Biodiv Sci ›› 2019, Vol. 27 ›› Issue (3): 249-256.DOI: 10.17520/biods.2018195
• Special Feature: Analysis of Wildlife Camera-Trapping Data • Previous Articles Next Articles
Xiao Wenhong1,Shu Zufei2,Chen Lijun1,Yao Wutao3,Ma Yong3,Zhang Yingming2,Xiao Zhishu1,4,*()
Received:
2018-07-16
Accepted:
2018-12-19
Online:
2019-03-20
Published:
2019-03-20
Contact:
Xiao Zhishu
Xiao Wenhong,Shu Zufei,Chen Lijun,Yao Wutao,Ma Yong,Zhang Yingming,Xiao Zhishu. Using occupancy models in wildlife camera-trapping monitoring and the study case[J]. Biodiv Sci, 2019, 27(3): 249-256.
模型 Model | K | AIC | ΔAIC | AIC权重 AIC weight | Ψ | p |
---|---|---|---|---|---|---|
p(海拔范围)ψ(海拔范围) p(elevation range)ψ(elevation range) | 4 | 267.61 | 0 | 0.30 | 0.55 | 0.13 |
p(海拔范围, EVI)ψ (海拔范围) p(elevation range, EVI)ψ(elevation range) | 5 | 268.99 | 1.38 | 0.15 | 0.55 | 0.12 |
p(海拔范围)ψ(海拔范围, EVI) p(elevation range)ψ(elevation range, EVI) | 5 | 269.11 | 1.51 | 0.14 | 0.58 | 0.13 |
模型平均 Model average | 0.56 | 0.13 |
Table 1 Summary of model selection results for masked palm civet occupancy in the Guangdong Chebaling National Nature Reserve, showing estimated occupancy probability (ψ) and detectability (p) for the models with ΔAIC ≤ 2
模型 Model | K | AIC | ΔAIC | AIC权重 AIC weight | Ψ | p |
---|---|---|---|---|---|---|
p(海拔范围)ψ(海拔范围) p(elevation range)ψ(elevation range) | 4 | 267.61 | 0 | 0.30 | 0.55 | 0.13 |
p(海拔范围, EVI)ψ (海拔范围) p(elevation range, EVI)ψ(elevation range) | 5 | 268.99 | 1.38 | 0.15 | 0.55 | 0.12 |
p(海拔范围)ψ(海拔范围, EVI) p(elevation range)ψ(elevation range, EVI) | 5 | 269.11 | 1.51 | 0.14 | 0.58 | 0.13 |
模型平均 Model average | 0.56 | 0.13 |
模型成分 Model component | 协变量 Covariates | 估计值 Estimate | 标准误 SE | P |
---|---|---|---|---|
占域 Occupancy | 截距 Intercept | 0.38 | 0.85 | 0.66 |
海拔范围 Elevation range | -1.82 | 1.02 | 0.07 | |
EVI | 0.06 | 0.23 | 0.78 | |
探测 Detection | 截距 Intercept | -2.45 | 0.26 | < 0.001 |
海拔范围 Elevation range | 1.29 | 0.30 | < 0.001 | |
EVI | 0.04 | 0.12 | 0.75 |
Table 2 Covariates influencing masked palm civet occupancy and detectability according to β-coefficients and associated standard errors (SE)
模型成分 Model component | 协变量 Covariates | 估计值 Estimate | 标准误 SE | P |
---|---|---|---|---|
占域 Occupancy | 截距 Intercept | 0.38 | 0.85 | 0.66 |
海拔范围 Elevation range | -1.82 | 1.02 | 0.07 | |
EVI | 0.06 | 0.23 | 0.78 | |
探测 Detection | 截距 Intercept | -2.45 | 0.26 | < 0.001 |
海拔范围 Elevation range | 1.29 | 0.30 | < 0.001 | |
EVI | 0.04 | 0.12 | 0.75 |
Fig. 1 The effect of covariates (elevation range, EVI) on masked palm civet occupancy probability and detectability under top models. EVI, Enhanced vegetation index.
1 |
Ahumada JA, Silva CE, Gajapersad K, Hallam C, Hurtado J, Martin E, McWilliam A, Mugerwa B, O’Brien T, Rovero F ( 2011) Community structure and diversity of tropical forest mammals: Data from a global camera trap network. Philosophical Transactions of the Royal Society B: Biological Sciences, 366, 2703-2711.
