Biodiv Sci ›› 2013, Vol. 21 ›› Issue (1): 71-79. DOI: 10.3724/SP.J.1003.2013.09138
Special Issue: 物种形成与系统进化
• Orginal Article • Previous Articles Next Articles
Xueqin Wu, Gangbiao Xu*(), Yan Liang, Xiangbao Shen
Received:
2012-07-03
Accepted:
2012-12-18
Online:
2013-01-20
Published:
2013-02-04
Contact:
Xu Gangbiao
Xueqin Wu,Gangbiao Xu,Yan Liang,Xiangbao Shen. Genetic diversity of natural and planted populations of Tsoongiodendron odorum from the Nanling Mountains[J]. Biodiv Sci, 2013, 21(1): 71-79.
种群 Population codes | 地点 Location | 经度 Longitude | 纬度 Latitude | 海拔 Altitude (m) | 样本大小 Sample size |
---|---|---|---|---|---|
自然种群 Natural populations | |||||
弄相山 NXS | 贵州弄相山省级自然保护区 Nongxiangshan Provincial Nature Reserve, Guizhou | 109°12′ E | 25°46′ N | 230 | 21 |
源口 YK | 湖南源口省级自然保护区 Yuankou Provincial Nature Reserve, Hunan | 110°59′ E | 24°58′ N | 610 | 26 |
连山 LS | 广东连山省级自然保护区 Lianshan Provincial Nature Reserve, Guangdong | 112°01′ E | 24°25′ N | 580 | 28 |
南昆山 NKS | 广东南昆山省级自然保护区 Nankunshan Provincial Nature Reserve, Guangdong | 113°52′ E | 23°38′ N | 457 | 32 |
人工种群 Planted populations | |||||
车八岭 CBL | 广东车八岭国家级自然保护区 Chebaling National Nature Reserve, Guangdong | 114°15′ E | 24°43′ N | 350 | 18 |
鼎湖山 DHS | 广东鼎湖山国家级自然保护区 Dinghushan National Nature Reserve, Guangdong | 112°32′ E | 23°10′ N | 245 | 10 |
大顶山 DDS | 广东南岭国家级自然保护区大顶山管理处 Dadingshan Management Office, Nanling Nature Reserve, Guangdong | 113°03′ E | 24°43′ N | 516 | 28 |
Table 1 Collection location and number of individuals tested of Tsoongiodendron odorum
种群 Population codes | 地点 Location | 经度 Longitude | 纬度 Latitude | 海拔 Altitude (m) | 样本大小 Sample size |
---|---|---|---|---|---|
自然种群 Natural populations | |||||
弄相山 NXS | 贵州弄相山省级自然保护区 Nongxiangshan Provincial Nature Reserve, Guizhou | 109°12′ E | 25°46′ N | 230 | 21 |
源口 YK | 湖南源口省级自然保护区 Yuankou Provincial Nature Reserve, Hunan | 110°59′ E | 24°58′ N | 610 | 26 |
连山 LS | 广东连山省级自然保护区 Lianshan Provincial Nature Reserve, Guangdong | 112°01′ E | 24°25′ N | 580 | 28 |
南昆山 NKS | 广东南昆山省级自然保护区 Nankunshan Provincial Nature Reserve, Guangdong | 113°52′ E | 23°38′ N | 457 | 32 |
人工种群 Planted populations | |||||
车八岭 CBL | 广东车八岭国家级自然保护区 Chebaling National Nature Reserve, Guangdong | 114°15′ E | 24°43′ N | 350 | 18 |
鼎湖山 DHS | 广东鼎湖山国家级自然保护区 Dinghushan National Nature Reserve, Guangdong | 112°32′ E | 23°10′ N | 245 | 10 |
大顶山 DDS | 广东南岭国家级自然保护区大顶山管理处 Dadingshan Management Office, Nanling Nature Reserve, Guangdong | 113°03′ E | 24°43′ N | 516 | 28 |
引物 Primer | 序列(5′ to 3′) Sequence(5′ to 3′) | 最适温度 Optimum temperature (℃) | 总条带数 No. of bands | 多态条带数 No. of polymorphic bands | 多态条带百分比 % of polymorphic bands |
---|---|---|---|---|---|
UBC814 | (CT)8A | 51 | 28 | 25 | 89.3 |
UBC815 | (CT)8G | 53 | 21 | 20 | 95.2 |
UBC818 | (CA)8G | 54 | 22 | 19 | 86.4 |
UBC822 | (TC)8A | 53 | 25 | 19 | 76.0 |
UBC824 | (TC)8G | 51 | 25 | 20 | 80.0 |
UBC835 | (AG)8YC | 55 | 23 | 17 | 73.9 |
UBC840 | (GA)8YT | 57 | 25 | 20 | 80.0 |
UBC841 | (GA)8YC | 57 | 26 | 20 | 76.9 |
UBC844 | (CT)8RC | 57 | 21 | 16 | 76.2 |
UBC845 | (CT)8RG | 54 | 18 | 14 | 77.8 |
UBC853 | (TC)8RT | 54 | 18 | 16 | 88.9 |
UBC854 | (TC)8RG | 54 | 23 | 21 | 91.3 |
UBC866 | (CTC)6 | 60 | 23 | 18 | 78.3 |
UBC874 | (CCCT)4 | 55 | 23 | 21 | 91.3 |
UBC879 | (CTTCA)3 | 41 | 22 | 20 | 90.9 |
UBC881 | (GGGTG)3 | 54 | 19 | 15 | 79.0 |
平均 Mean | 22.63 | 18.82 | 83.2 |
