微生物为主。深海冷泉区富集了厌氧甲烷氧化古菌ANME和硫酸盐还原菌(Deltaproteobacteria); 深海热液区由于具有化学物质的多样性和快速的动态变化而导致形成微生物的高度多样性。洋壳主要由基性、超基性岩构成, 含有丰富的矿物, 其中不乏参与铁、锰、硫等关键代谢反应的化能自养微生物。同时, 由于环境中99%以上的微生物没有已培养的亲缘种, 因此对深海微生物的多样性、生理功能特性以及生物地球化学作用的理解和研究仍然存在巨大的挑战。本文将尝试从不同的深海环境分区来综述深海海水、沉积物、洋壳, 以及冷泉区和热液口等特殊生态环境中微生物的分布和多样性。
王风平, 周悦恒, 张新旭, 肖湘 (2013) 深海微生物多样性. 生物多样性, 21, 445-455. DOI: 10.3724/SP.J.1003.2013.11094.
Fengping Wang,Yueheng Zhou,Xinxu Zhang,Xiang Xiao (2013) Biodiversity of deep-sea microorganisms. Biodiversity Science, 21, 445-455. DOI: 10.3724/SP.J.1003.2013.11094.
1 | Arístegui J, Duarte CM, Agustí S, Doval M, Álvarez-Salgado XA, Hansell DA (2002) Dissolved organic carbon support of respiration in the dark ocean.Science, 298, 1967. |
2 | Auguet JC, Barberan A, Casamayor EO (2009) Global ecological patterns in uncultured Archaea.The ISME Journal, 4, 182-190. |
3 | Bach W, Edwards KJ (2003) Iron and sulfide oxidation within the basaltic ocean crust: implications for chemolith- oautotrophic microbial biomass production.Geochimica et Cosmochimica Acta, 67, 3871-3887. |
4 | Bartlett DH (1999) Microbial adaptations to the psychro- sphere/piezosphere.Journal of Molecular Microbiology and Biotechnology, 1, 93-100. |
5 | Beal EJ, House CH, Orphan VJ (2009) Manganese- and iron-dependent marine methane oxidation.Science, 325, 184-187. |
6 | Behrens S, Lösekann T, Pett-Ridge J, Weber PK, Ng WO, Stevenson BS, Hutcheon ID, Relman DA, Spormann AM (2008) Linking microbial phylogeny to metabolic activity at the single-cell level by using enhanced element labeling-catalyzed reporter deposition fluorescence in situ hybridization (EL-FISH) and NanoSIMS.Applied and Environmental Microbiology, 74, 3143-3150. |
7 | Biddle JF, Lipp JS, Lever MA, Lloyd KG, Sørensen KB, Anderson R, Fredricks HF, Elvert M, Kelly TJ, Schrag DP, Sogin ML, Brenchley JE, Teske A, House CH, Hinrichs KU (2006) Heterotrophic Archaea dominate sedimentary subsurface ecosystems off Peru. Proceedings of the National Academy of Sciences, USA, 103, 3846-3851. |
8 | Boetius A, Ravenschlag K, Schubert CJ, Rickert D, Widdel F, Gieseke A, Amann R, Jørgensen BB, Witte U, Pfannkuche O (2000) A marine microbial consortium apparently mediating anaerobic oxidation of methane.Nature, 407, 623-626. |
9 | Bowman JP, McCuaig RD (2003) Biodiversity, community structural shifts, and biogeography of prokaryotes within Antarctic continental shelf sediment.Applied and Environmental Microbiology, 69, 2463-2483. |
10 | Brazelton WJ, Ludwig KA, Sogin ML, Andreishcheva EN, Kelley DS, Shen CC, Edwards RL, Baross JA (2010) Archaea and bacteria with surprising microdiversity show shifts in dominance over 1,000-year time scales in hydrothermal chimneys. Proceedings of the National Academy of Sciences, USA, 107, 1612-1617. |
11 | Brazelton WJ, Schrenk MO, Kelley DS, Baross JA (2006) Methane-and sulfur-metabolizing microbial communities dominate the Lost City hydrothermal field ecosystem.Applied and Environmental Microbiology, 72, 6257-6270. |
12 | Brown MV, Philip GK, Bunge JA, Smith MC, Bissett A, Lauro FM, Fuhrman JA, Donachie SP (2009) Microbial community structure in the North Pacific ocean.The ISME Journal, 3, 1374-1386. |
13 | Brust J, Waniek JJ (2010) Atmospheric dust contribution to deep-sea particle fluxes in the subtropical Northeast Atlantic.Deep Sea Research Part I: Oceanographic Research Papers, 57, 988-998. |