DOI URL PMID |
2 |
Alexander JS, Shi K, Tallents LA, Riordan P ( 2015) On the high trail: Examining determinants of site use by the endangered snow leopard Panthera uncia in Qilianshan, China. Oryx, 50, 231-238.
DOI URL |
3 |
Bailey LL, Simons TR, Pollock KH ( 2004) Spatial and temporal variation in detection probability of Plethodon salamanders using the robust capture-recapture design. Journal of Wildlife Management, 68, 14-24.
DOI URL |
4 |
Bu HL, Wang F, McShea WJ, Lu Z, Wang DJ, Li S ( 2016) Spatial co-occurrence and activity patterns of mesocarnivores in the temperate forests of Southwest China. PLoS ONE, 11, e0164271.
DOI URL PMID |
5 | Burnham KP, Anderson DR ( 2004) Model Selection and Multimodel Inference: A Practical Information-Theoretic Approach, 2nd edn. Springer, New York. |
6 |
Burton AC, Neilson E, Moreira D, Ladle A, Steenweg R, Fisher JT, Bayne E, Boutin S, Stephens P ( 2015) Wildlife camera trapping: A review and recommendations for linking surveys to ecological processes. Journal of Applied Ecology, 52, 675-685.
DOI URL |
7 |
Clare JDJ, Anderson EM, Macfarland DM ( 2015) Predicting bobcat abundance at a landscape scale and evaluating occupancy as a density index in central Wisconsin. Journal of Wildlife Management, 79, 469-480.
DOI URL |
8 |
Dorazio RM, Royle JA ( 2005) Estimating size and composition of biological communities by modeling the occurrence of species. Journal of the American Statistical Association, 100, 389-398.
DOI URL |
9 |
Dorazio RM, Royle JA, Soderstrom B, Glimskar A ( 2006) Estimating species richness and accumulation by modeling species occurrence and detectability. Ecology, 87, 842-854.
DOI URL PMID |
10 | Efford MG, Dawson DK ( 2012) Occupancy in continuous habitat. Ecosphere, 3, 1-15. |
11 |
Eraud C, Boutin JM, Roux D, Faivre B ( 2007) Spatial dynamics of an invasive bird species assessed using robust design occupancy analysis: The case of the Eurasian collared dove (Streptopelia decaocto) in France. Journal of Biogeography, 34, 1077-1086.
DOI URL |
12 |
Falke JA, Bailey LL, Fausch KD, Bestgen KR ( 2012) Colonization and extinction in dynamic habitats: An occupancy approach for a Great Plains stream fish assemblage. Ecology, 93, 858-867.
DOI URL PMID |
13 |
Ferraz G, Nichols JD, Hines JE, Stouffer PC, Bierregaard RO, Lovejoy TE ( 2007) A large-scale deforestation experiment: Effects of patch area and isolation on Amazon birds. Science, 315, 238-241.
DOI URL |
14 | Fiske IJ, Chandler RB ( 2011) Unmarked: An R package for fitting hierarchical models of wildlife occurrence and abundance. Journal of Statistical Software, 43, 1-23. |
15 |
Guillera-Arroita G ( 2011) Impact of sampling with replacement in occupancy studies with spatial replication. Methods in Ecology and Evolution, 2, 401-406.
DOI URL PMID |
16 |
Karanth KU, Gopalaswamy AM, Kumar NS, Vaidyanathan S, Nichols JD, MacKenzie DI ( 2011) Monitoring carnivore populations at the landscape scale: Occupancy modelling of tigers from sign surveys. Journal of Applied Ecology, 48, 1048-1056.
DOI URL |
17 |
Kéry M, Guillera-Arroita G, Lahoz-Monfort JJ ( 2013) Analysing and mapping species range dynamics using occupancy models. Journal of Biogeography, 40, 1463-1474.
DOI URL |
18 |
Kéry M, Royle JA ( 2008) Hierarchical Bayes estimation of species richness and occupancy in spatially replicated surveys. Journal of Applied Ecology, 45, 589-598.
DOI URL |
19 |
Kéry M, Royle JA ( 2009) Inference about species richness and community structure using species-specific occupancy models in the national Swiss breeding bird survey MHB. In: Demographic Processes in Marked Populations (eds Thomson DL, Cooch EG, Conroy MJ), pp. 639-656. Springer, New York.
