Biodiv Sci ›› 2025, Vol. 33 ›› Issue (1): 24403. DOI: 10.17520/biods.2024403 cstr: 32101.14.biods.2024403
• Original Papers: Animal Diversity • Previous Articles Next Articles
Jiabei He1(), Ke Ke1, Haiming Sun2, Liping Hu1, Xiaowei Zhao1, Wenhao Wang1, Qiang Zhao1,*(
)
Received:
2024-09-08
Accepted:
2025-01-17
Online:
2025-01-20
Published:
2025-01-27
Contact:
* E-mail: Supported by:
Jiabei He, Ke Ke, Haiming Sun, Liping Hu, Xiaowei Zhao, Wenhao Wang, Qiang Zhao. Diet analysis of Neptunea cumingii using metabarcoding[J]. Biodiv Sci, 2025, 33(1): 24403.
引物 Primer | 引物序列 Primer sequence | 预期长度 Fragment length | 参考文献 Reference | |
---|---|---|---|---|
18S rDNA V4 | 3NDF | 5′-GGCAAGTCTGGTGCCAG-3′ | 450 bp | Bråte et al, |
V4-euk-R2R | 5′-ACGGTATCTRATCRTCTTCG-3′ | |||
18S rDNA V9 | Euk1391f | 5′-GTACACACCGCCCGTC-3′ | 200‒300 bp | Amaral-Zettler et al, |
EukBr | 5′-TGATCCTTCTGCAGGTTCACCTAC-3′ |
Table 1 PCR primers for species identification for stomach contents of Neptunea cumingii based on different hypervariable regions of 18S rDNA
引物 Primer | 引物序列 Primer sequence | 预期长度 Fragment length | 参考文献 Reference | |
---|---|---|---|---|
18S rDNA V4 | 3NDF | 5′-GGCAAGTCTGGTGCCAG-3′ | 450 bp | Bråte et al, |
V4-euk-R2R | 5′-ACGGTATCTRATCRTCTTCG-3′ | |||
18S rDNA V9 | Euk1391f | 5′-GTACACACCGCCCGTC-3′ | 200‒300 bp | Amaral-Zettler et al, |
EukBr | 5′-TGATCCTTCTGCAGGTTCACCTAC-3′ |
原始序列 Paired-end reads | 高质量序列 High quality reads | 序列平均长度 Average length of reads | OTU数 No. of OTU | |
---|---|---|---|---|
18S rDNA V4 | 284,619 | 265,161 | 429 | 141 |
18S rDNA V9 | 256,536 | 221,998 | 124 | 490 |
Table 2 The raw reads, high quality reads and operational taxonomic units (OTUs) in stomach contents of Neptunea cumingii based on different hypervariable regions of 18S rDNA
原始序列 Paired-end reads | 高质量序列 High quality reads | 序列平均长度 Average length of reads | OTU数 No. of OTU | |
---|---|---|---|---|
18S rDNA V4 | 284,619 | 265,161 | 429 | 141 |
18S rDNA V9 | 256,536 | 221,998 | 124 | 490 |
Fig. 1 Classification information of stomach contents in Neptunea cumingii obtained from different hypervariable regions. OTU, Operational taxonomic unit.
分类 Classification | 细化分类单元 Classification in details |
---|---|
环节动物门 Annelida | 单向蚓目 Haplotaxida |
节肢动物门 Arthropoda | 猛水蚤目 Harpacticoida 尾肢目 Podocopida 软甲纲 Malacostraca 膜翅目 Hymenoptera 鳃足纲 Diplostraca 蛛形纲 Arachnida |
软体动物门 Mollusca | 牡蛎目 Ostreoida 新腹足目 Caenogastropoda 枪形目 Teuthida 头足纲 Cephalopoda |
扁形动物门 Platyhelminthes | 后睾目 Opisthorchiida 斜睾目 Plagiorchiida 独孤科 Azygiida |
脊椎动物亚门 Vertebrata | 哺乳纲 Mammalia 辅鳍鱼纲 Actinopterygii |
刺胞动物门 Cnidaria | 多壳目 Multivalvulida |
眼虫门 Euglenozoa | 异线虫目 Heteronematina 动质体纲 Kinetoplastea 副牙形目 Parabodonida |
线虫动物门 Nematozoa | 蛔目 Ascaridida 单宫目 Monhysterida 杆形目 Rhabditida |
棘皮动物门 Echinodermata | 海星纲 Asteroidea |
苔藓虫门 Bryozoa | 唇口目 Cheilostomatida 栉口目 Ctenostomatida |
Aphelidea | 未鉴定 Norank |