Table 2 ISSR primers and their amplification results with 163 Tsoongiodendron odorum individuals
引物 Primer | 序列(5′ to 3′) Sequence(5′ to 3′) | 最适温度 Optimum temperature (℃) | 总条带数 No. of bands | 多态条带数 No. of polymorphic bands | 多态条带百分比 % of polymorphic bands |
---|---|---|---|---|---|
UBC814 | (CT)8A | 51 | 28 | 25 | 89.3 |
UBC815 | (CT)8G | 53 | 21 | 20 | 95.2 |
UBC818 | (CA)8G | 54 | 22 | 19 | 86.4 |
UBC822 | (TC)8A | 53 | 25 | 19 | 76.0 |
UBC824 | (TC)8G | 51 | 25 | 20 | 80.0 |
UBC835 | (AG)8YC | 55 | 23 | 17 | 73.9 |
UBC840 | (GA)8YT | 57 | 25 | 20 | 80.0 |
UBC841 | (GA)8YC | 57 | 26 | 20 | 76.9 |
UBC844 | (CT)8RC | 57 | 21 | 16 | 76.2 |
UBC845 | (CT)8RG | 54 | 18 | 14 | 77.8 |
UBC853 | (TC)8RT | 54 | 18 | 16 | 88.9 |
UBC854 | (TC)8RG | 54 | 23 | 21 | 91.3 |
UBC866 | (CTC)6 | 60 | 23 | 18 | 78.3 |
UBC874 | (CCCT)4 | 55 | 23 | 21 | 91.3 |
UBC879 | (CTTCA)3 | 41 | 22 | 20 | 90.9 |
UBC881 | (GGGTG)3 | 54 | 19 | 15 | 79.0 |
平均 Mean | 22.63 | 18.82 | 83.2 |
种群 Population | 多态条带百分比 % of polymorphic bands | Shannon信息指数 Shannon information index | |
---|---|---|---|
自然种群 Natural populations | |||
弄相山 NXS | 59.4 | 0.2848 | |
源口 YK | 55.0 | 0.2618 | |
连山 LS | 61.9 | 0.2995 | |
南昆山 NKS | 62.2 | 0.2926 | |
总体 Total | 80.9 | 0.3629 | |
人工种群 Planted populations | |||
车八岭 CBL | 47.2 | 0.2388 | |
鼎湖山 DHS | 37.9 | 0.2137 | |
大顶山 DDS | 48.3 | 0.2473 | |
总体 Total | 66.6 | 0.2990 | |
平均 Mean level | 53.1 | 0.2626 | |
物种 Species level | 83.2 | 0.3621 |
Table 3 Genetic diversity among the seven populations of Tsoongiodendron odorum based on ISSR markers
种群 Population | 多态条带百分比 % of polymorphic bands | Shannon信息指数 Shannon information index | |
---|---|---|---|
自然种群 Natural populations | |||
弄相山 NXS | 59.4 | 0.2848 | |
源口 YK | 55.0 | 0.2618 | |
连山 LS | 61.9 | 0.2995 | |
南昆山 NKS | 62.2 | 0.2926 | |
总体 Total | 80.9 | 0.3629 | |
人工种群 Planted populations | |||
车八岭 CBL | 47.2 | 0.2388 | |
鼎湖山 DHS | 37.9 | 0.2137 | |
大顶山 DDS | 48.3 | 0.2473 | |
总体 Total | 66.6 | 0.2990 | |
平均 Mean level | 53.1 | 0.2626 | |
物种 Species level | 83.2 | 0.3621 |
Fig. 2 The genetic structure of 163 Tsoongiodendron odorum individuals. The vertical axis shows the proportion of individuals in different clusters. Population codes see Table 1.
种群 Population | 弄相山 NXS | 源口 YK | 连山 LS | 南昆山 NKS | 车八岭 CBL | 鼎湖山 DHS | 大顶山 DDS |
---|---|---|---|---|---|---|---|
弄相山 NXS | **** | ||||||
源口 YK | 0.2895* | **** | |||||
连山 LS | 0.2739* | 0.1858* | **** | ||||
南昆山 NKS | 0.3332* | 0.2699* | 0.1581* | **** | |||
车八岭 CBL | 0.2657* | 0.2231* | 0.2461* | 0.2982* | **** | ||
鼎湖山 DHS | 0.2951* | 0.2041* | 0.2338* | 0.3067* | 0.1544* | **** | |
大顶山 DDS | 0.3174* | 0.1784* | 0.2266* | 0.2788* | 0.1867* | 0.2212* | **** |
Table 4 Pairwise estimated ΦST values among Tsoongiodendron odorum populations
种群 Population | 弄相山 NXS | 源口 YK | 连山 LS | 南昆山 NKS | 车八岭 CBL | 鼎湖山 DHS | 大顶山 DDS |
---|---|---|---|---|---|---|---|
弄相山 NXS | **** | ||||||
源口 YK | 0.2895* | **** | |||||
连山 LS | 0.2739* | 0.1858* | **** | ||||
南昆山 NKS | 0.3332* | 0.2699* | 0.1581* | **** | |||
车八岭 CBL | 0.2657* | 0.2231* | 0.2461* | 0.2982* | **** | ||
鼎湖山 DHS | 0.2951* | 0.2041* | 0.2338* | 0.3067* | 0.1544* | **** | |
大顶山 DDS | 0.3174* | 0.1784* | 0.2266* | 0.2788* | 0.1867* | 0.2212* | **** |
Fig. 3 Dendrogram of UPGMA based on ΦST of different Tsoongiodendron odorum populations. Population codes see Table 1. * indicates planted populations.
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