DOI URL |
20 |
Li S, Wang DJ, Xiao ZS, Li XH, Wang TM, Feng LM, Wang Y ( 2014) Camera-trapping in wildlife research and conservation in China: Review and outlook. Biodiversity Science, 22, 685-695. (in Chinese with English abstract)
DOI URL |
[ 李晟, 王大军, 肖治术, 李欣海, 王天明, 冯利民, 王云 ( 2014) 红外相机技术在我国野生动物研究与保护中的应用与前景. 生物多样性, 22, 685-695.]
DOI URL |
|
21 |
Linden DW, Fuller AK, Royle JA, Hare MP ( 2017) Examining the occupancy-density relationship for a low-density carnivore. Journal of Applied Ecology, 54, 2043-2052.
DOI URL |
22 |
Linkie M, Dinata Y, Nugroho A, Haidir IA ( 2007) Estimating occupancy of a data deficient mammalian species living in tropical rainforests: Sun bears in the Kerinci Seblat region, Sumatra. Biological Conservation, 137, 20-27.
DOI URL |
23 | MacKenzie DI, Nichols JD, Royle JA, Pollock KH, Bailey LL, Hines JE ( 2006) Occupancy Estimation and Modeling: Inferring Patterns and Dynamics of Species Occurrence. Academic Press, San Diego. |
24 |
MacKenzie DI, Bailey LL ( 2004) Assessing the fit of site-occupancy models. Journal of Agricultural Biological and Environmental Statistics, 9, 300-318.
DOI URL |
25 |
MacKenzie DI, Bailey LL, Nichols JD ( 2004) Investigating species co-occurrence patterns when species are detected imperfectly. Journal of Animal Ecology, 73, 546-555.
DOI URL |
26 |
MacKenzie DI, Nichols JD, Hines JE, Knutson MG, Franklin AB ( 2003) Estimating site occupancy, colonization, and local extinction when a species is detected imperfectly. Ecology, 84, 2200-2207.
DOI URL |
27 |
MacKenzie DI, Nichols JD, Lachman GB, Droege S, Royle JA, Langtimm CA ( 2002) Estimating site occupancy rates when detection probabilities are less than one. Ecology, 83, 2248-2255.
DOI URL |
28 | MacKenzie DI, Nichols JD, Royle JA, Pollock KH, Bailey LL, Hines JE ( 2017) Occupancy Estimation and Modeling: Inferring Patterns and Dynamics of Species Occurrence, 2nd edn. Academic Press, San Diego. |
29 |
MacKenzie DI, Royle JA ( 2005) Designing occupancy studies: General advice and allocating survey effort. Journal of Applied Ecology, 42, 1105-1114.
DOI URL |
30 |
Miller DA, Brehme CS, Hines JE, Nichols JD, Fisher RN ( 2012) Joint estimation of habitat dynamics and species interactions: Disturbance reduces co-occurrence of non-native predators with an endangered toad. Journal of Animal Ecology, 81, 1288-1297.
DOI URL PMID |
31 |
Miller DA, Nichols JD, McClintock BT, Grant EHC, Bailey LL, Weir LA ( 2011) Improving occupancy estimation when two types of observational error occur: Non-detection and species misidentification. Ecology, 92, 1422-1428.
DOI URL PMID |
32 |
Nichols JD, Bailey LL, Talancy NW, Grant EHC, Gilbert AT, Annand EM, Husband TP, Hines JE ( 2008) Multi-scale occupancy estimation and modelling using multiple detection methods. Journal of Applied Ecology, 45, 1321-1329.
DOI URL |
33 |
O’Connell AF, Talancy NW, Bailey LL, Sauer JR, Cook R, Gilbert AT ( 2006) Estimating site occupancy and detection probability parameters for meso- and large mammals in a coastal ecosystem. Journal of Wildlife Management, 70, 1625-1633.
DOI URL |
34 |
Peterman WE, Rittenhouse TAG, Earl JE, Semlitsch RD ( 2013) Demographic network and multi-season occupancy modeling of Rana sylvatica reveal spatial and temporal patterns of population connectivity and persistence. Landscape Ecology, 28, 1601-1613.
DOI URL |
35 |
Pilliod DS, Goldberg CS, Arkle RS, Waits LP ( 2013) Estimating occupancy and abundance of stream amphibians using environmental DNA from filtered water samples. Canadian Journal of Fisheries and Aquatic Sciences, 70, 1123-1130.
DOI URL |
36 |
Rovero F, Martin E, Rosa M, Ahumada JA, Spitale D ( 2014) Estimating species richness and modelling habitat preferences of tropical forest mammals from camera trap data. PLoS ONE, 9, e103300.
