Biodiv Sci ›› 2025, Vol. 33 ›› Issue (1): 24241. DOI: 10.17520/biods.2024241 cstr: 32101.14.biods.2024241
• Original Papers: Genetic Diversity • Previous Articles Next Articles
Hong Deng1,2, Zhanyou Zhong1,2, Chunni Kou2, Shuli Zhu2, Yuefei Li2, Yuguo Xia2, Zhi Wu2, Jie Li2,*(), Weitao Chen2,*(
)(
)
Received:
2024-06-17
Accepted:
2024-08-06
Online:
2025-01-20
Published:
2024-09-20
Contact:
* E-mail: Supported by:
Hong Deng, Zhanyou Zhong, Chunni Kou, Shuli Zhu, Yuefei Li, Yuguo Xia, Zhi Wu, Jie Li, Weitao Chen. Population genetic structure and evolutionary history of Hemibagrus guttatus based on mitochondrial genomes[J]. Biodiv Sci, 2025, 33(1): 24241.
河流 River | 采集地 Sampling sites | 样本量 Sample size | 经纬度 Locality |
---|---|---|---|
南盘江 Nanpanjiang (NPJ) | 西林 Xiling (XL) | 7 | 24˚39′ N/104˚28′ E |
柳江 Liujiang (LJ) | 宜州 Yizhou (YZ) | 8 | 24˚50′ N/108˚60′ E |
柳江 Liujiang (LJ) | 柳州 Liuzhou (LZZ) | 2 | 24˚31′ N/109˚42′ E |
柳江 Liujiang (LJ) | 柳城 Liucheng (LC) | 8 | 24˚65′ N/109˚26′ E |
桂江 Guijiang (GJ) | 昭平 Zhaoping (ZP) | 2 | 24˚17′ N/110˚80′ E |
桂江 Guijiang (GJ) | 平乐 Pingle (PL) | 4 | 24˚62′ N/110˚62′ E |
东江 Dongjiang (DJ) | 古竹 Guzhu (GZ) | 4 | 23˚51′ N/114˚70′ E |
东江 Dongjiang (DJ) | 惠州 Huizhou (HZ) | 2 | 23˚11′ N/114˚41′ E |
贺江 Hejiang (HEJ) | 南丰 Nanfeng (NF) | 5 | 23˚44′ N/111˚47′ E |
北江 Beijiang (BJ) | 韶关 Shaoguan (SG) | 4 | 24˚81′ N/113˚59′ E |
北江 Beijiang (BJ) | 连州 Lianzhou (LZ) | 8 | 24˚78′ N/112˚37′ E |
北江 Beijiang (BJ) | 西牛 Xiniu (XN) | 14 | 24˚17′ N/113˚11′ E |
红水河 Hongshuihe (HSH) | 都安 Du’an (DA) | 5 | 23˚93′ N/108˚10′ E |
郁江 Yujiang (YJ) | 龙州 Longzhou (LLZ) | 4 | 22˚34′ N/106˚85′ E |
郁江 Yujiang (YJ) | 隆安 Long’an (LA) | 3 | 23˚17′ N/107˚69′ E |
黔江 Qianjiang (QJ) | 桂平 Guiping (GP) | 7 | 23˚39′ N/110˚07′ E |
韩江 Hanjiang (HJ) | 梅州 Meizhou (MZ) | 16 | 24˚29′ N/116˚11′ E |
韩江 Hanjiang (HJ) | 蕉岭 Jiaoling (JL) | 4 | 24˚65′ N/116˚17′ E |
韩江 Hanjiang (HJ) | 上杭 Shanghang (SH) | 4 | 25˚04′ N/116˚42′ E |
总计 Total | 111 |
Table 1 Sampling information of Hemibagrus guttatus samples
