Biodiv Sci ›› 2023, Vol. 31 ›› Issue (6): 22586. DOI: 10.17520/biods.2022586
• Original Papers: Animal Diversity • Previous Articles Next Articles
Zhenjie Zhan1, Chao Zhang2, Minhao Chen1, Jiadong Wang1, Aihua Fu1, Yuwei Fan1, Xiaofeng Luan1,*()
Received:
2022-10-18
Accepted:
2023-02-05
Online:
2023-06-20
Published:
2023-04-18
Contact:
* E-mail: luanxiaofeng@bjfu.edu.cn
Zhenjie Zhan, Chao Zhang, Minhao Chen, Jiadong Wang, Aihua Fu, Yuwei Fan, Xiaofeng Luan. DNA metabarcoding-based winter diet analysis of Eurasian otter (Lutra lutra) in the northern Greater Khingan Mountains[J]. Biodiv Sci, 2023, 31(6): 22586.
引物 Primer | 扩增区域 Target | 引物序列 Primer sequence (5'-3') | 产物长度 Product length | 参考文献 Reference |
---|---|---|---|---|
LLCBL/R | Cytb | F: AAAGCCACCCTGACACGATT | 80 bp | Thomsen et al, |
R: AGCAGGTGGATTGTTGCTAGTG | ||||
12S V5 | 12S rRNA | F: TAGAACAGGCTCCTCTAG | 98 bp | Riaz et al, |
R: TTAGATACCCCACTATGC | ||||
OBS1 | - | CTATGCTCAGCCCTAAACATAGATAGCTTACATAACAAAACTATCTGC-C3 | - | Kumari et al, |
HomoB | - | CTATGCTTAGCCCTAAACCTCAACAGTTAAATCAACAAAACTGCT-C3 | - | De Barba et al, |
BF2/BR1 | COI | F: GCHCCHGAYATRGCHTTYCC | 322 bp | Elbrecht & Leese, |
R: ARYATDGTRATDGCHCCDGC |
Table 1 Sequences of the primers used in the study
引物 Primer | 扩增区域 Target | 引物序列 Primer sequence (5'-3') | 产物长度 Product length | 参考文献 Reference |
---|---|---|---|---|
LLCBL/R | Cytb | F: AAAGCCACCCTGACACGATT | 80 bp | Thomsen et al, |
R: AGCAGGTGGATTGTTGCTAGTG | ||||
12S V5 | 12S rRNA | F: TAGAACAGGCTCCTCTAG | 98 bp | Riaz et al, |
R: TTAGATACCCCACTATGC | ||||
OBS1 | - | CTATGCTCAGCCCTAAACATAGATAGCTTACATAACAAAACTATCTGC-C3 | - | Kumari et al, |
HomoB | - | CTATGCTTAGCCCTAAACCTCAACAGTTAAATCAACAAAACTGCT-C3 | - | De Barba et al, |
BF2/BR1 | COI | F: GCHCCHGAYATRGCHTTYCC | 322 bp | Elbrecht & Leese, |
R: ARYATDGTRATDGCHCCDGC |
物种类别 Species taxa | 出现样品数 Occurrence | 相对出现频率 %RFO | 相对序列丰度 %RRA | 生物类群 Biome |
---|---|---|---|---|
杂色杜父鱼 Cottus poecilopus | 30 | 19.35 | 27.32 | 鱼类 Fish |
黑龙江林蛙 Rana amurensis | 24 | 15.48 | 21.73 | 蛙类 Frog |
克氏杜父鱼 Cottus czerskii | 15 | 9.68 | 16.47 | 鱼类 Fish |
东北林蛙 Rana dybowskii | 4 | 2.58 | 7.21 | 蛙类 Frog |
须鳅属一种 Barbatula sp. | 13 | 8.39 | 5.47 | 鱼类 Fish |
真鱥 Phoxinus phoxinus | 18 | 11.61 | 5.09 | 鱼类 Fish |
湖大吻鱥 Rhynchocypris percnurus | 10 | 6.45 | 4.65 | 鱼类 Fish |
黑龙江茴鱼 Thymallus arcticus | 8 | 5.16 | 2.96 | 鱼类 Fish |
拉氏大吻鱥 Rhynchocypris lagowskii | 8 | 5.16 | 2.81 | 鱼类 Fish |
黑龙江中杜父鱼 Mesocottus haitej | 2 | 1.29 | 1.54 | 鱼类 Fish |
茴鱼属一种 Thymallus sp. | 4 | 2.58 | 1.43 | 鱼类 Fish |
七鳃鳗属一种 Lampetra sp. | 4 | 2.58 | 1.08 | 鱼类 Fish |
葛氏鲈塘鳢 Perccottus glenii | 5 | 3.23 | 0.81 | 鱼类 Fish |
江鳕 Lota lota | 4 | 2.58 | 0.66 | 鱼类 Fish |
杜父鱼属一种 Cottus sp. | 3 | 1.94 | 0.39 | 鱼类 Fish |
大吻鱥属一种 Rhynchocypris sp. | 2 | 1.29 | 0.33 | 鱼类 Fish |
花鳅属一种 Cobitis sp. | 1 | 0.65 | 0.05 | 鱼类 Fish |
Table 2 Results of diet analysis in 12S rRNA region (N = 35) of Eurasian otter fecal samples in the northern Greater Khingan Mountains. %RFO, Relative frequency of occurrence; %RRA, Relative read abundance.
