Biodiv Sci ›› 2015, Vol. 23 ›› Issue (6): 784-792. DOI: 10.17520/biods.2015075
Special Issue: 青藏高原生物多样性与生态安全
• Original Papers: Animal Diversity • Previous Articles Next Articles
Lili Xie, Lei Xu*, Qiuqi Lin, Boping Han
Received:
2015-03-25
Accepted:
2015-09-01
Online:
2015-11-20
Published:
2015-12-02
Contact:
Xu Lei
Lili Xie, Lei Xu, Qiuqi Lin, Boping Han. Phylogenetics of the Daphnia longispina complex in Tibetan lakes[J]. Biodiv Sci, 2015, 23(6): 784-792.
采样点 Location | 纬度 经度 Latitude Longitude | 代号 Code | GenBank登录号 GenBank accession | 序列来源 Sequence source |
---|---|---|---|---|
盔形溞 Daphnia galeata | ||||
错鄂 Cuoe, China | 31.63º N 88.67° E | CE1 | 本研究 This study | |
错鄂 Cuoe, China | 31.63º N 88.67° E | CE2 | 本研究 This study | |
打加芒错 Dajiamangcuo, China | 29.65º N 85.75° E | DJMC1 | 本研究 This study | |
打加芒错 Dajiamangcuo, China | 29.65º N 85.75° E | DJMC2 | 本研究 This study | |
骆马湖 Luoma Lake, China | 34.07º N 118.11° E | HC3 | KM555356 | GenBank |
西湖 West Lake, China | 30.15º N 120.08° E | HC2 | KM555355 | GenBank |
宝应湖 Baoying Lake, China | 33.10º N 119.14° E | HC1 | KM555354 | GenBank |
颈齿溞 Daphnia dentifera | ||||
沉错 Chencuo, China | 28.88º N 90.47° E | CC | 本研究 This study | |
拉萨河 Lasahe, China | 29.68º N 91.28° E | LS1 | 本研究 This study | |
拉萨河 Lasahe, China | 29.68º N 91.28° E | LS2 | 本研究 This study | |
那曲湖 Naqu Lake, China | 31.48º N 92.05° E | NQHA | KM555369 | GenBank |
Canada | CND | FJ427488 | GenBank | |
格桑桥 Gesangqiao, China | 29.65º N 91.12° E | GSQA | KM555366 | GenBank |
长刺溞 Daphnia longispina | ||||
班公错 Bangongcuo, China 班公错 Bangongcuo, China | 33.71º N 78.81° E 33.71º N 78.81° E | BGC1 BGC2 | 本研究 This study 本研究 This study | |
Sweden Germany Switzerland | DEM H29 SZL | EF375861 EF375860 EF375862 | GenBank GenBank GenBank |
Table 1 Geographic and genetic characteristics of 18 Daphnia longispina complex populations
采样点 Location | 纬度 经度 Latitude Longitude | 代号 Code | GenBank登录号 GenBank accession | 序列来源 Sequence source |
---|---|---|---|---|
盔形溞 Daphnia galeata | ||||
错鄂 Cuoe, China | 31.63º N 88.67° E | CE1 | 本研究 This study | |
错鄂 Cuoe, China | 31.63º N 88.67° E | CE2 | 本研究 This study | |
打加芒错 Dajiamangcuo, China | 29.65º N 85.75° E | DJMC1 | 本研究 This study | |
打加芒错 Dajiamangcuo, China | 29.65º N 85.75° E | DJMC2 | 本研究 This study | |
骆马湖 Luoma Lake, China | 34.07º N 118.11° E | HC3 | KM555356 | GenBank |
西湖 West Lake, China | 30.15º N 120.08° E | HC2 | KM555355 | GenBank |
宝应湖 Baoying Lake, China | 33.10º N 119.14° E | HC1 | KM555354 | GenBank |
颈齿溞 Daphnia dentifera | ||||
沉错 Chencuo, China | 28.88º N 90.47° E | CC | 本研究 This study | |
拉萨河 Lasahe, China | 29.68º N 91.28° E | LS1 | 本研究 This study | |
拉萨河 Lasahe, China | 29.68º N 91.28° E | LS2 | 本研究 This study | |
那曲湖 Naqu Lake, China | 31.48º N 92.05° E | NQHA | KM555369 | GenBank |
Canada | CND | FJ427488 | GenBank | |
格桑桥 Gesangqiao, China | 29.65º N 91.12° E | GSQA | KM555366 | GenBank |
长刺溞 Daphnia longispina | ||||
班公错 Bangongcuo, China 班公错 Bangongcuo, China | 33.71º N 78.81° E 33.71º N 78.81° E | BGC1 BGC2 | 本研究 This study 本研究 This study | |
