Biodiversity Science ›› 2016, Vol. 24 ›› Issue (12): 1345-1352.doi: 10.17520/biods.2016230

• Data Paper • Previous Article     Next Article

Principles behind designing herbarium specimen labels and the R package ‘herblabel’

Jinlong Zhang*, Huiling Zhu, Jingang Liu, Gunter A. Fischer   

  1. Flora Conservation Department, Kadoorie Farm and Botanic Garden, Hong Kong
  • Received:2016-08-23 Revised:2016-12-12 Online:2017-01-10
  • Jinlong Zhang

Voucher specimens are essential for plant taxonomy, ecology, and plant molecular biology. Collection and identification information should be clearly, accurately and formally printed on herbarium labels, without confusion or spelling mistakes. During the preparation of the labels, data entry should be straight-forward and easy to manage. Ideally, the herbarium label printing software should conduct a thorough evaluation to avoid potential errors, and should issue warnings accordingly. By taking these principles into account, we developed the herblabel R package for generating herbarium labels based on Darwin Core and CVH5.0 data exchange standards. During the implementation of herblabel, the spelling and status of scientific names and the family-genera relationship are compared with the embedded databases to determine potential mistakes or incongruence against APG or other new classification systems. As the template is based on Darwin Core exchange standards, the database could not only be used to generate summaries and reports but also could be shared via GBIF or virtual herbaria. This package will increase efficiency and reduce workload for herbarium specimen preparation, management, and data entry, and should play an important role in cataloging plant diversity.

Key words: number of samples, sampling methods, genetic variation, population genetic structure, allele frequen

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[1] YE Zi-Piao, YU Qiang. MECHANISM MODEL OF STOMATAL CONDUCTANCE[J]. Chin J Plan Ecolo, 2009, 33(4): 772 -782 .
[2] . [J]. Chin Bull Bot, 1994, 11(专辑): 10 .
[3] Huazhi Sun, Dunyan Tan, Rongming Qu. Characteristics of heteromorphic achenes of Garhadiolus papposus, an ephemeral Asteraceae species, with reference to their adaptations to desert environment[J]. Biodiv Sci, 2008, 16(4): 353 -361 .
[4] Yang Guang-xiao. Effects of EMS on Anther Culture of Rice in Vitro[J]. Chin Bull Bot, 1990, 7(02): 41 -45 .
[5] Wen-Kui Dai, Edwin Luguba Kadiori, Qing-Feng Wang, Chun-Feng Yang. Pollen limitation, plasticity in floral traits, and mixed mating system in an alpine plant Pedicularis siphonantha (Orobanchaceae) from different altitudes[J]. J Syst Evol, 2017, 55(3): 192 -199 .
[6] Hai-Yan Li and Yun-Fei Yang. Phenotypic Plasticity of Life History Characteristics: Quantitative Analysis of Delayed Reproduction of Green Foxtail (Setaria viridis) in the Songnen Plain of China[J]. J Integr Plant Biol, 2008, 50(6): 641 -647 .
[7] Chao Shi and Lang-Lai Xu. Characters of cysteine endopeptidases in wheat endosperms during seed germination and subsequent seedling growth[J]. J Integr Plant Biol, 2009, 51(1): 52 -57 .
[8] Yi Han, Wei Xuan, Tian Yu, Wen-Bing Fang, Tian-Ling Lou, Yin Gao, Xiao-Yue Chen, Xiao Xiao and Wen-Biao Shen. Exogenous Hematin Alleviates Mercury-induced Oxidative Damage in the Roots of Medicago sativa[J]. J Integr Plant Biol, 2007, 49(12): 1703 -1713 .
[9] Yan Gao, Hong-Wei Yu, Wei-Ming He. Soil space and nutrients differentially promote the growth and competitive advantages of two invasive plants[J]. J Plant Ecol, 2014, 7(4): 396 -402 .
[10] Fang Liu,Xiujiang Su,Diqiang Li,Benzhong Wang,Ziliang Zhang. Using camera trap to investigate animal diversity in Hunan Gaowangjie National Nature Reserve[J]. Biodiv Sci, 2014, 22(6): 779 -784 .