14 | Canfield DE, Jørgensen BB, Fossing H, Glud R, Gundersen J, Ramsing NB, Thamdrup B, Hansen JW, Nielsen LP, Hall PO (1993) Pathways of organic carbon oxidation in three continental margin sediments.Marine Geology, 113, 27-40. |
15 | Christensen JP (1989) Sulfate reduction and carbon oxidation rates in continental shelf sediments, an examination of offshelf carbon transport.Continental Shelf Research, 9, 223-246. |
16 | Claypool GE, Kvenvolden KA (1983) Methane and other hydrocarbon gases in marine sediment.Annual Review of Earth and Planetary Sciences, 11, 299-327. |
17 | Corliss JB, Dymond J, Gordon LI, Edmond JM, Herzen RP, Ballard RD, Green K, Williams D, Bainbridge A, Crane K, Andel TH (1979) Submarine thermal Sprirngs on the Galapagos Rift.Science, 203, 1073-1083. |
18 | D’Hondt S, Jørgensen BB, Miller DJ, Batzke A, Blake R, Cragg BA, Cypionka H, Dickens GR, Ferdelman T, Hinrichs KU, Holm NG, Mitterer R, Spivack A, Wang GZ, Bekins B, Engelen B, Ford K, Gettemy G, Rutherford SD, Sass H, Skilbeck CG, Aiello IW, Guèrin G, House GH, Inagaki F, Meister P, Naehr T, Niitsuma S, Parkes RJ, Schippers A, Smith DC, Teske A, Wiegel J, Padilla CN, Acosta JLS (2004) Distributions of microbial activities in deep subseafloor sediments.Science, 306, 2216-2221. |
19 | D’Hondt S, Spivack AJ, Pockalny R, Ferdelman TG, Fischer JP, Kallmeyer J, Abrams LJ, Smith DC, Graham D, Hasiuk F, Schrum H, Stancin AM (2009) Subseafloor sedimentary life in the South Pacific Gyre. Proceedings of the National Academy of Sciences, USA, 106, 11651-11656. |
20 | Dekas AE, Poretsky RS, Orphan VJ (2009) Deep-sea archaea fix and share nitrogen in methane-consuming microbial consortia.Science, 326, 422-426. |
21 | DeLong EF (1992) Archaea in coastal marine environments. Proceedings of the National Academy of Sciences, USA, 89, 5685-5689. |
22 | DeLong EF, Preston CM, Mincer T, Rich V, Hallam SJ, Frigaard NU, Martinez A, Sullivan MB, Edwards R, Brito BR, Chisholm SW, Karl DM (2006) Community genomics among stratified microbial assemblages in the ocean’s interior.Science, 311, 496-503. |
23 | DeLong EF, Wu KY, Prézelin BB, Jovine RV (1994) High abundance of Archaea in Antarctic marine picoplankton.Nature, 371, 695-697. |
24 | Dick GJ, Lee YE, Tebo BM (2006) Manganese (II)-oxidizing Bacillus spores in Guaymas Basin hydrothermal sediments and plumes.Applied and Environmental Microbiology, 72, 3184-3190. |
25 | Edwards KJ, Bach W, McCollom TM, Rogers DR (2004) Neutrophilic iron-oxidizing bacteria in the ocean: their habitats, diversity, and roles in mineral deposition, rock alteration, and biomass production in the deep-sea.Geomicrobiology Journal, 21, 393-404. |
26 | Edwards KJ, Becker K, Colwell F (2012) The deep, dark energy biosphere: intraterrestrial life on Earth.Annual Review of Earth and Planetary Sciences, 40, 551-568. |
27 | Edwards KJ, Rogers DR, Wirsen CO, McCollom TM (2003) Isolation and characterization of novel psychrophilic, neutrophilic, Fe-oxidizing, chemolithoautotrophic α- and γ-Proteobacteria from the deep sea.Applied and Environmental Microbiology, 69, 2906-2913. |
28 | Edwards KJ, Wheat CG, Sylvan JB (2011) Under the sea: microbial life in volcanic oceanic crust.Nature Reviews Microbiology, 9, 703-712. |