Sweden Germany Switzerland | DEM H29 SZL | EF375861 EF375860 EF375862 | GenBank GenBank GenBank |
HC3 | HC1 | HC2 | CE | DJMC | |
---|---|---|---|---|---|
HC3 | n.c. | ||||
HC1 | 0.33 ± 0.23 | n.c. | |||
HC2 | 2.15 ± 0.57 | 1.81 ± 0.53 | n.c. | ||
CE | 2.74 ± 0.66 | 2.40 ± 0.63 | 0.90 ± 0.36 | 0.16 ± 0.15 | |
DJMC | 2.49 ± 0.62 | 2.15 ± 0.59 | 0.65 ± 0.33 | 0.90 ± 0.37 | 0.16 ±0.15 |
Table 2 The genetic differentiation (%) between (below the diagonal) and within (on the diagonal) Daphnia galeata populations
HC3 | HC1 | HC2 | CE | DJMC | |
---|---|---|---|---|---|
HC3 | n.c. | ||||
HC1 | 0.33 ± 0.23 | n.c. | |||
HC2 | 2.15 ± 0.57 | 1.81 ± 0.53 | n.c. | ||
CE | 2.74 ± 0.66 | 2.40 ± 0.63 | 0.90 ± 0.36 | 0.16 ± 0.15 | |
DJMC | 2.49 ± 0.62 | 2.15 ± 0.59 | 0.65 ± 0.33 | 0.90 ± 0.37 | 0.16 ±0.15 |
DEM | H29 | SZL | BGC | |
---|---|---|---|---|
DEM | n.c. | |||
H29 | 1.81 ± 0.53 | n.c. | ||
SZL | 1.81 ± 0.54 | 1.31 ± 0.43 | n.c. | |
BGC | 5.50 ± 0.92 | 4.88 ± 0.84 | 4.62 ± 0.80 | 1.62 ± 0.51 |
Table 3 The genetic differentiation (%) between (below the diagonal) and within (on the diagonal) Daphnia longispina populations
DEM | H29 | SZL | BGC | |
---|---|---|---|---|
DEM | n.c. | |||
H29 | 1.81 ± 0.53 | n.c. | ||
SZL | 1.81 ± 0.54 | 1.31 ± 0.43 | n.c. | |
BGC | 5.50 ± 0.92 | 4.88 ± 0.84 | 4.62 ± 0.80 | 1.62 ± 0.51 |
CND | NQHA | GSQA | LS | CC | |
---|---|---|---|---|---|
CND | n.c. | ||||
NQHA | 1.98 ± 0.55 | n.c. | |||
GSQA | 2.15 ± 0.60 | 0.49 ± 0.30 | n.c. | ||
LS | 2.32 ± 0.60 | 0.65 ± 0.30 | 0.33 ± 0.16 | 0.65 ± 0.32 | |
CC | 2.15 ± 0.60 | 0.49 ± 0.30 | 0.00 | 0.33 ± 0.16 | n.c. |
Table 4 The genetic differentiation (%) between (below the diagonal) and within (on the diagonal) Daphnia dentifera populations
CND | NQHA | GSQA | LS | CC | |
---|---|---|---|---|---|
CND | n.c. | ||||
NQHA | 1.98 ± 0.55 | n.c. | |||
GSQA | 2.15 ± 0.60 | 0.49 ± 0.30 | n.c. | ||
LS | 2.32 ± 0.60 | 0.65 ± 0.30 | 0.33 ± 0.16 | 0.65 ± 0.32 | |
CC | 2.15 ± 0.60 | 0.49 ± 0.30 | 0.00 | 0.33 ± 0.16 | n.c. |
DG | DL | DD | |
---|---|---|---|
DG | 1.46 ± 0.31 | 71(67.62%) | 79(80.61%) |
DL | 16.70 ± 1.72 | 3.66 ± 0.59 | 32(49.23%) |
DD | 16.98 ± 1.87 | 9.40 ± 1.12 | 1.01 ± 0.24 |
Table 5 The genetic differentiation (%) between and within species in Daphnia longispina complex (on the diagonal and below the diagonal) and the fixed differences among these haplotypes (above the diagonal)
DG | DL | DD | |
---|---|---|---|
DG | 1.46 ± 0.31 | 71(67.62%) | 79(80.61%) |
DL | 16.70 ± 1.72 | 3.66 ± 0.59 | 32(49.23%) |
DD | 16.98 ± 1.87 | 9.40 ± 1.12 | 1.01 ± 0.24 |
Fig. 1 Haplotype network for Daphnia longispina complex based on mitochondria COI gene sequences. Numbers between subnetworks represent the average number of mutations between subclades. The population codes are the same as those in Table 1.
Fig. 2 Bayes and Maximum Likelihood phylogenetic tree of Daphnia longispina complex based on mitochondria COI gene sequences. Posterior probabilities (Bayes tree) and bootstrap values (Maximum Likelihood tree) are shown above the nodes. The population codes are the same as those in Table 1.
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