Biodiv Sci ›› 2023, Vol. 31 ›› Issue (8): 22692. DOI: 10.17520/biods.2022692
• Original Papers: Animal Diversity • Previous Articles Next Articles
Tingwei Dong1, Meiling Huang1, Xu Wei1, Shuo Ma1, Qu Yue1, Wenli Liu1, Jiaxin Zheng1, Gang Wang1, Rui Ma1, Youzhong Ding1, Shunqi Bo2, Zhenghuan Wang1,3,4,*()
Received:
2022-12-23
Accepted:
2023-03-29
Online:
2023-08-20
Published:
2023-08-14
Contact:
*E-mail: zhwang@bio.ecnu.edu.cn
Tingwei Dong, Meiling Huang, Xu Wei, Shuo Ma, Qu Yue, Wenli Liu, Jiaxin Zheng, Gang Wang, Rui Ma, Youzhong Ding, Shunqi Bo, Zhenghuan Wang. Potential spatial distribution pattern and landscape connectivity of Pelophylax plancyi in Shanghai, China[J]. Biodiv Sci, 2023, 31(8): 22692.
Fig. 1 The map of 15 sampling sites of Pelophylax plancyi in Shanghai. CP, Century Park; BG, Shanghai Botanical Garden; GQ, Gongqing Forest Park; CS, Chenshan Botanical Garden; SN, Songnan Country Park; PJ, Pujiang Country Park; XY, Fengxian Xiangyang Village; WG, Pudong Wuzao Port; JB, Jiabei Country Park; QX, Qingxi Country Park; LX, Langxia Country Park; BF, Bay Country Park; LG, Nanhui Lingang New City; PS, Changxing Island Panshi Town; CJ, Chongming Island Chenjia Town.
采样点 Sampling site | 分布区域 Region | 城市化水平 Urbanization degree | 生境适宜 均值 Mean of habitat suitability | GPS坐标数 Number of GPS positions | 样本量(只) Sampling size | |
---|---|---|---|---|---|---|
微卫星位点分析样本Samples for SSR analysis | 单核苷酸多肽位点分析样本 Samples for SNP analysis | |||||
世纪公园 Century Park (CP) | 中心城区 Central urban area | 0.734 | 0.236 | 15 | 32 | 10 |
上海植物园 Shanghai Botanical Garden (BG) | 中心城区 Central urban area | 0.773 | 0.147 | 10 | 28 | 10 |
共青森林公园 Gongqing Forest Park (GQ) | 中心城区 Central urban area | 0.705 | 0.135 | 7 | 16 | 10 |
辰山植物园 Chenshan Botanical Garden (CS) | 近郊 Suburb | 0.393 | 0.472 | - | 36 | 10 |
松南郊野公园 Songnan Country Park (SN) | 近郊 Suburb | 0.371 | 0.417 | 34 | 35 | 10 |
浦江郊野公园 Pujiang Country Park (PJ) | 近郊 Suburb | 0.469 | 0.526 | 12 | 15 | 10 |
奉贤向阳村 Fengxian Xiangyang Village (XY) | 近郊 Suburb | 0.412 | 0.372 | - | 25 | 10 |
浦东五灶港 Pudong Wuzao Port (WG) | 近郊 Suburb | 0.489 | 0.410 | - | 34 | 10 |
嘉北郊野公园 Jiabei Country Park (JB) | 远郊 Outer suburb | 0.530 | 0.455 | 14 | 17 | 10 |
青西郊野公园 Qingxi Country Park (QX) | 远郊 Outer suburb | 0.217 | 0.469 | 31 | 33 | 10 |
廊下郊野公园 Langxia Country Park (LX) | 远郊 Outer suburb | 0.313 | 0.463 | 25 | 39 | 10 |
海湾郊野公园 Bay Country Park (BF) | 远郊 Outer suburb | 0.262 | 0.519 | 3 | 11 | 10 |
南汇临港新城 Nanhui Lingang New City (LG) | 远郊 Outer suburb | 0.530 | 0.353 | - | 28 | 10 |
长兴岛潘石镇 Changxing Island Panshi Town (PS) | 远郊 Outer suburb | 0.085 | 0.280 | 14 | 30 | 10 |
崇明岛陈家镇 Chongming Island Chenjia Town (CJ) | 远郊 Outer suburb | 0.570 | 0.281 | - | 28 | 10 |
总计 Total | 165 | 407 | 150 |
Table 1 The detail information of 15 sampling sites and sample sizes of the two types of molecular markers for Pelophylax plancyi in Shanghai
采样点 Sampling site | 分布区域 Region | 城市化水平 Urbanization degree | 生境适宜 均值 Mean of habitat suitability | GPS坐标数 Number of GPS positions | 样本量(只) Sampling size | |
---|---|---|---|---|---|---|
微卫星位点分析样本Samples for SSR analysis | 单核苷酸多肽位点分析样本 Samples for SNP analysis | |||||