29 | Elsaied HE, Hayashi T, Naganuma T (2004) Molecular an- alysis of deep-sea hydrothermal vent aerobic methanotrophs by targeting genes of 16S rRNA and particulate methane monooxygenase.Marine Biotechnology, 6, 503-509. |
30 | Emerson D, Fleming EJ, McBeth JM (2010) Iron-oxidizing bacteria: an environmental and genomic perspective.Annual Review of Microbiology, 64, 561-583. |
31 | Engelen B, Ziegelmüller K, Wolf L, Köpke B, Gittel A, Cypionka H, Treude T, Nakagawa S, Inagaki F, Lever MA, Steinsbu BO (2008) Fluids from the oceanic crust support microbial activities within the deep biosphere.Geomicrobiology Journal, 25, 56-66. |
32 | Expedition 336 Scientists (2011) Mid-Atlantic Ridge Micro- biology: Initiation of Long-Term Coupled Microbiological, Geochemical, and Hydrological Experimentation Within the Seafloor at North Pond, Western Flank of the Mid-Atlantic Ridge. IODP Prel Rept, 336. |
33 | Fang JS, Zhang L (2011) Exploring the deep biosphere.Science China: Earth Sciences, 54, 157-165. |
34 | Flores GE, Campbell JH, Kirshtein JD, Meneghin J, Podar M, Steinberg JI, Seewald JS, Tivry MK, Voytek MA, Yang ZK, Reysenbach AL (2011) Microbial community structure of hydrothermal deposits from geochemically different vent fields along the Mid-Atlantic Ridge.Environmental Microbiology, 13, 2158-2171. |
35 | Fry JC, Parkes RJ, Cragg BA, Weightman AJ, Webster G (2008) Prokaryotic biodiversity and activity in the deep subseafloor biosphere.FEMS Microbiology Ecology, 66, 181-196. |
36 | Fuhrman JA (1992) Novel major archaebacterial group from marine plankton.Nature, 356, 148-149. |
37 | Fuhrman JA, Ouverney CC (1998) Marine microbial diversity studied via 16S rRNA sequences: cloning results from coastal waters and counting of native archaea with fluorescent single cell probes.Aquatic Ecology, 32, 3-15. |
38 | Gao HC, Obraztova A, Stewart N, Popa R, Fredrickson JK, Tiedje JM, Nealson KH, Zhou JZ (2006) Shewanella loihica sp. nov., isolated from iron-rich microbial mats in the Pacific Ocean.International Journal of Systematic and Evolutionary Microbiology, 56, 1911-1916. |
39 | Hallam SJ, Mincer TJ, Schleper C, Preston CM, Roberts K, Richardson PM, DeLong EF (2006) Pathways of carbon assimilation and ammonia oxidation suggested by environmental genomic analyses of marine Crenarchaeota.PLoS Biology, 4(4), e95. |
40 | Huber JA, Butterfield DA, Baross JA (2002) Temporal changes in archaeal diversity and chemistry in a mid-ocean ridge subseafloor habitat.Applied and Environmental Micro- biology, 68, 1585-1594. |
41 | Inagaki F, Nunoura T, Nakagawa S, Teske A, Lever M, Lauer A, Suzuki M, Takai K, Delwiche M, Colwell FS, Nealson KH, Horikoshi K, D’Hondt S, Jørgensen BB (2006) Biogeographical distribution and diversity of microbes in methane hydrate-bearing deep marine sediments on the Pacific Ocean Margin. Proceedings of the National Academy of Sciences, USA, 103, 2815-2820. |
42 | Inagaki F, Suzuki M, Takai K, Oida H, Sakamoto T, Aoki K, Nealson KH, Horikoshi K (2003) Microbial communities associated with geological horizons in coastal subseafloor sediments from the Sea of Okhotsk.Applied and Environmental Microbiology, 69, 7224-7235. |
43 | IWG Supporting Office (2010) Illuminating earth through subseafloor sampling, observation, and experimentation: The international ocean discovery program, science plan for 2013-2023. Washington DC. |