河流 River | 采集地 Sampling sites | 样本量 Sample size | 经纬度 Locality |
---|---|---|---|
南盘江 Nanpanjiang (NPJ) | 西林 Xiling (XL) | 7 | 24˚39′ N/104˚28′ E |
柳江 Liujiang (LJ) | 宜州 Yizhou (YZ) | 8 | 24˚50′ N/108˚60′ E |
柳江 Liujiang (LJ) | 柳州 Liuzhou (LZZ) | 2 | 24˚31′ N/109˚42′ E |
柳江 Liujiang (LJ) | 柳城 Liucheng (LC) | 8 | 24˚65′ N/109˚26′ E |
桂江 Guijiang (GJ) | 昭平 Zhaoping (ZP) | 2 | 24˚17′ N/110˚80′ E |
桂江 Guijiang (GJ) | 平乐 Pingle (PL) | 4 | 24˚62′ N/110˚62′ E |
东江 Dongjiang (DJ) | 古竹 Guzhu (GZ) | 4 | 23˚51′ N/114˚70′ E |
东江 Dongjiang (DJ) | 惠州 Huizhou (HZ) | 2 | 23˚11′ N/114˚41′ E |
贺江 Hejiang (HEJ) | 南丰 Nanfeng (NF) | 5 | 23˚44′ N/111˚47′ E |
北江 Beijiang (BJ) | 韶关 Shaoguan (SG) | 4 | 24˚81′ N/113˚59′ E |
北江 Beijiang (BJ) | 连州 Lianzhou (LZ) | 8 | 24˚78′ N/112˚37′ E |
北江 Beijiang (BJ) | 西牛 Xiniu (XN) | 14 | 24˚17′ N/113˚11′ E |
红水河 Hongshuihe (HSH) | 都安 Du’an (DA) | 5 | 23˚93′ N/108˚10′ E |
郁江 Yujiang (YJ) | 龙州 Longzhou (LLZ) | 4 | 22˚34′ N/106˚85′ E |
郁江 Yujiang (YJ) | 隆安 Long’an (LA) | 3 | 23˚17′ N/107˚69′ E |
黔江 Qianjiang (QJ) | 桂平 Guiping (GP) | 7 | 23˚39′ N/110˚07′ E |
韩江 Hanjiang (HJ) | 梅州 Meizhou (MZ) | 16 | 24˚29′ N/116˚11′ E |
韩江 Hanjiang (HJ) | 蕉岭 Jiaoling (JL) | 4 | 24˚65′ N/116˚17′ E |
韩江 Hanjiang (HJ) | 上杭 Shanghang (SH) | 4 | 25˚04′ N/116˚42′ E |
总计 Total | 111 |
Fig. 1 Map of sample sites of Hemibagrus guttatus populations (a), phylogenetic tree (b) and haplotype network (c). In Figure a, the solid cycles indicate sample sites; the black and red fonts represent the abbreviations of sample sites and the river sections, respectively. In Figure b, the values in brackets indicate the divergence time, the values at left and right of slash represent the Bayesian posterior probability and support values of Maximum likelihood tree, respectively. In Figure c, the size of circle represents haplotype frequency and the numbers represent mutation steps. Sublineages I-1 and I-2 demarcate distinct evolutionary subdivisions, population codes refer to Table 1.
