Biodiv Sci ›› 2016, Vol. 24 ›› Issue (8): 888-895. DOI: 10.17520/biods.2016079
• Original Papers: Animal Diversity • Previous Articles Next Articles
Jing Zhang1,4, Yuan Li2, Na Song1, Longshan Lin2, Tianxiang Gao3,*()
Received:
2016-03-22
Accepted:
2016-05-13
Online:
2016-08-20
Published:
2016-09-02
Contact:
Gao Tianxiang
Jing Zhang, Yuan Li, Na Song, Longshan Lin, Tianxiang Gao. Species identification and phylogenetic relationship of Thryssa species in the coastal waters of China[J]. Biodiv Sci, 2016, 24(8): 888-895.
种名 Species | 本研究 This study | 引用序列号 Accession no. | ||
---|---|---|---|---|
地点 Sampling sites | 采样时间 Sampling time | 编号 Number | ||
赤鼻棱鳀 T. kammalensis | 福建省晋江市 Jinjiang, Fujian | 2014.3 | CB1-CB5 | EF607590-607596, JN813096, JQ738607-738609, KF951618, KP260469, KP260453 |
中颌棱鳀 T. mystax | 山东省东营市 Dongying, Shandong | 2009.10 | ZH1-ZH5 | ——— |
杜氏棱鳀 T. dussumieri | 福建省漳州市 Zhangzhou, Fujian | 2013.5 | DS1-DS5 | JX983287-983289 |
长颌棱鳀 T. setirostris | 福建省泉州市 Quanzhou, Fujian | 2013.5 | CH1-CH5 | EF607597-607599, EU541324, JF494684-494688 |
汉氏棱鳀 T. hamiltonii | 福建省晋江市 Jinjiang, Fujian | 2013.11 | HS1-HS5 | EF607588, EF607589, JQ681498, EU148567-148570 |
黄吻棱鳀 T. vitrirostris | 广东省江门市 Jiangmen, Guangdong | 2013.3 | HW1-HW5 | JF494689-494693 |
Table 1 Information of Thryssa samples and sequences in this study
种名 Species | 本研究 This study | 引用序列号 Accession no. | ||
---|---|---|---|---|
地点 Sampling sites | 采样时间 Sampling time | 编号 Number | ||
赤鼻棱鳀 T. kammalensis | 福建省晋江市 Jinjiang, Fujian | 2014.3 | CB1-CB5 | EF607590-607596, JN813096, JQ738607-738609, KF951618, KP260469, KP260453 |
中颌棱鳀 T. mystax | 山东省东营市 Dongying, Shandong | 2009.10 | ZH1-ZH5 | ——— |
杜氏棱鳀 T. dussumieri | 福建省漳州市 Zhangzhou, Fujian | 2013.5 | DS1-DS5 | JX983287-983289 |
长颌棱鳀 T. setirostris | 福建省泉州市 Quanzhou, Fujian | 2013.5 | CH1-CH5 | EF607597-607599, EU541324, JF494684-494688 |
汉氏棱鳀 T. hamiltonii | 福建省晋江市 Jinjiang, Fujian | 2013.11 | HS1-HS5 | EF607588, EF607589, JQ681498, EU148567-148570 |
黄吻棱鳀 T. vitrirostris | 广东省江门市 Jiangmen, Guangdong | 2013.3 | HW1-HW5 | JF494689-494693 |
种类 Species | 碱基组成 Nucleotide composition (%) | 单倍型数量 Number of haplotypes | |||
---|---|---|---|---|---|
T(U) | C | A | G | ||
赤鼻棱鳀 T. kammalensis | 31.6 | 25.3 | 25.5 | 17.5 | 1 |
中颌棱鳀 T. mystax | 30.3 | 26.1 | 26.1 | 17.5 | 2 |
杜氏棱鳀 T. dussumieri | 28.4 | 26.2 | 26.6 | 18.8 | 2 |
长颌棱鳀 T. setirostris | 28.8 | 27.1 | 25.3 | 18.9 | 2 |
汉氏棱鳀 T. hamiltonii | 30.3 | 25.1 | 25.0 | 19.6 | 2 |
黄吻棱鳀 T. vitrirostris | 30.3 | 26.1 | 26.1 | 17.5 | 3 |
平均 Average | 29.9 | 26.1 | 25.5 | 18.5 | - |
Table 3 Base composition and number of haplotypes of mitochondrial COI gene segment in six Thryssa species
种类 Species | 碱基组成 Nucleotide composition (%) | 单倍型数量 Number of haplotypes | |||
---|---|---|---|---|---|
