
Biodiv Sci ›› 2026, Vol. 34 ›› Issue (4): 25218. DOI: 10.17520/biods.2025218 cstr: 32101.14.biods.2025218
• Original Papers: Animal Diversity • Next Articles
Zitong Bai1,2(
), Cheng Wang1,2,*(
)(
), Zhiyong Qi3(
)
Received:2025-06-10
Accepted:2025-08-29
Online:2026-04-20
Published:2026-05-28
Contact:
*E-mail: wch8361@163.com
Supported by:Zitong Bai, Cheng Wang, Zhiyong Qi. Biophony responses to different vegetation structure in urban central parks of Beijing[J]. Biodiv Sci, 2026, 34(4): 25218.
Fig. 1 Map of the research area and sampling point distribution. TT, Temple of Heaven Park; TRT, Taoranting Park; ZZY, Zizhuyuan Park; LHC, Lianhuachi Park; LTH, Longtanhu Park; ZS, Zhongshan Park; LY, Liuyin Park; TYG, Taiyanggong Park; DT, Ditan Park; YT, Yuetan Park.
| 生物声指标 Biophony indices | 含义 Explanations | |
|---|---|---|
| 平均功率谱密度 Power spectral density (PSD) | PSD2-4 | 用于表征频率2-4 kHz中声学群落的能量(Watts/kHz), 多集中分布着低频鸟鸣声(Joo et al., |
| PSD4-6 | 用于表征频率4-6 kHz中声学群落的能量(Watts/kHz), 主要分布着中频的鸟鸣声和部分昆虫声。往往与更丰富的鸣禽谱系或活跃的宣告或求偶行为相关 This metric represents the acoustic energy (Watts/kHz) of sound communities within the 4-6 kHz frequency range, which is mainly composed of mid-frequency bird vocalizations along with some insect sounds. It is often associated with a richer assemblage of songbird taxa or heightened levels of territorial or courtship vocal activity | |
| PSD6-10 | 用于表征频率6-10 kHz中声学群落的能量(Watts/kHz), 在夏秋季多集中分布着高频虫鸣声(Joo et al., | |
| 声学指数 Acoustic index (AIS) | 生物声多样性指数 Bioacoustic index (BIO) | 基于soundecology包的bioacoustic_index函数, 计算每个频率(Hz)曲线在最小分贝值(dB)以上的区域, 频率阈值设定在2-11 kHz之间(Boelman et al., |
| 声学复杂度指数 Acoustic complexity index (ACI) | 基于soundecology包中的acoustic_complexity函数, 频率阈值设置在2-11 kHz之间, FFT=1,024, 通过计算声强的变异性来表征声音群落在时间维度的多变性(Pieretti et al., | |
| 声学多样性指数 Acoustic diversity index (ADI) | 基于soundecology包中的acoustic_diversity函数, 通过Shannon指数来计算光谱复杂性(Pekin et al., | |
Table 1 Six soundscape indices and their corresponding biophony explanations
| 生物声指标 Biophony indices | 含义 Explanations | |
|---|---|---|
| 平均功率谱密度 Power spectral density (PSD) | PSD2-4 | 用于表征频率2-4 kHz中声学群落的能量(Watts/kHz), 多集中分布着低频鸟鸣声(Joo et al., |
| PSD4-6 | 用于表征频率4-6 kHz中声学群落的能量(Watts/kHz), 主要分布着中频的鸟鸣声和部分昆虫声。往往与更丰富的鸣禽谱系或活跃的宣告或求偶行为相关 This metric represents the acoustic energy (Watts/kHz) of sound communities within the 4-6 kHz frequency range, which is mainly composed of mid-frequency bird vocalizations along with some insect sounds. It is often associated with a richer assemblage of songbird taxa or heightened levels of territorial or courtship vocal activity | |
| PSD6-10 | 用于表征频率6-10 kHz中声学群落的能量(Watts/kHz), 在夏秋季多集中分布着高频虫鸣声(Joo et al., | |
| 声学指数 Acoustic index (AIS) | 生物声多样性指数 Bioacoustic index (BIO) | 基于soundecology包的bioacoustic_index函数, 计算每个频率(Hz)曲线在最小分贝值(dB)以上的区域, 频率阈值设定在2-11 kHz之间(Boelman et al., |
| 声学复杂度指数 Acoustic complexity index (ACI) | 基于soundecology包中的acoustic_complexity函数, 频率阈值设置在2-11 kHz之间, FFT=1,024, 通过计算声强的变异性来表征声音群落在时间维度的多变性(Pieretti et al., | |
| 声学多样性指数 Acoustic diversity index (ADI) | 基于soundecology包中的acoustic_diversity函数, 通过Shannon指数来计算光谱复杂性(Pekin et al., | |
Fig. 2 Illustration of vegetation point cloud semantic segmentation. The light green points represent tall trees, denoted as higher vegetation points, while the dark green points represent the point clouds of shrub and grass layers, classified as lower vegetation points.