44 | Johnson HP, Pruis MJ (2003) Fluxes of fluid and heat from the oceanic crustal reservoir.Earth and Planetary Science Letters, 216, 565-574. |
45 | Jørgensen BB (1982) Mineralization of organic matter in the sea bed: the role of sulphate reduction.Nature, 296, 643-645. |
46 | Jørgensen BB, Nelson DC (2004) Sulfide oxidation in marine sediments: geochemistry meets microbiology.Geological Society of America, 379, 63-81. |
47 | Joye SB, Boetius A, Orcutt BN, Montoya JP, Schulz HN, Erickson MJ, Lugo SK (2004) The anaerobic oxidation of methane and sulfate reduction in sediments from Gulf of Mexico cold seeps.Chemical Geology, 205, 219-238. |
48 | Kallmeyer J, Pockalny R, Adhikari RR, Smith DC, D’Hondt S (2012) Global distribution of microbial abundance and biomass in subseafloor sediment. Proceedings of the National Academy of Sciences, USA, 109, 16213-16216. |
49 | Karner MB, DeLong EF, Karl DM (2001) Archaeal dominance in the mesopelagic zone of the Pacific Ocean.Nature, 409, 507-510. |
50 | Kaye JZ, Baross JA (2006) High incidence of halotolerant bacteria in Pacific hydrothermal-vent and pelagic environments.FEMS Microbiology Ecology, 32, 249-260. |
51 | Kelley DS, Baross JA, Delaney JR (2002) Volcanoes, fluids, and life at mid-ocean ridge spreading centers.Annual Review of Earth and Planetary Sciences, 30, 385-491. |
52 | Kelley DS, Karson JA, Blackman DK, Früh-Green GL, Butterfield DA, Lilley MD, Olson EJ, Schrenk MO, Roe KK, Lebon GT, Rivizzigno P (2001) An off-axis hydrothermal vent field near the Mid-Atlantic Ridge at 30 degrees N.Nature, 412, 145-149. |
53 | Kelley DS, Karson JA, Früh-Green GL, Yoerger DR, Shank TM, Butterfield DA, Hayes JM, Schrenk MO, Olson EJ (2005) A serpentinite-hosted ecosystem: the Lost City hydrothermal field.Science, 307, 1428-1434. |
54 | Knittel K, Lösekann T, Boetius A, Kort R, Amann R (2005) Diversity and distribution of methanotrophic archaea at cold seeps.Applied and Environmental Microbiology, 71, 467-479. |
55 | Könneke M, Bernhard AE, José R, Walker CB, Waterbury JB, Stahl DA (2005) Isolation of an autotrophic ammonia- oxidizing marine archaeon.Nature, 437, 543-546. |
56 | Lam P, Cowen JP, Popp BN, Jones RD (2008) Microbial ammonia oxidation and enhanced nitrogen cycling in the Endeavour hydrothermal plume.Geochimica et Cos- mochimica Acta, 72, 2268-2286. |
57 | Lever MA (2011) Acetogenesis in the energy-starved deep biosphere—a paradox? Frontiers in Microbiology, 2, 248. |
58 | Lever MA, Heuer VB, Morono Y, Masui N, Schmidt F, Alperin MJ, Inagaki F, Hinrichs KU, Teske A (2010) Acetogenesis in deep subseafloor sediments of the Juan de Fuca Ridge Flank: a synthesis of geochemical, thermodynamic, and gene-based evidence.Geomicrobiology Journal, 27, 183-211. |
59 | Li T, Wang P, Wang PX (2008) Bacterial and archaeal diversity in surface sediment from the south slope of the South China Sea.Acta Microbiologica Sinica, 48, 323-329. |
60 | Lin HT, Cowen JP, Olson EJ, Amend JP, Lilley MD (2012) Inorganic chemistry, gas compositions and dissolved organic carbon in fluids from sedimented young basaltic crust on the Juan de Fuca Ridge flanks.Geochimica et Cosmochimica Acta, 85, 213-227. |