采样点 Sampling site | 样本大小 Sample size | 单倍型数 Number of haplotype | 单倍型多样性 Haplotype diversity | 核苷酸多样性 Nucleotide diversity | 中性检测 Neutrality test | |
---|---|---|---|---|---|---|
Tajima’s D | Fu’s Fs | |||||
南盘江 NPJ | 7 | 3 | 0.667 (± 0.160) | 0.0004 (± 0.0001) | -0.367 | 3.708 |
柳江 LJ | 18 | 17 | 0.993 (± 0.021) | 0.0018 (± 0.0003) | -0.607 | -2.697 |
桂江 GJ | 6 | 6 | 1.000 (± 0.096) | 0.0005 (± 0.0001) | -0.644 | -1.522 |
东江 DJ | 6 | 6 | 1.000 (± 0.096) | 0.0005 (± 0.0001) | -0.315 | -1.522 |
贺江 HEJ | 5 | 5 | 1.000 (± 0.126) | 0.0006 (± 0.0001) | -0.770 | -0.542 |
北江 BJ | 27 | 15 | 0.942 (± 0.027) | 0.0004 (± 0.0001) | -1.707* | -3.177 |
红水河 HSH | 5 | 5 | 1.000 (± 0.126) | 0.0007 (± 0.0001) | -0.393 | -0.338 |
郁江 YJ | 7 | 7 | 1.000 (± 0.076) | 0.0007 (± 0.0001) | -0.957 | -1.528 |
黔江 QJ | 7 | 7 | 1.000 (± 0.076) | 0.0011 (± 0.0003) | -1.487* | -0.754 |
珠江 ZJ | 87 | 59 | 1.000 (± 0.003) | 0.0011 (± 0.0002) | -0.805 | -0.930 |
韩江 HJ | 24 | 4 | 0.641 (± 0.076) | 0.0002 (± 0.0002) | 1.526 | 3.312 |
总计 Total | 111 | 63 | 1.000 (± 0.003) | 0.002 (± 0.0005) | -0.986 | 2.243 |
Table 2 Detection of number of haplotype, haplotype diversity, nucleotide diversity and neutrality test of Hemibagrus guttatus. Population codes see Table 1.
采样点 Sampling site | 样本大小 Sample size | 单倍型数 Number of haplotype | 单倍型多样性 Haplotype diversity | 核苷酸多样性 Nucleotide diversity | 中性检测 Neutrality test | |
---|---|---|---|---|---|---|
Tajima’s D | Fu’s Fs | |||||
南盘江 NPJ | 7 | 3 | 0.667 (± 0.160) | 0.0004 (± 0.0001) | -0.367 | 3.708 |
柳江 LJ | 18 | 17 | 0.993 (± 0.021) | 0.0018 (± 0.0003) | -0.607 | -2.697 |
桂江 GJ | 6 | 6 | 1.000 (± 0.096) | 0.0005 (± 0.0001) | -0.644 | -1.522 |
东江 DJ | 6 | 6 | 1.000 (± 0.096) | 0.0005 (± 0.0001) | -0.315 | -1.522 |
贺江 HEJ | 5 | 5 | 1.000 (± 0.126) | 0.0006 (± 0.0001) | -0.770 | -0.542 |
北江 BJ | 27 | 15 | 0.942 (± 0.027) | 0.0004 (± 0.0001) | -1.707* | -3.177 |
红水河 HSH | 5 | 5 | 1.000 (± 0.126) | 0.0007 (± 0.0001) | -0.393 | -0.338 |
郁江 YJ | 7 | 7 | 1.000 (± 0.076) | 0.0007 (± 0.0001) | -0.957 | -1.528 |
黔江 QJ | 7 | 7 | 1.000 (± 0.076) | 0.0011 (± 0.0003) | -1.487* | -0.754 |
珠江 ZJ | 87 | 59 | 1.000 (± 0.003) | 0.0011 (± 0.0002) | -0.805 | -0.930 |
韩江 HJ | 24 | 4 | 0.641 (± 0.076) | 0.0002 (± 0.0002) | 1.526 | 3.312 |
总计 Total | 111 | 63 | 1.000 (± 0.003) | 0.002 (± 0.0005) | -0.986 | 2.243 |