世纪公园 Century Park (CP) | 中心城区 Central urban area | 0.734 | 0.236 | 15 | 32 | 10 |
上海植物园 Shanghai Botanical Garden (BG) | 中心城区 Central urban area | 0.773 | 0.147 | 10 | 28 | 10 |
共青森林公园 Gongqing Forest Park (GQ) | 中心城区 Central urban area | 0.705 | 0.135 | 7 | 16 | 10 |
辰山植物园 Chenshan Botanical Garden (CS) | 近郊 Suburb | 0.393 | 0.472 | - | 36 | 10 |
松南郊野公园 Songnan Country Park (SN) | 近郊 Suburb | 0.371 | 0.417 | 34 | 35 | 10 |
浦江郊野公园 Pujiang Country Park (PJ) | 近郊 Suburb | 0.469 | 0.526 | 12 | 15 | 10 |
奉贤向阳村 Fengxian Xiangyang Village (XY) | 近郊 Suburb | 0.412 | 0.372 | - | 25 | 10 |
浦东五灶港 Pudong Wuzao Port (WG) | 近郊 Suburb | 0.489 | 0.410 | - | 34 | 10 |
嘉北郊野公园 Jiabei Country Park (JB) | 远郊 Outer suburb | 0.530 | 0.455 | 14 | 17 | 10 |
青西郊野公园 Qingxi Country Park (QX) | 远郊 Outer suburb | 0.217 | 0.469 | 31 | 33 | 10 |
廊下郊野公园 Langxia Country Park (LX) | 远郊 Outer suburb | 0.313 | 0.463 | 25 | 39 | 10 |
海湾郊野公园 Bay Country Park (BF) | 远郊 Outer suburb | 0.262 | 0.519 | 3 | 11 | 10 |
南汇临港新城 Nanhui Lingang New City (LG) | 远郊 Outer suburb | 0.530 | 0.353 | - | 28 | 10 |
长兴岛潘石镇 Changxing Island Panshi Town (PS) | 远郊 Outer suburb | 0.085 | 0.280 | 14 | 30 | 10 |
崇明岛陈家镇 Chongming Island Chenjia Town (CJ) | 远郊 Outer suburb | 0.570 | 0.281 | - | 28 | 10 |
总计 Total | 165 | 407 | 150 |
Fig. 3 Schematic diagram of the contribution rate of environmental factors to the potential distribution of Pelophylax plancyi (a) and the response of environmental factors to the potential distribution (b-d)
CP | BG | GQ | CS | SN | PJ | XY | WG | JB | QX | LX | BF | LG | PS | CJ | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
CP | - | 8.921 | 10.583 | 7.182 | 6.970 | 7.395 | 7.299 | 5.691 | 8.779 | 8.835 | 7.912 | 6.766 | 6.943 | 12.184 | 19.107 |
BG | 13.092 | - | 13.819 | 7.759 | 7.633 | 8.225 | 8.681 | 7.829 | 9.858 | 9.460 | 8.627 | 8.260 | 8.816 | 14.709 | 21.486 |
GQ | 11.502 | 21.893 | - | 11.321 | 11.353 | 12.329 | 12.160 | 10.787 | 11.826 | 13.005 | 12.284 | 11.578 | 11.779 | 14.775 | 21.914 |
CS | 38.632 | 26.020 | 44.400 | - | 3.223 | 6.173 | 6.094 | 5.651 | 5.873 | 4.033 | 4.085 | 5.543 | 6.352 | 12.049 | 18.753 |
SN | 38.143 | 25.329 | 47.017 | 14.861 | - | 5.695 | 5.540 | 5.228 | 6.495 | 4.721 | 3.481 | 4.975 | 5.877 | 12.014 | 18.738 |
PJ | 20.314 | 13.272 | 31.584 | 30.861 | 23.018 | - | 5.935 | 5.435 | 8.586 | 7.787 | 6.666 | 5.698 | 6.356 | 12.952 | 19.726 |
XY | 30.711 | 27.821 | 42.069 | 43.910 | 32.645 | 15.007 | - | 4.826 | 8.526 | 7.674 | 6.447 | 4.485 | 5.339 | 12.598 | 19.361 |
WG | 18.445 | 22.859 | 28.488 | 46.662 | 39.897 | 16.884 | 16.375 | - | 7.768 | 7.261 | 6.154 | 4.269 | 4.300 | 11.210 | 18.016 |
JB | 38.090 | 34.177 | 34.380 | 32.553 | 45.087 | 46.981 | 61.885 | 55.283 | - | 7.615 | 7.402 | 7.972 | 8.546 | 12.503 | 19.053 |
QX | 55.905 | 43.777 | 60.139 | 18.119 | 29.195 | 48.796 | 61.102 | 64.778 | 38.533 | - | 5.428 | 7.115 | 7.946 | 13.715 | 20.421 |
LX | 60.891 | 48.251 | 69.988 | 31.233 | 22.971 | 43.667 | 48.216 | 59.805 | 63.727 | 33.378 | - | 5.858 | 6.782 | 12.937 | 19.659 |
BF | 41.736 | 40.070 | 52.729 | 55.036 | 42.461 | 27.280 | 12.290 | 24.799 | 74.170 | 71.550 | 54.098 | - | 4.068 | 11.904 | 18.654 |