DOI URL PMID |
37 |
Royle JA, Kéry M ( 2007) A Bayesian state-space formulation of dynamic occupancy models. Ecology, 88, 1813-1823.
DOI URL |
38 |
Ruiz-Gutiérrez V, Zipkin EF, Dhondt AA ( 2010) Occupancy dynamics in a tropical bird community: Unexpectedly high forest use by birds classified as non-forest species. Journal of Applied Ecology, 47, 621-630.
DOI URL |
39 |
Russell RE, Royle JA, Saab VA, Lehmkuhl JF, Block WM, Sauer JR ( 2009) Modeling the effects of environmental disturbance on wildlife communities: Avian responses to prescribed fire. Ecological Applications, 19, 1253-1263.
DOI URL PMID |
40 |
Santulli G, Palazon S, Melero Y, Gosalbez J, Lambin X ( 2014) Multi-season occupancy analysis reveals large scale competitive exclusion of the critically endangered European mink by the invasive non-native American mink in Spain. Biological Conservation, 176, 21-29.
DOI URL |
41 |
Scotson L, Johnston LR, Iannarilli F, Wearn OR, Mohd-Azlan J, Wong WM, Gray TNE, Dinata Y, Suzuki A, Willard CE, Frechette J, Loken B, Steinmetz R, MoΒbrucker AM, Clements GR, Fieberg J, Rowcliffe M, De Angelo C ( 2017) Best practices and software for the management and sharing of camera trap data for small and large scales studies. Remote Sensing in Ecology and Conservation, 3, 158-172.
DOI URL |
42 |
Shannon G, Lewis JS, Gerber BD ( 2014) Recommended survey designs for occupancy modelling using motion-activated cameras: Insights from empirical wildlife data. PeerJ, 2, e532.
DOI URL PMID |
43 |
Sollmann R, Furtado MM, Hofer H, Jacomo ATA, Torres NM, Silveira L ( 2012) Using occupancy models to investigate space partitioning between two sympatric large predators, the jaguar and puma in central Brazil. Mammalian Biology, 77, 41-46.
DOI URL |
44 |
Steenweg R, Hebblewhite M, Whittington J, Mckelvey K, Lukacs P ( 2018) Sampling scales define occupancy and the occupancy-abundance relationship in animals. Ecology, 99, 172-183.
DOI URL PMID |
45 |
Tobler MW, Zúñiga A, Carrillo-Percastegui SE, Powell GVN, Lukacs P ( 2015) Spatiotemporal hierarchical modelling of species richness and occupancy using camera trap data. Journal of Applied Ecology, 52, 413-421.
DOI URL |
46 |
Wan YQ, Wu J, Mo YM, Wu ZJ, Li GF, Xu HG ( 2017) Distribution and site occupancy analysis of 11 species of amphibians in Guangxi. Journal of Ecology and Rural Environment, 33, 281-287. (in Chinese with English abstract)
DOI URL |
[ 万雅琼, 吴军, 莫运明, 武正军, 李桂芬, 徐海根 ( 2017) 广西11种两栖动物的分布及占域分析. 生态与农村环境学报, 33, 281-287.]
DOI URL |
|
47 |
Wang F, McShea WJ, Wang DJ, Li S ( 2015 a) Shared resources between giant panda and sympatric wild and domestic mammals. Biological Conservation, 186, 319-325.
DOI URL |
48 |
Wang TM, Royle JA, Smith JLD, Zou L, Lu XY, Li T, Yang HT, Li ZL, Feng RN, Bian YJ, Feng LM, Ge JP ( 2018) Living on the edge: Opportunities for Amur tiger recovery in China. Biological Conservation, 217, 269-279.
DOI URL |
49 |
Wang Y, Allen ML, Wilmers CC ( 2015 b) Mesopredator spatial and temporal responses to large predators and human development in the Santa Cruz Mountains of California. Biological Conservation, 190, 23-33.
DOI URL |
50 | Wearn OR, Glover-Kapfer P ( 2017) Camera-trapping for Conservation: A Guide to Best-Practices. WWF-UK, Woking, United Kingdom. |
51 |
White GC, Burnham KP ( 1999) Program MARK: Survival estimation from populations of marked animals. Bird Study, 46, 120-139.
DOI URL |
52 |
Zipkin EF, DeWan A, Royle JA ( 2009) Impacts of forest fragmentation on species richness: A hierarchical approach to community modelling. Journal of Applied Ecology, 46, 815-822.