61 | Lipp JS, Morono Y, Inagaki F, Hinrichs KU (2008) Significant contribution of Archaea to extant biomass in marine subsurface sediments.Nature, 454, 991-994. |
62 | Lysnes K, Thorseth IH, Steinsbu BO, Øvreås L, Torsvik T, Pedersen RB (2004) Microbial community diversity in seafloor basalt from the Arctic spreading ridges.FEMS Microbiology Ecology, 50, 213-230. |
63 | Marty B (1995) Nitrogen content of the mantle inferred from N2-Ar correlation in oceanic basalts.Nature, 377, 326-329. |
64 | Mason OU, Di Meo-Savoie CA, van Nostrand JD, Zhou J, Fisk MR, Giovannoni SJ (2008) Prokaryotic diversity, distribution, and insights into their role in biogeochemical cycling in marine basalts.The ISME Journal, 3, 231-242. |
65 | Mason OU, Stingl U, Wilhelm LJ, Moeseneder MM, Meo-Savoie D, Carol A, Fisk MR, Giovannoni SJ (2007) The phylogeny of endolithic microbes associated with marine basalts.Environmental Microbiology, 9, 2539-2550. |
66 | McCollom TM (2000) Geochemical constraints on primary productivity in submarine hydrothermal vent plumes.Deep Sea Research Part I: Oceanographic Research Papers, 47, 85-101. |
67 | McCollom TM (2007) Geochemical constraints on sources of metabolic energy for chemolithoautotrophy in ultramafic- hosted deep-sea hydrothermal systems.Astrobiology, 7, 933-950. |
68 | Moeseneder MM, Smith KL, Ruhl HA, Jones DOB, Witte U, Prosser JI (2012) Temporal and depth-related differences in prokaryotic communities in abyssal sediments associated with particulate organic carbon flux.Deep Sea Research Part I: Oceanographic Research Papers, 70, 26-35. |
69 | Morris RM, Rappe MS, Urbach E, Connon SA, Giovannoni SJ (2004) Prevalence of the Chloroflexi-related SAR202 bacterioplankton cluster throughout the mesopelagic zone and deep ocean.Applied and Environmental Microbiology, 70, 2836-2842. |
70 | Nauhaus K, Boetius A, Krüger M, Widdel F (2002) In vitro demonstration of anaerobic oxidation of methane coupled to sulphate reduction in sediment from a marine gas hydrate area.Environmental Microbiology, 4, 296-305. |
71 | Nauhaus K, Treude T, Boetius A, Krüger M (2004) Environmental regulation of the anaerobic oxidation of methane: a comparison of ANME-I and ANME-I communities.Environmental Microbiology, 7, 98-106. |
72 | Nercessian O, Fouquet Y, Pierre C, Prieur D, Jeanthon C (2005) Diversity of Bacteria and Archaea associated with a carbonate-rich metalliferous sediment sample from the Rainbow vent field on the Mid-Atlantic Ridge.Environmental Microbiology, 7, 698-714. |
73 | Nercessian O, Reysenbach AL, Prieur D, Jeanthon C (2003) Archaeal diversity associated with in situ samplers deployed on hydrothermal vents on the East Pacific Rise (13 N).Environmental Microbiology, 5, 492-502. |
74 | Newberry CJ, Webster G, Cragg BA, Parkes RJ, Weightman AJ, Fry JC (2004) Diversity of prokaryotes and meth- anogenesis in deep subsurface sediments from the Nankai Trough, Ocean Drilling Program Leg 190.Environmental Microbiology, 6, 274-287. |
75 | Nunoura T, Takaki Y, Kakuta J, Nishi S, Sugahara J, Hiromi K, Chee GJ, Hattori M, Kanai A, Atomi Hm Takai K, Takami H (2011) Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group.Nucleic Acids Research, 39, 3204-3223. |
76 | Orcutt BN, Sylvan JB, Knab NJ, Edwards KJ (2011) Microbial ecology of the dark ocean above, at, and below the seafloor.Microbiology and Molecular Biology Reviews, 75, 361-422. |
