
Biodiv Sci ›› 2014, Vol. 22 ›› Issue (3): 293-301. DOI: 10.3724/SP.J.1003.2014.13269 cstr: 32101.14.SP.J.1003.2014.13269
Special Issue: 生物多样性信息学专题(II)
• Biodiversity Informatics • Previous Articles Next Articles
Xiaolei Huang*(
), Gexia Qiao*(
)
Received:2013-12-30
Accepted:2014-05-12
Online:2014-05-20
Published:2014-06-04
Contact:
Huang Xiaolei,Qiao Gexia
Xiaolei Huang, Gexia Qiao. Sharing and publishing of biodiversity data: recent trends and future suggestions[J]. Biodiv Sci, 2014, 22(3): 293-301.
Fig. 1 A sketch of the data sharing flow, including main participants and determining factors in data sharing. Funding agency spans each stage of the data flow.
Fig. 3 The conceptual relationship between ‘data sharing’ and ‘data publishing’. Data sharing includes data sharing without publishing (e.g. E-mail, removable disk) and data sharing through publishing (public database, data journal, personal website), i.e., data publishing.
| 数据保存机构 Data repository | 数据类型和说明 Data type and notes | 元数据 Metadata | 可引用对象 Citable object | 开放程度 Access |
|---|---|---|---|---|
| GenBank http://www.ncbi.nlm.nih.gov/genbank | DNA序列; 标准格式 DNA sequences; standard format | 要求 Required | 序列号 Accession number | 开放 Open |
| Barcode of Life Database (BOLD) http://www.boldsystems.org | DNA条形码及相关数据; 标准格式 DNA barcodes; standard format | 要求 Required | 序列号 Accession number | 开放 Open |
| Global Biodiversity Information Facility (GBIF) http://www.gbif.org | 物种分布数据; 标准格式 Species occurrence data; standard format | 要求 Required | 无 No | 开放 Open |
| TreeBASE http://www.treebase.org | 系统发育树及相关数据 Phylogenetic trees and related data | 建议 Suggested | 无 No | 开放 Open |
| Dryad http://datadryad.org | 生态进化出版物相关数据; 无标准格式 Ecology & evolution data associated with publications; no standard format | 建议 Suggested | 数字对象标识 DOI | 开放 Open |
| figshare http://figshare.com | 任何类型的数据; 无标准格式 Any type of data; no standard format | 可选 Optional | 数字对象标识 DOI | 根据情况 Variable |
| 中国国家标本资源共享平台 China National Specimen Information Infrastructure http://www.nsii.org.cn | 标本数据 Specimen data | 可选 Optional | 无 No | 根据情况 Variable |
Table 1 Some popular data repositories archiving biodiversity data. More repositories refer to Databib (http://databib.org)
| 数据保存机构 Data repository | 数据类型和说明 Data type and notes | 元数据 Metadata | 可引用对象 Citable object | 开放程度 Access |
|---|---|---|---|---|
| GenBank http://www.ncbi.nlm.nih.gov/genbank | DNA序列; 标准格式 DNA sequences; standard format | 要求 Required | 序列号 Accession number | 开放 Open |
| Barcode of Life Database (BOLD) http://www.boldsystems.org | DNA条形码及相关数据; 标准格式 DNA barcodes; standard format | 要求 Required | 序列号 Accession number | 开放 Open |
| Global Biodiversity Information Facility (GBIF) http://www.gbif.org | 物种分布数据; 标准格式 Species occurrence data; standard format | 要求 Required | 无 No | 开放 Open |
| TreeBASE http://www.treebase.org | 系统发育树及相关数据 Phylogenetic trees and related data | 建议 Suggested | 无 No | 开放 Open |
| Dryad http://datadryad.org | 生态进化出版物相关数据; 无标准格式 Ecology & evolution data associated with publications; no standard format | 建议 Suggested | 数字对象标识 DOI | 开放 Open |
| figshare http://figshare.com | 任何类型的数据; 无标准格式 Any type of data; no standard format | 可选 Optional | 数字对象标识 DOI | 根据情况 Variable |
| 中国国家标本资源共享平台 China National Specimen Information Infrastructure http://www.nsii.org.cn | 标本数据 Specimen data | 可选 Optional | 无 No | 根据情况 Variable |
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