| [1] |
Al Arab M, Zu Siederdissen CH, Tout K, Sahyoun AH, Stadler PF, Bernt M (2017) Accurate annotation of protein-coding genes in mitochondrial genomes. Molecular Phylogenetics and Evolution, 106, 209-216.
DOI
URL
|
| [2] |
Bernt M, Donath A, Jühling F, Externbrink F, Florentz C, Fritzsch G, Pütz J, Middendorf M, Stadler PF (2013) MITOS: Improved de novo metazoan mitochondrial genome annotation. Molecular Phylogenetics and Evolution, 69, 313-319.
DOI
URL
|
| [3] |
Boore JL (1999) Animal mitochondrial genomes. Nucleic Acids Research, 27, 1767-1780.
PMID
|
| [4] |
Burger G, Gray MW, Lang BF (2003) Mitochondrial genomes: Anything goes. Trends in Genetics, 19, 709-716.
DOI
URL
|
| [5] |
Chen J, Wang Y, Jiang LY, Qiao GX (2017) Mitochondrial genome sequences effectively reveal deep branching events in aphids (Insecta: Hemiptera: Aphididae). Zoologica Scripta, 46, 706-717.
DOI
URL
|
| [6] |
Dierckxsens N, Mardulyn P, Smits G (2017) NOVOPlasty: de novo assembly of organelle genomes from whole genome data. Nucleic Acids Research, 45, e18.
|
| [7] |
Favret C (2022) Aphid species file, Version 5.0/5.0. http://Aphid.SpeciesFile.org. (accessed on 2022-01-24)
|
| [8] |
Grant JR, Stothard P (2008) The CGView Server: A comparative genomics tool for circular genomes. Nucleic Acids Research, 36, W181-W184.
DOI
URL
|
| [9] |
Kumar S, Stecher G, Tamura K (2016) MEGA7: Molecular evolutionary genetics analysis version 7.0 for bigger datasets. Molecular Biology and Evolution, 33, 1870-1874.
DOI
URL
|
| [10] |
Laslett D, Canbäck B (2008) ARWEN: A program to detect tRNA genes in metazoan mitochondrial nucleotide sequences. Bioinformatics, 24, 172-175.
PMID
|
| [11] |
Li H, Leavengood Jr JM, Chapman EG, Burkhardt D, Song F, Jiang P, Liu JP, Zhou XG, Cai WZ (2017) Mitochondrial phylogenomics of Hemiptera reveals adaptive innovations driving the diversification of true bugs. Proceedings of the Royal Society B: Biological Sciences, 284, 20171223.
|
| [12] |
Liu YQ, Li H, Song F, Zhao YS, Wilson JJ, Cai WZ (2019) Higher-level phylogeny and evolutionary history of Pentatomomorpha (Hemiptera: Heteroptera) inferred from mitochondrial genome sequences. Systematic Entomology, 44, 810-819.
DOI
URL
|
| [13] |
Lorenz R, Bernhart SH, Zu Siederdissen CH, Tafer H, Flamm C, Stadler PF, Hofacker IL (2011) ViennaRNA Package 2.0. Algorithms for Molecular Biology, 6, 26.
|
| [14] |
Ma C, Yang P, Jiang F, Chapuis MP, Shali Y, Sword GA, Kang L (2012) Mitochondrial genomes reveal the global phylogeography and dispersal routes of the migratory locust. Molecular Ecology, 21, 4344-4358.
DOI
URL
|
| [15] |
Mueller RL (2006) Evolutionary rates, divergence dates, and the performance of mitochondrial genes in Bayesian phylogenetic analysis. Systematic Biology, 55, 289-300.
DOI
URL
|
| [16] |
Nass MMK, Nass S (1963) Intramitochondrial fibers with DNA characteristics: I. Fixation and electron staining reactions. The Journal of Cell Biology, 19, 593-611.
DOI
URL
|
| [17] |
Walker BJ, Abeel T, Shea T, Priest M, Abouelliel A, Sakthikumar S, Cuomo CA, Zeng QD, Wortman J, Young SK, Earl AM (2014) Pilon: An integrated tool for comprehensive microbial variant detection and genome assembly improvement. PLoS ONE, 9, e112963.
DOI
URL
|
| [18] |
Wang Y, Huang XL, Qiao GX (2014) The complete mitochondrial genome of Cervaphis quercus (Insecta: Hemiptera: Aphididae: Greenideinae). Insect Science, 21, 278-290.
DOI
URL
|
| [19] |
Wilson AC, Cann RL, Carr SM, George M, Gyllensten UB, Helm-Bychowski KM, Higuchi RG, Palumbi SR, Prager EM, Sage RD, Stoneking M (1985) Mitochondrial DNA and two perspectives on evolutionary genetics. Biological Journal of the Linnean Society, 26, 375-400.
DOI
URL
|
| [20] |
Wolstenholme DR (1992) Animal mitochondrial DNA: Structure and evolution. International Review of Cytology, 141, 173-216.
|
| [21] |
Zhang B, Ma C, Edwards O, Fuller S, Kang L (2014) The mitochondrial genome of the Russian wheat aphid Diuraphis noxia: Large repetitive sequences between trnE and trnF in aphids. Gene, 533, 253-260.
DOI
PMID
|
| [22] |
Zhang D, Gao FL, Jakovlić I, Zou H, Zhang J, Li WX, Wang GT (2020) PhyloSuite: An integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies. Molecular Ecology Resources, 20, 348-355.
DOI
PMID
|
| [23] |
Zhang H, Liu Q, Lu CC, Deng J, Huang XL (2021) The first complete mitochondrial genome of Lachninae species and comparative genomics provide new insights into the evolution of gene rearrangement and the repeat region. Insects, 12, 55.
DOI
URL
|
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