77 | Ouverney CC, Fuhrman JA (2000) Marine planktonic Archaea take up amino acids.Applied and Environmental Micro- biology, 66, 4829-4833. |
78 | Pagé A, Tivey MK, Stakes DS, Reysenbach AL (2008) Temporal and spatial archaeal colonization of hydrothermal vent deposits.Environmental Microbiology, 10, 874-884. |
79 | Parkes RJ, Cragg BA, Bale SJ, Getlifff JM, Goodman K, Rochelle PA, Fry JC, Weightman AJ, Harvey SM (1994) Deep bacterial biosphere in Pacific Ocean sediments.Nature, 371, 410-413. |
80 | Parkes RJ, Cragg BA, Wellsbury P (2000) Recent studies on bacterial populations and processes in subseafloor sediments: a review.Hydrogeology Journal, 8, 11-28. |
81 | Parkes RJ, Webster G, Cragg BA, Weightman AJ, Newberry CJ, Ferdelman TG, Kallmeyer J, Jørgensen BB, Aiello IW, Fry JC (2005) Deep sub-seafloor prokaryotes stimulated at interfaces over geological time.Nature, 436, 390-394. |
82 | Pearson A, McNichol AP, Benitez-Nelson BC, Hayer JM, Eglinton TI (2001) Origins of lipid biomarkers in Santa Monica Basin surface sediment: a case study using compound-specific Δ14C analysis.Geochimica et Cosmo- chimica Acta, 65, 3123-3137. |
83 | Pham VD, Konstantinidis KT, Palden T, DeLong EF (2008) Phylogenetic analyses of ribosomal DNA-containing bacterioplankton genome fragments from a 4000 m vertical profile in the North Pacific Subtropical Gyre.Environmental Microbiology, 10, 2313-2330. |
84 | Pollack HN, Hurter SJ, Johnson JR (1993) Heat flow from the Earth’s interior: analysis of the global data set.Reviews of Geophysics, 31, 267-280. |
85 | Polymenakou PN, Bertilsson S, Tselepides A, Stephanou EG (2005) Bacterial community composition in different sediments from the Eastern Mediterranean Sea: a comparison of four 16S ribosomal DNA clone libraries.Microbial Ecology, 50, 447-462. |
86 | Polymenakou PN, Lampadariou N, Mandalakis M, Tselepides A (2009) Phylogenetic diversity of sediment bacteria from the southern Cretan margin, Eastern Mediterranean Sea.Systematic and Applied Microbiology, 32, 17-26. |
87 | Reeburgh WS (1983) Rates of biogeochemical processes in anoxic sediments.Annual Review of Earth and Planetary Sciences, 11, 269. |
88 | Reed DW, Fujita Y, Delwiche ME, Blackwelder DB, Sheridan PP, Uchida T, Colwell FS (2002) Microbial communities from methane hydrate-bearing deep marine sediments in a forearc basin.Applied and Environmental Microbiology, 68, 3759-3770. |
89 | Reysenbach AL, Longnecker K, Kirshtein J (2000) Novel bacterial and archaeal lineages from an in situ growth chamber deployed at a Mid-Atlantic Ridge hydrothermal vent.Applied and Environmental Microbiology, 66, 3798-3806. |
90 | Rogers DR, Santelli CM, Edwards KJ (2003) Geomicrobiology of deep-sea deposits: estimating community diversity from low-temperature seafloor rocks and minerals.Geobiology, 1, 109-117. |
91 | Røy H, Kallmeyer J, Adhikari RR, Pockalny R, Jørgensen BB, D’Hondt S (2012) Aerobic microbial respiration in 86-million-year-old deep-sea red clay.Science, 336, 922-925. |
92 | Santelli CM, Orcutt BN, Banning E, Bach W, Moyer CL, Sogin ML, Staudigel H, Edwards KJ (2008) Abundance and diversity of microbial life in ocean crust.Nature, 453, 653-656. |