DOI URL |
[1] | Yaqiong Wan Jiaqi Li Xingwen Yang Sheng Li Haigen Xu. China mammal diversity observation network (China BON-Mammal) platform based on camera-trapping [J]. Biodiv Sci, 2020, 28(9): 0-0. |
[2] | Zongji Fan Xuejun Ouyang Yaqiong Wan Wenhong Xiao Wengui Xie Shikun Ou Xijie Deng Zhongliang Huang Zhishu Xiao. Species inventory of mammals and birds using camera trapping in Zhaoqing forest region, Guangdong Province [J]. Biodiv Sci, 2020, 28(9): 0-0. |
[3] | Ding Jia Peiyun Li Xiang Zhao Chen Cheng Lingyun Xiao Zhi Lü. Camera Trap Database of Sanjiangyuan Community-based Monitoring Platform [J]. Biodiv Sci, 2020, 28(9): 0-0. |
[4] | . Wildlife camera-trapping database of the Middle Qinling Mountains [J]. Biodiv Sci, 2020, 28(9): 0-0. |
[5] | Tianming Wang Limin Feng Haitao Yang Lei Bao Jianping Ge. Long-term Tiger-Leopard Observation Network (TLON) based on camera traps in Northeast China [J]. Biodiv Sci, 2020, 28(9): 0-0. |
[6] | . Transboundary Animal Diversity Monitoring Platform of China’s southern Yunnan and Southeast Asia [J]. Biodiv Sci, 2020, 28(9): 0-0. |
[7] | Jia Li Xiulei Wang Mingwei Yang Daxiang Chen Xiaoju Wang Ping Luo Fang Liu Yadong Xue Guangliang Li Yuguang Zhang Yu Zhang Diqiang Li. Construction progress of camera-trapping database from the nature reserves biological specimen resources sharing sub-platform [J]. Biodiv Sci, 2020, 28(9): 0-0. |
[8] | Xiaoli Shen Jianping Yu Sheng Li Huiyun Xiao Mingzhang Liu Xiaonan Chen Shengwen Chen Keping Ma. Progress overview of the camera-trapping monitoring platform of Qianjiangyuan National Park, Zhejiang Province [J]. Biodiv Sci, 2020, 28(9): 0-0. |
[9] | William J.McShea Xiaoli Shen Fang Liu Tianming Wang Zhishu Xiao Sheng Li. China’s wildlife camera-trap monitoring need a unified standard [J]. Biodiv Sci, 2020, 28(9): 0-0. |
[10] | Zhongmei Lü, Zhenliang Chen. Revision of the Law of the People’s Republic of China on the Protection of Wildlife: Background, issues and suggestions [J]. Biodiv Sci, 2020, 28(5): 550-557. |
[11] | Zhijian Liang, Jiabei Hu, Sifan Hu, Jingjing Zhao, Kaiwen Zhou, Yunbo Jiao, Cheng Huang, Xia He, Anita Kar Yan Wan, Lishu Li, Fangyuan Hua, Tien Ming Lee. Understanding and changing wildlife consumption behavior from a multidisciplinary perspective [J]. Biodiv Sci, 2020, 28(5): 606-620. |
[12] | Yan Zeng, Xiaoge Ping, Fuwen Wei. A conceptual framework and definitions for the term “wild animal” [J]. Biodiv Sci, 2020, 28(5): 541-549. |
[13] | Zhishu Xiao, Libiao Zhang, Lei Xu, Qihai Zhou, Xiuxiang Meng, Chuan Yan, Gang Chang. Problems and countermeasures in the surveillance and research of wildlife epidemics based on mammals in China [J]. Biodiv Sci, 2020, 28(5): 566-578. |
[14] | Binbin V Li. Creating synergy between biodiversity conservation and human health — One Health [J]. Biodiv Sci, 2020, 28(5): 596-605. |
[15] | Xiangying Shi, Xiaochuan Zhang, Lingyun Xiao, Binbin V Li, Jinmei Liu, Fangyi Yang, Xiang Zhao, Chen Cheng, Zhi Lü. Public perception of wildlife consumption and trade during the COVID-19 outbreak [J]. Biodiv Sci, 2020, 28(5): 630-643. |
Viewed | ||||||
Full text |
|
|||||
Abstract |
|
|||||
Copyright ©2021 Biodiversity Science
Editorial Office of Biodiversity Science, 20 Nanxincun, Xiangshan, Beijing 100093, China
Tel: 86-10-62836137, 62836665 E-mail: biodiversity@ibcas.ac.cn