LG | 40.987 | 46.146 | 49.087 | 68.159 | 58.566 | 37.302 | 26.395 | 23.480 | 78.639 | 86.020 | 74.354 | 22.382 | - | 11.801 | 18.530 |
PS | 24.212 | 36.120 | 14.477 | 58.697 | 61.387 | 44.372 | 52.475 | 36.883 | 43.953 | 73.881 | 84.346 | 61.639 | 52.830 | - | 13.680 |
CJ | 39.235 | 51.594 | 30.122 | 74.281 | 76.911 | 58.910 | 65.210 | 48.951 | 56.961 | 89.118 | 99.844 | 72.958 | 60.178 | 15.649 | - |
Table 2 Pairwise Euclidean distance (below diagonal) and resistance distance (above diagonal) between 15 local populations of Pelophylax plancyi
CP | BG | GQ | CS | SN | PJ | XY | WG | JB | QX | LX | BF | LG | PS | CJ | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
CP | - | 8.921 | 10.583 | 7.182 | 6.970 | 7.395 | 7.299 | 5.691 | 8.779 | 8.835 | 7.912 | 6.766 | 6.943 | 12.184 | 19.107 |
BG | 13.092 | - | 13.819 | 7.759 | 7.633 | 8.225 | 8.681 | 7.829 | 9.858 | 9.460 | 8.627 | 8.260 | 8.816 | 14.709 | 21.486 |
GQ | 11.502 | 21.893 | - | 11.321 | 11.353 | 12.329 | 12.160 | 10.787 | 11.826 | 13.005 | 12.284 | 11.578 | 11.779 | 14.775 | 21.914 |
CS | 38.632 | 26.020 | 44.400 | - | 3.223 | 6.173 | 6.094 | 5.651 | 5.873 | 4.033 | 4.085 | 5.543 | 6.352 | 12.049 | 18.753 |
SN | 38.143 | 25.329 | 47.017 | 14.861 | - | 5.695 | 5.540 | 5.228 | 6.495 | 4.721 | 3.481 | 4.975 | 5.877 | 12.014 | 18.738 |
PJ | 20.314 | 13.272 | 31.584 | 30.861 | 23.018 | - | 5.935 | 5.435 | 8.586 | 7.787 | 6.666 | 5.698 | 6.356 | 12.952 | 19.726 |
XY | 30.711 | 27.821 | 42.069 | 43.910 | 32.645 | 15.007 | - | 4.826 | 8.526 | 7.674 | 6.447 | 4.485 | 5.339 | 12.598 | 19.361 |
WG | 18.445 | 22.859 | 28.488 | 46.662 | 39.897 | 16.884 | 16.375 | - | 7.768 | 7.261 | 6.154 | 4.269 | 4.300 | 11.210 | 18.016 |
JB | 38.090 | 34.177 | 34.380 | 32.553 | 45.087 | 46.981 | 61.885 | 55.283 | - | 7.615 | 7.402 | 7.972 | 8.546 | 12.503 | 19.053 |
QX | 55.905 | 43.777 | 60.139 | 18.119 | 29.195 | 48.796 | 61.102 | 64.778 | 38.533 | - | 5.428 | 7.115 | 7.946 | 13.715 | 20.421 |
LX | 60.891 | 48.251 | 69.988 | 31.233 | 22.971 | 43.667 | 48.216 | 59.805 | 63.727 | 33.378 | - | 5.858 | 6.782 | 12.937 | 19.659 |
BF | 41.736 | 40.070 | 52.729 | 55.036 | 42.461 | 27.280 | 12.290 | 24.799 | 74.170 | 71.550 | 54.098 | - | 4.068 | 11.904 | 18.654 |
LG | 40.987 | 46.146 | 49.087 | 68.159 | 58.566 | 37.302 | 26.395 | 23.480 | 78.639 | 86.020 | 74.354 | 22.382 | - | 11.801 | 18.530 |
PS | 24.212 | 36.120 | 14.477 | 58.697 | 61.387 | 44.372 | 52.475 | 36.883 | 43.953 | 73.881 | 84.346 | 61.639 | 52.830 | - | 13.680 |
CJ | 39.235 | 51.594 | 30.122 | 74.281 | 76.911 | 58.910 | 65.210 | 48.951 | 56.961 | 89.118 | 99.844 | 72.958 | 60.178 | 15.649 | - |
空间距离 Spatial distance | FST | FST/(1-FST) | ||
---|---|---|---|---|
SSR | SNP | SSR | SNP | |
欧氏距离 Euclidean distance | 0.030 | 0.005 | 0.031 | 0.005 |
阻力距离 Resistance distance | 0.593** | 0.420* | 0.598** | 0.419* |
Table 3 Mantel test for isolation by distance and isolation by resistance
空间距离 Spatial distance | FST | FST/(1-FST) | ||
---|---|---|---|---|
SSR | SNP | SSR | SNP | |
欧氏距离 Euclidean distance | 0.030 | 0.005 | 0.031 | 0.005 |
阻力距离 Resistance distance | 0.593** | 0.420* | 0.598** | 0.419* |
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