Biodiv Sci ›› 2016, Vol. 24 ›› Issue (3): 341-350. DOI: 10.17520/biods.2015260
Special Issue: 生物入侵
• Original Papers: Animal Diversity • Previous Articles Next Articles
Qianqian Yang, Suwen Liu, Weidong Ru, Guangfu Liu, Xiaoping Yu*()
Received:
2015-09-23
Accepted:
2016-03-11
Online:
2016-03-20
Published:
2016-04-05
Contact:
Yu Xiaoping
Qianqian Yang, Suwen Liu, Weidong Ru, Guangfu Liu, Xiaoping Yu. Molecular identification of invasive golden apple snails in Zhejiang Province based on DNA barcoding[J]. Biodiv Sci, 2016, 24(3): 341-350.
编号 Code | 采集地点 Locality | 采集环境 Habitat | 采集时间 Time | 数量 No. | GenBank注册号 GenBank accession no. |
---|---|---|---|---|---|
ZSPT | 舟山普陀区 Putuo, Zhoushan | 河道 River | 2014年8月 August, 2014 | 31 | KP310330, KP310417, KP310432-KP310435, KP310349- KP310365, KR020946, KR020947, KR020958-KR020961, KR020977, KR020978 |
SXXC | 绍兴新昌县 Xinchang, Shaoxing | 稻田 Paddy field | 2014年10月 October, 2014 | 10 | KR020982, KR020997, KR021015-KR021020, KP310438, KR106989 |
SXSY | 绍兴上虞区 Shangyu, Shaoxing | 稻田 Paddy field | 2015年7月 July, 2015 | 7 | KT693024-KT693030 |
WZOH | 温州瓯海区 Ouhai, Wenzhou | 稻田 Paddy field | 2014年10月 October, 2014 | 13 | KR020970-KR020973, KR020979, KR020981, KR020993, KR021007-KR021010, KR021013, KT692988 |
NBYY | 宁波余姚市 Yuyao, Ningbo | 稻田 Paddy field | 2014年8月 August, 2014 | 5 | KT852725, KT852726, KT852740-KT852742 |
HZXH | 杭州西湖区 Xihu, Hangzhou | 荷塘 Lotus pond | 2015年6月 June, 2015 | 15 | KT693009-KT693023 |
HZACA | 杭州江干区 Jianggan, Hangzhou | 荷塘 Lotus pond | 2015年6月 June, 2015 | 20 | KT692989-KT693008 |
Table 1 Collection and COI sequence information of apple snail samples from Zhejiang
编号 Code | 采集地点 Locality | 采集环境 Habitat | 采集时间 Time | 数量 No. | GenBank注册号 GenBank accession no. |
---|---|---|---|---|---|
ZSPT | 舟山普陀区 Putuo, Zhoushan | 河道 River | 2014年8月 August, 2014 | 31 | KP310330, KP310417, KP310432-KP310435, KP310349- KP310365, KR020946, KR020947, KR020958-KR020961, KR020977, KR020978 |
SXXC | 绍兴新昌县 Xinchang, Shaoxing | 稻田 Paddy field | 2014年10月 October, 2014 | 10 | KR020982, KR020997, KR021015-KR021020, KP310438, KR106989 |
SXSY | 绍兴上虞区 Shangyu, Shaoxing | 稻田 Paddy field | 2015年7月 July, 2015 | 7 | KT693024-KT693030 |
WZOH | 温州瓯海区 Ouhai, Wenzhou | 稻田 Paddy field | 2014年10月 October, 2014 | 13 | KR020970-KR020973, KR020979, KR020981, KR020993, KR021007-KR021010, KR021013, KT692988 |
NBYY | 宁波余姚市 Yuyao, Ningbo | 稻田 Paddy field | 2014年8月 August, 2014 | 5 | KT852725, KT852726, KT852740-KT852742 |
HZXH | 杭州西湖区 Xihu, Hangzhou | 荷塘 Lotus pond | 2015年6月 June, 2015 | 15 | KT693009-KT693023 |
HZACA | 杭州江干区 Jianggan, Hangzhou | 荷塘 Lotus pond | 2015年6月 June, 2015 | 20 | KT692989-KT693008 |
编号 Code | Hap1 | Hap2 | Hap3 | Hap4 | Hap5 | Hap6 |
---|---|---|---|---|---|---|
ZSPT | 7 | 24 | ||||
SXXC | 1 | 9 | ||||
SXSY | 1 | 6 | ||||
WZOH | 9 | 2 | 2 | |||
NBYY | 5 | |||||
