Biodiv Sci ›› 2022, Vol. 30 ›› Issue (6): 21545. DOI: 10.17520/biods.2021545
• Original Papers: Genetic Diversity • Previous Articles Next Articles
Yongguang Li1,2, Hui Ren1, Yingjie Zhang1, Ruining Li2, Hao Ai2, Xianzhong Huang2,3,*()
Received:
2021-12-30
Accepted:
2022-03-10
Online:
2022-06-20
Published:
2022-03-11
Contact:
Xianzhong Huang
Yongguang Li, Hui Ren, Yingjie Zhang, Ruining Li, Hao Ai, Xianzhong Huang. Analysis of the molecular evolution of the PEBP gene family in cruciferous plants[J]. Biodiv Sci, 2022, 30(6): 21545.
Fig. 1 Motif distributions and exon-intron structures of the PEBP family members in Arabidopsis thaliana, A. lyrata, A. pumila, Camelina sativa, Brassica oleracea, B. rapa, and B. napus. A, PEBP phylogenetic tree of seven species; B, Exon-intron distribution of PEBP genes; C, Distribution characteristics of the conserved motifs of PEBP proteins; CDS, Coding sequence; UTR, Untranslated region; aa, Amino acid.
Fig. 2 Statistics of selection pressures on the PEBP collinearity genes within species. At, Arabidopsis thaliana; Al, A. lyrata; Ap, A. pumila; Cs, Camelina sativa; Bo, Brassica oleracea; Br, B. rapa; Bn, B. napus.
Fig. 3 Syntenic relationships of PEBP genes in Arabidopsis thaliana, Brassica oleracea, B. rapa, and B. napus. The cylinder represents 5, 9, 10 and 21 chromosomes of A. thaliana, B. oleracea, B. rapa, and B. napus, respectively. The black line represents a common linear relationship of the PEBP gene, and the gray line represents a genomic linear relationship. The triangle represents the location of the TSF gene.
物种 Species | PEBP基因数量 No. of PEBP gene | 不同复制类型PEBP基因数量(百分比) No. of PEBP genes from different origins (percentage) | ||||
---|---|---|---|---|---|---|
单例型 Singleton | 分散型 Dispersed | 近端型 Proximal | 串联重复 Tandem | 全基因组复制或片段复制 WGD/S | ||
拟南芥 Arabidopsis thaliana | 6 | 0 | 1 (16.6) | 0 | 0 | 5 (83.3) |
琴叶拟南芥 Arabidopsis lyrata | 7 | 0 | 7 (100) | 0 | 0 | 0 |
小鼠耳芥 Arabidopsis pumila | 11 | 0 | 1 (9.1) | 0 | 0 | 10 (90.9) |
亚麻芥 Camelina sativa | 17 | 0 | 1 (5.9) | 0 | 0 | 16 (94.1) |
甘蓝 Brassica oleracea | 11 | 0 | 1 (9.1) | 0 | 0 | 10 (90.9) |
白菜 Brassica rapa | 14 | 0 | 3 (21.4) | 1 (7.1) | 0 | 10 (71.4) |
油菜 Brassica napus | 25 | 0 | 6 (24) | 0 | 0 | 19 (76) |
Table 1 Types of replication of PEBP gene family in Cruciferae plants
物种 Species | PEBP基因数量 No. of PEBP gene | 不同复制类型PEBP基因数量(百分比) No. of PEBP genes from different origins (percentage) | ||||
---|---|---|---|---|---|---|
单例型 Singleton | 分散型 Dispersed | 近端型 Proximal | 串联重复 Tandem | 全基因组复制或片段复制 WGD/S | ||
拟南芥 Arabidopsis thaliana | 6 | 0 | 1 (16.6) | 0 | 0 | 5 (83.3) |
琴叶拟南芥 Arabidopsis lyrata | 7 | 0 | 7 (100) | 0 | 0 | 0 |
小鼠耳芥 Arabidopsis pumila | 11 | 0 | 1 (9.1) | 0 | 0 | 10 (90.9) |
亚麻芥 Camelina sativa | 17 | 0 | 1 (5.9) | 0 | 0 | 16 (94.1) |
甘蓝 Brassica oleracea | 11 | 0 | 1 (9.1) | 0 | 0 | 10 (90.9) |
白菜 Brassica rapa | 14 | 0 | 3 (21.4) | 1 (7.1) | 0 | 10 (71.4) |
油菜 Brassica napus | 25 | 0 | 6 (24) | 0 | 0 | 19 (76) |
Fig. 4 The germination rate of 35S:GhMFT1 transgenic Arabidopsis thaliana seeds treated with GA, ABA, NaCl and PEG6000. WT, Wild type; #3, #9: 35S:ApMFT transgenic lines, * Significant differences at P < 0.05; ** Significant differences at P < 0.01.
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