| 主成分 PC | 成分1 Component 1 | 成分2 Component 2 | 成分3 Component 3 | 成分4 Component 4 | 成分5 Component 5 | 累积方差 Cumulative variance (%) |
|---|---|---|---|---|---|---|
| PC1 | H.p80 | H.p70 | H.p90 | H-mean | VCI | 30.67 |
| PC2 | H-cv | LAI | H.p20 | H.p30 | CRR | 54.38 |
| PC3 | Oligo_LA | Eu_LA | Oligo_volume | DBHm | CC | 66.43 |
| PC4 | Eu_Depth | Eu_volume | CWm | Filled_VR | Empty_VR | 75.93 |
| PC5 | UN_TCH | UN_RI | UND | RI | H.p10 | 82.70 |
Table 2 Key vegetation structural variables corresponding to the first five principal components (PC)
| 主成分 PC | 成分1 Component 1 | 成分2 Component 2 | 成分3 Component 3 | 成分4 Component 4 | 成分5 Component 5 | 累积方差 Cumulative variance (%) |
|---|---|---|---|---|---|---|
| PC1 | H.p80 | H.p70 | H.p90 | H-mean | VCI | 30.67 |
| PC2 | H-cv | LAI | H.p20 | H.p30 | CRR | 54.38 |
| PC3 | Oligo_LA | Eu_LA | Oligo_volume | DBHm | CC | 66.43 |
| PC4 | Eu_Depth | Eu_volume | CWm | Filled_VR | Empty_VR | 75.93 |
| PC5 | UN_TCH | UN_RI | UND | RI | H.p10 | 82.70 |
Fig. 4 Contribution plot of principal component analysis variables. Colors indicate the degree of correlation (cos2 values) between 25 vegetation structural variables and the first two principal components, with warmer tones signifying stronger correlations and higher contributions. The length and direction of the arrows reflect each variable’s importance and explanatory power, with those closer to the perimeter of the correlation circle contributing more significantly to the principal component structure. The ecological descriptions of the abbreviations in the figure are detailed in Appendix 2.
| 声景指标Soundscape indices | 决定系数 Coefficient of determination (R2) | 相对均方根误差 Relative root mean square error (rRMSE, %) | 相对平均绝对误差 Relative mean absolute error (rMAE, %) |
|---|---|---|---|
| PSD2-4 | 0.82 | 8.39 | 6.13 |
| PSD4-6 | 0.83 | 10.25 | 7.45 |
| PSD6-10 | 0.88 | 10.69 | 7.76 |
| ACI | 0.69 | 19.25 | 14.10 |
| ADI | 0.77 | 20.37 | 15.72 |
| BIO | 0.78 | 19.74 | 25.93 |
Table 3 Goodness of fit evaluation of XGBoost models
| 声景指标Soundscape indices | 决定系数 Coefficient of determination (R2) | 相对均方根误差 Relative root mean square error (rRMSE, %) | 相对平均绝对误差 Relative mean absolute error (rMAE, %) |
|---|---|---|---|
| PSD2-4 | 0.82 | 8.39 | 6.13 |
| PSD4-6 | 0.83 | 10.25 | 7.45 |
| PSD6-10 | 0.88 | 10.69 | 7.76 |
| ACI | 0.69 | 19.25 | 14.10 |
| ADI | 0.77 | 20.37 | 15.72 |
| BIO | 0.78 | 19.74 | 25.93 |
Fig. 5 Importance and summary plots of vegetation structural variables based on SHAP values. The ecological meanings corresponding to the abbreviations of vegetation structural variables in the figure are detailed in Appendix 2. The ecological descriptions of the abbreviations of soundscape indices are detailed in Table 1.
Fig. 6 SHAP dependence plots showing nonlinear responses of key vegetation structural variables on biophony indices. The ecological meanings corresponding to the abbreviations of vegetation structural variables in the figure are detailed in Appendix 2.
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