93 | Schrenk MO, Huber JA, Edwards KJ (2010) Microbial provinces in the subseafloor.Annual Review of Marine Science, 2, 279-304. |
94 | Scientists E (2011) South Pacific Gyre subseafloor life. IODP Expedition 323 Preliminary Report 329. doi:10.2204/iodp. pr.329.2011. |
95 | Sievert SM, Hügler M, Taylor CD, Wirsen CO (2008) Sulfur oxidation at deep-sea hydrothermal vents. In: Microbial Sulfur Metabolism (eds Dahl C, Friedrich CG), pp. 238-258. Springer-Verlag, Berlin Heidelberg. |
96 | Sørensen KB, Lauer A, Teske A (2004) Archaeal phylotypes in a metal-rich and low-activity deep subsurface sediment of the Peru Basin, ODP Leg 201, Site 1231.Geobiology, 2, 151-161. |
97 | Sørensen KB, Teske A (2006) Stratified communities of active archaea in deep marine subsurface sediments.Applied and Environmental Microbiology, 72, 4596-4603. |
98 | Sunamura M, Higashi Y, Miyako C, Ishibashi JI, Maruyama A (2004) Two bacteria phylotypes are predominant in the Suiyo Seamount hydrothermal plume.Applied and Environ- mental Microbiology, 70, 1190-1198. |
99 | Takai K, Horikoshi K (1999) Genetic diversity of archaea in deep-sea hydrothermal vent environments.Genetics, 152, 1285-1297. |
100 | Tebo BM, Johnson HA, McCarthy JK, Templeton AS (2005) Geomicrobiology of manganese (II) oxidation.Trends in Microbiology, 13(9), 421-428. |
101 | Templeton AS, Staudigel H, Tebo BM (2005) Diverse Mn (II)-oxidizing bacteria isolated from submarine basalts at Loihi Seamount.Geomicrobiology Journal, 22, 127-139. |
102 | Teske A, Hinrichs KU, Edgcomb V, de Vara Gomez A, Kysela D, Sylva SP, Sogin ML, Jannasch HW (2002) Microbial diversity of hydrothermal sediments in the Guaymas Basin: evidence for anaerobic methanotrophic communities.Applied and Environmental Microbiology, 68, 1994-2007. |
103 | Teske AP (2006) Microbial communities of deep marine subsurface sediments: molecular and cultivation surveys.Geomicrobiology Journal, 23, 357-368. |
104 | Thorseth IH, Pedersen RB, Christie DM (2003) Microbial alteration of 0-30-Ma seafloor and sub-seafloor basaltic glasses from the Australian Antarctic Discordance.Earth and Planetary Science Letters, 215, 237-247. |
105 | Treude T, Boetius A, Knittel K, Wallmann K, Jøergensen BB (2003) Anaerobic oxidation of methane above gas hydrates at Hydrate Ridge, NE Pacific Ocean.Marine Ecology Progress Series, 264, 1-14. |
106 | Vetriani C, Jannasch HW, MacGregor BJ, Stahl DA, Re- ysenbach AL (1999) Population structure and phylogenetic characterization of marine benthic archaea in deep-sea sediments.Applied and Environmental Microbiology, 65, 4375-4384. |
107 | Walsh DA, Zaikova E, Howes CG, Song YC, Wright JJ, Tringe SG, Tortell PD, Hallam SJ (2009) Metagenome of a versatile chemolithoautotroph from expanding oceanic dead zones.Science, 326, 578-582. |
108 | Wang FP, Lu SL, Orcutt BN, Xie W, Chen Y, Xiao X, Edwards KJ (2013) Discovering the roles of subsurface microorganisms: progress and future of deep biosphere investigation.Chinese Science Bulletin, 58, 1-12. |
109 | Wang FP, Zhou HY, Meng J, Peng XT, Jiang LJ, Sun P, Zhang CL, van Nostrand JDV, Deng Y, Wu LY, Zhou JZ, Xiao X (2009) GeoChip-based analysis of metabolic diversity of microbial communities at the Juan de Fuca Ridge hydrothermal vent. Proceedings of the National Academy of Sciences, USA, 106, 4840-4845. |