韩江 HJ | 南盘江 NPJ | 柳江 LJ | 桂江 GJ | 东江 DJ | 贺江 HEJ | 北江 BJ | 红水河 HSH | 郁江 YJ | 黔江 QJ | |
---|---|---|---|---|---|---|---|---|---|---|
韩江 HJ | 1.01% | 1.03% | 1.01% | 1.01% | 1.02% | 1.13% | 1.02% | 1.02% | 1.01% | |
南盘江 NPJ | 0.978 | 0.13% | 0.04% | 0.05% | 0.04% | 0.20% | 0.05% | 0.06% | 0.07% | |
柳江 LJ | 0.913 | 0.111 | 0.14% | 0.13% | 0.14% | 0.29% | 0.15% | 0.14% | 0.15% | |
桂江 GJ | 0.976 | 0.000 | 0.072 | 0.05% | 0.05% | 0.20% | 0.06% | 0.06% | 0.08% | |
东江 DJ | 0.976 | 0.206 | 0.070 | 0.098 | 0.06% | 0.21% | 0.06% | 0.06% | 0.08% | |
贺江 HEJ | 0.976 | 0.000 | 0.055 | 0.000 | 0.086 | 0.21% | 0.06% | 0.07% | 0.08% | |
北江 BJ | 0.970 | 0.150 | 0.185 | 0.010 | 0.116 | 0.071 | 0.22% | 0.22% | 0.24% | |
红水河 HSH | 0.974 | 0.026 | 0.077 | 0.000 | 0.130 | 0.000 | 0.172 | 0.07% | 0.09% | |
郁江 YJ | 0.974 | 0.126 | 0.083 | 0.047 | 0.026 | 0.041 | 0.120 | 0.091 | 0.09% | |
黔江 QJ | 0.962 | 0.017 | 0.017 | 0.000 | 0.028 | 0.000 | 0.137 | 0.000 | 0.000 |
Table 3 Pairwise population F-statistics values (FST, below diagonal) and genetic distance (above diagonal) of Hemibagrus guttatus
韩江 HJ | 南盘江 NPJ | 柳江 LJ | 桂江 GJ | 东江 DJ | 贺江 HEJ | 北江 BJ | 红水河 HSH | 郁江 YJ | 黔江 QJ | |
---|---|---|---|---|---|---|---|---|---|---|
韩江 HJ | 1.01% | 1.03% | 1.01% | 1.01% | 1.02% | 1.13% | 1.02% | 1.02% | 1.01% | |
南盘江 NPJ | 0.978 | 0.13% | 0.04% | 0.05% | 0.04% | 0.20% | 0.05% | 0.06% | 0.07% | |
柳江 LJ | 0.913 | 0.111 | 0.14% | 0.13% | 0.14% | 0.29% | 0.15% | 0.14% | 0.15% | |
桂江 GJ | 0.976 | 0.000 | 0.072 | 0.05% | 0.05% | 0.20% | 0.06% | 0.06% | 0.08% | |
东江 DJ | 0.976 | 0.206 | 0.070 | 0.098 | 0.06% | 0.21% | 0.06% | 0.06% | 0.08% | |
贺江 HEJ | 0.976 | 0.000 | 0.055 | 0.000 | 0.086 | 0.21% | 0.06% | 0.07% | 0.08% | |
北江 BJ | 0.970 | 0.150 | 0.185 | 0.010 | 0.116 | 0.071 | 0.22% | 0.22% | 0.24% | |
红水河 HSH | 0.974 | 0.026 | 0.077 | 0.000 | 0.130 | 0.000 | 0.172 | 0.07% | 0.09% | |
郁江 YJ | 0.974 | 0.126 | 0.083 | 0.047 | 0.026 | 0.041 | 0.120 | 0.091 | 0.09% | |
黔江 QJ | 0.962 | 0.017 | 0.017 | 0.000 | 0.028 | 0.000 | 0.137 | 0.000 | 0.000 |
Fig. 2 Bayesian skyline plots of the overall population (a), the Pearl River population (c) and the Hanjiang River population (e) basedon the evolutionary rate of 0.62%, the overall population (b), the Pearl River population (d) and the Hanjiang River population (f) based on the evolutionary rate of 0.87%
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