子囊菌门 Ascomycota | 枝孢菌科 Cladosporiaceae 曲霉科 Aspergillaceae 梅奇酵母科 Metschnikowiaceae 毕赤酵母科 Pichiaceae 汉斯德巴酵母科 Debaryomycetaceae 双足囊菌科 Dipodascaceae 亚隔孢壳科 Didymellaceae 酵母科 Saccharomycetaceae 发菌科 Trichocomaceae Plectosphaerellaceae |
担子菌门 Basidiomycota | 线黑粉菌科 Filobasidiaceae 马拉色菌科 Malasseziaceae 微球黑粉菌纲 Microbotryomycetes 短臂担科 Brachybasidiaceae 伞菌目 Agaricales 毛孢子菌科 Trichosporonaceae 黑粉菌科 Ustilaginaceae 多孔菌目 Polyporales |
壶菌门 Chytridiomycota | 未鉴定 Norank |
隐霉菌门 Cryptomycota | 未鉴定 Norank |
芦苇藻门 Phragmoplastophyta | 有胚植物纲 Embryophyta |
SAR超类群 SAR | 网黏菌纲 Labyrinthulomycetes 脆杆菌目 Fragilariales 水云目 Ectocarpales 间藻纲 Mediophyceae 卡盾藻纲 Chattonellales Archigregarinorida Thecofilosea 海洋原生藻 MAST-12A 叶咽纲 Phyllopharyngea Eugregarinorida 横列甲藻纲 Dinophyceae Gregarinasina 植黏菌纲 Phytomyxea 多甲藻目 Peridiniales 直链藻属 Melosirids Suessiaceae |
Table 3 Results of food types analysis based on OTUs
分类 Classification | 细化分类单元 Classification in details |
---|---|
环节动物门 Annelida | 单向蚓目 Haplotaxida |
节肢动物门 Arthropoda | 猛水蚤目 Harpacticoida 尾肢目 Podocopida 软甲纲 Malacostraca 膜翅目 Hymenoptera 鳃足纲 Diplostraca 蛛形纲 Arachnida |
软体动物门 Mollusca | 牡蛎目 Ostreoida 新腹足目 Caenogastropoda 枪形目 Teuthida 头足纲 Cephalopoda |
扁形动物门 Platyhelminthes | 后睾目 Opisthorchiida 斜睾目 Plagiorchiida 独孤科 Azygiida |
脊椎动物亚门 Vertebrata | 哺乳纲 Mammalia 辅鳍鱼纲 Actinopterygii |
刺胞动物门 Cnidaria | 多壳目 Multivalvulida |
眼虫门 Euglenozoa | 异线虫目 Heteronematina 动质体纲 Kinetoplastea 副牙形目 Parabodonida |
线虫动物门 Nematozoa | 蛔目 Ascaridida 单宫目 Monhysterida 杆形目 Rhabditida |
棘皮动物门 Echinodermata | 海星纲 Asteroidea |
苔藓虫门 Bryozoa | 唇口目 Cheilostomatida 栉口目 Ctenostomatida |
Aphelidea | 未鉴定 Norank |
子囊菌门 Ascomycota | 枝孢菌科 Cladosporiaceae 曲霉科 Aspergillaceae 梅奇酵母科 Metschnikowiaceae 毕赤酵母科 Pichiaceae 汉斯德巴酵母科 Debaryomycetaceae 双足囊菌科 Dipodascaceae 亚隔孢壳科 Didymellaceae 酵母科 Saccharomycetaceae 发菌科 Trichocomaceae Plectosphaerellaceae |
担子菌门 Basidiomycota | 线黑粉菌科 Filobasidiaceae 马拉色菌科 Malasseziaceae 微球黑粉菌纲 Microbotryomycetes 短臂担科 Brachybasidiaceae 伞菌目 Agaricales 毛孢子菌科 Trichosporonaceae 黑粉菌科 Ustilaginaceae 多孔菌目 Polyporales |
壶菌门 Chytridiomycota | 未鉴定 Norank |
隐霉菌门 Cryptomycota | 未鉴定 Norank |
芦苇藻门 Phragmoplastophyta | 有胚植物纲 Embryophyta |
SAR超类群 SAR | 网黏菌纲 Labyrinthulomycetes 脆杆菌目 Fragilariales 水云目 Ectocarpales 间藻纲 Mediophyceae 卡盾藻纲 Chattonellales Archigregarinorida Thecofilosea 海洋原生藻 MAST-12A 叶咽纲 Phyllopharyngea Eugregarinorida 横列甲藻纲 Dinophyceae Gregarinasina 植黏菌纲 Phytomyxea 多甲藻目 Peridiniales 直链藻属 Melosirids Suessiaceae |
Fig. 2 Relative abundance of stomach contents for Neptunea cumingii in the class level (S1‒4 represents different samples). (a) 18S rDNA V4 hypervariable region; (b) 18S rDNA V9 hypervariable region. The red font in the legend indicates the taxonomic categories identified by both the 18S rDNA V4 and V9 regions.
Fig. 3 Venn diagram showing the unique and shared OTUs in samples (S1-4 represents different samples). (a) 18S rDNA V4 hypervariable region; (b) 18S rDNA V9 hypervariable region.
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