T(U) | C | A | G | ||
赤鼻棱鳀 T. kammalensis | 31.6 | 25.3 | 25.5 | 17.5 | 1 |
中颌棱鳀 T. mystax | 30.3 | 26.1 | 26.1 | 17.5 | 2 |
杜氏棱鳀 T. dussumieri | 28.4 | 26.2 | 26.6 | 18.8 | 2 |
长颌棱鳀 T. setirostris | 28.8 | 27.1 | 25.3 | 18.9 | 2 |
汉氏棱鳀 T. hamiltonii | 30.3 | 25.1 | 25.0 | 19.6 | 2 |
黄吻棱鳀 T. vitrirostris | 30.3 | 26.1 | 26.1 | 17.5 | 3 |
平均 Average | 29.9 | 26.1 | 25.5 | 18.5 | - |
组群1 Group 1 | 组群2 Group 2 | 组群3 Group 3 | 组群4 Group 4 | 组群5 Group 5 | 组群6 Group 6 | 组群7 Group 7 | 组群8 Group 8 | 组群9 Group 9 | 组群10 Group 10 | |
---|---|---|---|---|---|---|---|---|---|---|
组群1 Group 1 | 0.001 | 2.83 | 2.75 | 13.58 | 15.75 | 15.25 | 15.33 | 15.08 | 13.92 | 14.50 |
组群2 Group 2 | 0.034 | 0.001 | 4.00 | 14.42 | 15.17 | 14.00 | 14.42 | 15.00 | 15.33 | 15.83 |
组群3 Group 3 | 0.033 | 0.048 | - | 13.58 | 14.50 | 14.92 | 16.75 | 16.17 | 14.83 | 15.50 |
组群4 Group 4 | 0.163 | 0.173 | 0.163 | 0.004 | 15.50 | 16.08 | 17.33 | 14.75 | 16.25 | 16.33 |
组群5 Group 5 | 0.189 | 0.182 | 0.174 | 0.186 | 0.002 | 16.83 | 17.83 | 15.83 | 15.42 | 17.00 |
组群6 Group 6 | 0.183 | 0.168 | 0.179 | 0.193 | 0.202 | 0.001 | 12.25 | 15.50 | 15.50 | 16.33 |
组群7 Group 7 | 0.184 | 0.173 | 0.201 | 0.208 | 0.214 | 0.147 | 0.003 | 14.25 | 15.92 | 16.17 |
组群8 Group 8 | 0.181 | 0.180 | 0.194 | 0.177 | 0.190 | 0.186 | 0.171 | 0.003 | 17.42 | 16.08 |
组群9 Group 9 | 0.167 | 0.184 | 0.178 | 0.195 | 0.185 | 0.186 | 0.191 | 0.209 | - | 13.67 |
组群10 Group 10 | 0.174 | 0.190 | 0.186 | 0.196 | 0.204 | 0.196 | 0.194 | 0.193 | 0.164 | 0.001 |
Table 4 Genetic distances within and among groups, the divergence dates between ten groups based on COI gene
组群1 Group 1 | 组群2 Group 2 | 组群3 Group 3 | 组群4 Group 4 | 组群5 Group 5 | 组群6 Group 6 | 组群7 Group 7 | 组群8 Group 8 | 组群9 Group 9 | 组群10 Group 10 | |
---|---|---|---|---|---|---|---|---|---|---|
组群1 Group 1 | 0.001 | 2.83 | 2.75 | 13.58 | 15.75 | 15.25 | 15.33 | 15.08 | 13.92 | 14.50 |
组群2 Group 2 | 0.034 | 0.001 | 4.00 | 14.42 | 15.17 | 14.00 | 14.42 | 15.00 | 15.33 | 15.83 |
组群3 Group 3 | 0.033 | 0.048 | - | 13.58 | 14.50 | 14.92 | 16.75 | 16.17 | 14.83 | 15.50 |
组群4 Group 4 | 0.163 | 0.173 | 0.163 | 0.004 | 15.50 | 16.08 | 17.33 | 14.75 | 16.25 | 16.33 |
组群5 Group 5 | 0.189 | 0.182 | 0.174 | 0.186 | 0.002 | 16.83 | 17.83 | 15.83 | 15.42 | 17.00 |
组群6 Group 6 | 0.183 | 0.168 | 0.179 | 0.193 | 0.202 | 0.001 | 12.25 | 15.50 | 15.50 | 16.33 |
组群7 Group 7 | 0.184 | 0.173 | 0.201 | 0.208 | 0.214 | 0.147 | 0.003 | 14.25 | 15.92 | 16.17 |
组群8 Group 8 | 0.181 | 0.180 | 0.194 | 0.177 | 0.190 | 0.186 | 0.171 | 0.003 | 17.42 | 16.08 |
组群9 Group 9 | 0.167 | 0.184 | 0.178 | 0.195 | 0.185 | 0.186 | 0.191 | 0.209 | - | 13.67 |
组群10 Group 10 | 0.174 | 0.190 | 0.186 | 0.196 | 0.204 | 0.196 | 0.194 | 0.193 | 0.164 | 0.001 |
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