物种类别 Species taxa | 出现样品数 Occurrence | 相对出现频率 %RFO | 相对序列丰度 %RRA | 生物类群 Biome |
---|---|---|---|---|
杂色杜父鱼 Cottus poecilopus | 30 | 19.35 | 27.32 | 鱼类 Fish |
黑龙江林蛙 Rana amurensis | 24 | 15.48 | 21.73 | 蛙类 Frog |
克氏杜父鱼 Cottus czerskii | 15 | 9.68 | 16.47 | 鱼类 Fish |
东北林蛙 Rana dybowskii | 4 | 2.58 | 7.21 | 蛙类 Frog |
须鳅属一种 Barbatula sp. | 13 | 8.39 | 5.47 | 鱼类 Fish |
真鱥 Phoxinus phoxinus | 18 | 11.61 | 5.09 | 鱼类 Fish |
湖大吻鱥 Rhynchocypris percnurus | 10 | 6.45 | 4.65 | 鱼类 Fish |
黑龙江茴鱼 Thymallus arcticus | 8 | 5.16 | 2.96 | 鱼类 Fish |
拉氏大吻鱥 Rhynchocypris lagowskii | 8 | 5.16 | 2.81 | 鱼类 Fish |
黑龙江中杜父鱼 Mesocottus haitej | 2 | 1.29 | 1.54 | 鱼类 Fish |
茴鱼属一种 Thymallus sp. | 4 | 2.58 | 1.43 | 鱼类 Fish |
七鳃鳗属一种 Lampetra sp. | 4 | 2.58 | 1.08 | 鱼类 Fish |
葛氏鲈塘鳢 Perccottus glenii | 5 | 3.23 | 0.81 | 鱼类 Fish |
江鳕 Lota lota | 4 | 2.58 | 0.66 | 鱼类 Fish |
杜父鱼属一种 Cottus sp. | 3 | 1.94 | 0.39 | 鱼类 Fish |
大吻鱥属一种 Rhynchocypris sp. | 2 | 1.29 | 0.33 | 鱼类 Fish |
花鳅属一种 Cobitis sp. | 1 | 0.65 | 0.05 | 鱼类 Fish |
Fig. 2 Vertebrate of Eurasian otter feces (N = 35) in northern Greater Khingan Mountains at family level. (a) Relative frequency of occurrence; (b) Relative read abundance.
物种类别 Species taxa | 出现样品数 Occurrence | 相对出现频率 %RFO | 相对序列丰度 %RRA | 生物类群 Biome |
---|---|---|---|---|
蜻蜓目 Odonata | 8 | 20.51 | 33.86 | 昆虫 Insect |
毛翅目 Trichoptera | 9 | 23.08 | 25.92 | 昆虫 Insect |
襀翅目 Plecoptera | 7 | 17.95 | 18.74 | 昆虫 Insect |
蜉蝣目 Ephemeroptera | 8 | 20.51 | 15.87 | 昆虫 Insect |
双翅目 Diptera | 7 | 17.95 | 5.60 | 昆虫 Insect |
Table 3 Results of diet analysis in COI region (N = 12) of Eurasian otter fecal samples in the northern Greater Khingan Mountains. %RFO, Relative frequency of occurrence; %RRA, Relative read abundance.
物种类别 Species taxa | 出现样品数 Occurrence | 相对出现频率 %RFO | 相对序列丰度 %RRA | 生物类群 Biome |
---|---|---|---|---|
蜻蜓目 Odonata | 8 | 20.51 | 33.86 | 昆虫 Insect |
毛翅目 Trichoptera | 9 | 23.08 | 25.92 | 昆虫 Insect |
襀翅目 Plecoptera | 7 | 17.95 | 18.74 | 昆虫 Insect |
蜉蝣目 Ephemeroptera | 8 | 20.51 | 15.87 | 昆虫 Insect |
双翅目 Diptera | 7 | 17.95 | 5.60 | 昆虫 Insect |
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