110 | Webster G, John Parkes R, Cragg BA, Newberry CJ, Weight- man AJ, Fry JC (2006) Prokaryotic community composition and biogeochemical processes in deep subseafloor sediments from the Peru Margin.FEMS Microbiology Ecology, 58, 65-85. |
111 | Whitman WB, Coleman DC, Wiebe WJ (1998) Prokaryotes: the unseen majority. Proceedings of the National Academy of Sciences, USA, 95, 6578-6583. |
112 | Xie W, Wang F, Guo L, Chen Z, Sievert SM, Meng J, Huang G, Li Y, Yan Q, Wu S, Wang X, Chen S, He G, Xiao X, Xu A (2010) Comparative metagenomics of microbial commu- nities inhabiting deep-sea hydrothermal vent chimneys with contrasting chemistries.The ISME Journal, 5, 414-426. |
113 | Zaballos M, López AL, Ovreas L, Bartual SG, D’Auria G, Alba JC, Legault B, Pushker R, Daae FL, Valera FR (2006) Comparison of prokaryotic diversity at offshore oceanic locations reveals a different microbiota in the Mediterranean Sea.FEMS Microbiology Ecology, 56, 389-405. |
114 | Zeng X, Birrien JL, Fouquet Y, Cherkashov G, Jebbar M, Querellou J, Oger P, Bonavita MAC, Xiao X, Prieur D (2009) Pyrococcus CH1, an obligate piezophilic hyperthermophile: extending the upper pressure-temperature limits for life.The ISME Journal, 3, 873-876. |
115 | Zhang Y, Henriet JP, Bursens J, Boon N (2010) Stimulation of in vitro anaerobic oxidation of methane rate in a continuous high-pressure bioreactor.Bioresource Technology, 101, 3132-3138. |
116 | Zhang Y, Maignien L, Zhao XX, Wang FP, Boon N (2011) Enrichment of a microbial community performing anaerobic oxidation of methane in a continuous high-pressure bioreactor.BMC Microbiology, 11, 137. |
117 | ZoBell CE, Anderson DQ (1936) Vertical distribution of bacteria in marine sediments.AAPG Bulletin, 20, 258-269. |
[1] | 姜熠辉, 刘岳, 曾旭, 林喆滢, 王楠, 彭吉豪, 曹玲, 曾聪. 东海六个国家级海洋保护区鱼类多样性和连通性[J]. 生物多样性, 2024, 32(6): 24128-. |
[2] | 田瑜, 李俊生. 《昆明-蒙特利尔全球生物多样性框架》“3030”目标的内涵及实现路径分析[J]. 生物多样性, 2024, 32(6): 24086-. |
[3] | 连佳丽, 陈婧, 杨雪琴, 赵莹, 罗叙, 韩翠, 赵雅欣, 李建平. 荒漠草原植物多样性和微生物多样性对降水变化的响应[J]. 生物多样性, 2024, 32(6): 24044-. |
[4] | 马碧玉. 印度《生物多样性法》修订述要及对我国完善生物多样性保护法制的启示[J]. 生物多样性, 2024, 32(5): 23412-. |
[5] | 蔡颖莉, 朱洪革, 李家欣. 中国生物多样性保护政策演进、主要措施与发展趋势[J]. 生物多样性, 2024, 32(5): 23386-. |
[6] | 艾妍雨, 胡海霞, 沈婷, 莫雨轩, 杞金华, 宋亮. 附生维管植物多样性及其与宿主特征的相关性: 以哀牢山中山湿性常绿阔叶林为例[J]. 生物多样性, 2024, 32(5): 24072-. |
[7] | 鄢德奎. 中国生物多样性保护政策的共同要素、不足和优化建议[J]. 生物多样性, 2024, 32(5): 23293-. |
[8] | 赵富伟, 李颖硕, 陈慧. 新时期我国生物多样性法制建设思考[J]. 生物多样性, 2024, 32(5): 24027-. |
[9] | 刘荆州, 钱易鑫, 张燕雪丹, 崔凤. 基于潜在迪利克雷分布(LDA)模型的旗舰物种范式研究进展与启示[J]. 生物多样性, 2024, 32(4): 23439-. |
[10] | 吴乐婕, 刘泽康, 田星, 张群, 李博, 吴纪华. 海三棱藨草基因型多样性对种群营养生长和繁殖策略的影响[J]. 生物多样性, 2024, 32(4): 23478-. |
[11] | 李雪萌, 蒋际宝, 张曾鲁, 刘晓静, 王亚利, 吴宜钊, 李银生, 邱江平, 赵琦. 宝天曼国家级自然保护区蚯蚓物种多样性及其影响因素[J]. 生物多样性, 2024, 32(4): 23352-. |
[12] | 郝操, 吴东辉, 莫凌梓, 徐国良. 越冬动物肠道微生物多样性及功能研究进展[J]. 生物多样性, 2024, 32(3): 23407-. |
[13] | 刘海鸥, 杜乐山, 刘文慧, 李子圆, 潘丽波, 刘蕾. 全球生物多样性框架基金管理政策分析与启示[J]. 生物多样性, 2024, 32(3): 23334-. |
[14] | 魏嘉欣, 姜治国, 杨林森, 熊欢欢, 金胶胶, 罗方林, 李杰华, 吴浩, 徐耀粘, 乔秀娟, 魏新增, 姚辉, 余辉亮, 杨敬元, 江明喜. 湖北神农架中亚热带山地落叶阔叶林25 ha动态监测样地群落物种组成与结构特征[J]. 生物多样性, 2024, 32(3): 23338-. |
[15] | 何智荣, 吴思雨, 时莹莹, 王雨婷, 江艺欣, 张春娜, 赵娜, 王苏盆. 壶菌感染对两栖动物种群影响的研究现状与挑战[J]. 生物多样性, 2024, 32(2): 23274-. |
阅读次数 | ||||||
全文 |
|
|||||
摘要 |
|
|||||
备案号:京ICP备16067583号-7
Copyright © 2022 版权所有 《生物多样性》编辑部
地址: 北京香山南辛村20号, 邮编:100093
电话: 010-62836137, 62836665 E-mail: biodiversity@ibcas.ac.cn