HZXH | 6 | 9 | ||||
HZACA | 14 | 5 | 1 | |||
合计 Total | 43 | 2 | 35 | 15 | 5 | 1 |
Table 2 Distribution of different haplotypes of two apple snail species
编号 Code | Hap1 | Hap2 | Hap3 | Hap4 | Hap5 | Hap6 |
---|---|---|---|---|---|---|
ZSPT | 7 | 24 | ||||
SXXC | 1 | 9 | ||||
SXSY | 1 | 6 | ||||
WZOH | 9 | 2 | 2 | |||
NBYY | 5 | |||||
HZXH | 6 | 9 | ||||
HZACA | 14 | 5 | 1 | |||
合计 Total | 43 | 2 | 35 | 15 | 5 | 1 |
Hap1 | Hap2 | Hap3 | Hap4 | Hap5 | Hap6 | |
---|---|---|---|---|---|---|
Hap1 | 27 | 28 | 28 | 60 | 61 | |
Hap2 | 0.051 | 12 | 1 | 59 | 60 | |
Hap3 | 0.053 | 0.020 | 13 | 57 | 58 | |
Hap4 | 0.053 | 0.002 | 0.022 | 58 | 59 | |
Hap5 | 0.121 | 0.120 | 0.116 | 0.118 | 13 | |
Hap6 | 0.123 | 0.122 | 0.118 | 0.120 | 0.005 |
Table 3 K2P genetic distances (below diagonal) and number of nucleotide divergence (above diagonal) among haplotypes of P. canaliculata and P. maculata
Hap1 | Hap2 | Hap3 | Hap4 | Hap5 | Hap6 | |
---|---|---|---|---|---|---|
Hap1 | 27 | 28 | 28 | 60 | 61 | |
Hap2 | 0.051 | 12 | 1 | 59 | 60 | |
Hap3 | 0.053 | 0.020 | 13 | 57 | 58 | |
Hap4 | 0.053 | 0.002 | 0.022 | 58 | 59 | |
Hap5 | 0.121 | 0.120 | 0.116 | 0.118 | 13 | |
Hap6 | 0.123 | 0.122 | 0.118 | 0.120 | 0.005 |
查询序列 Query sequences | BOLD比对种 BOLD species | GenBank序列号 GenBank accession no. | 相似度 Similarity (%) |
---|---|---|---|
Hap1 | P. canaliculata | EF514984 | 100 |
EF513983 | 100 | ||
EF514980 | 100 | ||
Hap2 | P. canaliculata | FJ946822 | 100 |
AB433759 | 100 | ||
AB433765 | 100 | ||
Hap3 | P. canaliculata | AB433771 | 100 |
FJ946824 | 100 | ||
FJ946825 | 99.84 | ||
Hap4 | P. canaliculata | EU528578 | 100 |
AB433762 | 100 | ||
AB433770 | 99.85 | ||
Hap5 | P. maculata* | GU236486 | 100 |
GU236487 | 100 | ||
GU236488 | 100 | ||
Hap6 | P. maculata* | EF514986 | 99.43 |
EU528502 | 99.43 | ||
AB433781 | 99.43 |
Table 4 Similarity of haplotypes blasted in BOLD and the identification results
查询序列 Query sequences | BOLD比对种 BOLD species | GenBank序列号 GenBank accession no. | 相似度 Similarity (%) |
---|---|---|---|
Hap1 | P. canaliculata | EF514984 | 100 |
EF513983 | 100 | ||
EF514980 | 100 | ||
Hap2 | P. canaliculata | FJ946822 | 100 |
AB433759 | 100 | ||
AB433765 | 100 | ||
Hap3 | P. canaliculata | AB433771 | 100 |
FJ946824 | 100 | ||
FJ946825 | 99.84 | ||
Hap4 | P. canaliculata | EU528578 | 100 |
AB433762 | 100 | ||
AB433770 | 99.85 | ||
Hap5 | P. maculata* | GU236486 | 100 |
GU236487 | 100 | ||
GU236488 | 100 | ||
Hap6 | P. maculata* | EF514986 | 99.43 |
EU528502 | 99.43 | ||
AB433781 | 99.43 |
Fig. 1 DNA barcoding gap and partition strategy through ABGD algorithm. Distributions of K2P distances between each pair of COI sequences, histogram of distance (A), ranked distance (B), and number of partitions obtained for each prior intraspecific divergence (C).
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