网络分析法在动物声音通讯及生物声学研究中的应用与前景
Application and prospect of network analysis in the studies of animal vocal communication and bioacoustics
通讯作者: *E-mail:cuijg@cib.ac.cn
编委: 肖治术
责任编辑: 李会丽
收稿日期: 2022-06-10 接受日期: 2022-07-14
基金资助: |
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Corresponding authors: *E-mail:cuijg@cib.ac.cn
Received: 2022-06-10 Accepted: 2022-07-14
动物社会网络分析法(animal social network analysis, ASNA)是一套用于研究动物社会性、量化个体间各种社会关系、揭示个体行为与社会结构动态之间联系的工具, 被广泛应用于多种动物类群的行为学研究。该分析方法所提供的一系列指标也非常适用于探究动物的声音交流及鸣声结构。在此, 本文首先简要介绍了网络分析法的基本概念及一些常用的指标; 然后基于野外和室内研究实例, 阐述了如何利用ASNA建立声音通讯网络、量化声音交流, 以及将ASNA与被动声学监测技术相结合的应用前景; 随后探讨了ASNA在分析鸣声相似性及鸣声地理变异中的优势; 最后概述了ASNA在解析鸣声结构和句法规则中的应用。ASNA为研究动物通讯网络以及声音信号的适应性进化提供了新的视角和新的思路。
关键词:
Background & Aim: Animal social network analysis (ASNA) is a toolbox used to examine animal sociality, quantify various social relationships between individuals, and uncover links between individual behavior and dynamics of social structures, which is widely used in studies of animal behavior across a variety of taxa. In addition, a series of measurements in ASNA are very suitable for investigating vocal interactions and song structure. Here we reviewed the applications of ASNA in studies of animal vocal communication and bioacoustics.
Progress: Firstly, we introduced a description of basic concepts and some measurements. Secondly, we described the use of ASNA to construct vocal networks and quantify vocal interactions based on field and laboratory studies, and the application prospect of ASNA combined with passive acoustic monitoring technology. Thirdly, we discussed the advantages of ASNA in analyzing song similarity and geographic variation. Finally, we summarized the application of ASNA in the analysis of song structure and syntactical rules.
Conclusion: ASNA provides a comprehensive perspective and new ideas for studying animal communication networks and investigating the adaptive evolution of acoustic signals.
Keywords:
本文引用格式
邓可, 崔建国 (2023)
Ke Deng, Jianguo Cui (2023)
20世纪30年代, Moreno (1935)在探索群体关系如何影响个体行为时, 首次使用了“社群图”, 即用“点”代表个体, 用“线”表示个体之间的社会关系。由此, 社会网络分析法(social network analysis, SNA)的雏形诞生了。20世纪50年代, 人类学家Barnes首次提出了社会网络概念, 并将这一概念用于社会学研究(Barnes, 1954)。随着图论、矩阵算法和随机理论模型的出现和发展(Forsyth & Katz, 1946; Luce & Perry, 1949; Erdös & Rényi, 1959), SNA被广泛应用于信息科学、人类学、经济学、心理学和流行病学等不同研究领域(Otte & Rousseau, 2002; Smith & Christakis, 2008; Borgatti et al, 2009)。
在行为生态学领域, Sade (1965)率先利用手绘网络图的方法, 描述了猕猴(Macaca mulatta)理毛行为的社会关系。近10余年来, 随着社会网络理论的完善和计算机技术的发展(Girvan & Newman, 2002; Newman, 2006; Whitehead, 2008b; Sih et al, 2009; De Domenico et al, 2014), SNA逐渐被应用于兽类、鸟类、鱼类以及无脊椎动物等不同动物类群的行为学研究。动物社会网络分析法(animal social network analysis, ASNA)的出现和运用, 极大程度地推动了行为生态学的发展(Krause et al, 2007; Croft et al, 2008; 张鹏, 2013; Kurvers et al, 2014; 邓可等, 2019)。个体之间某种行为的发生频次和持续时间是量化互动强度的常用指标, 但这只能反映直接的社会关系。相较而言, ASNA的优势在于能够识别和量化社会关系中的独特属性, 从不同水平(从个体到群落)揭示目标对象之间的各类社会关系(如社会冲突、合作联盟), 并能通过可视化的网络图直观展示出来(Whitehead, 2008a; Krause et al, 2009)。基于网络分析法的理论框架和分析手段, 学者们得以更好地辨识和量化个体间直接或间接的社会关系(Brent, 2015; Maguire et al, 2021), 分析社会交往格局的形成机制及动态变化(Blonder & Dornhaus, 2011; Kurvers et al, 2014; Pinter-Wollman et al, 2014), 揭示事件或信息在群体中的传播途径(VanderWaal et al, 2014a; Fountain-Jones et al, 2017)。ASNA不仅增进了学者们对社会复杂性及其生态功能的理解, 也为探讨动物社会性的进化及维持提供了新的视角, 如今已成为动物行为学研究中极为实用的一套工具(Farine & Whitehead, 2015; Kulahci & Quinn, 2019; Meise et al, 2019)。近年来, 与ASNA有关的数据分析方法和研究方向仍在不断地拓展(Croft et al, 2016; Farine, 2017; Silk et al, 2018; Robitaille et al, 2019; Bonnell & Vilette, 2020; Finn, 2021; Farine & Carter, 2022)。
目前, 动物社交网络的建立主要基于直接观测数据(如个体间的理毛、打斗) (Madden et al, 2009; Brent et al, 2011; Xia et al, 2019)或基于标志重捕数据(Castles et al, 2014; Deng et al, 2017; 朱家贵等, 2022)。声音通讯是动物的重要交流方式之一, 在动物的生存和繁殖中起关键作用, 尤其是鸟类和蛙类(Gerhardt & Huber, 2002; Naguib et al, 2009)。对声音信号的传递模式及信号本身的研究, 有助于深入了解动物声音通讯及声音信号的适应性进化。本文简要介绍了网络分析法中常用的量化指标, 并根据现有的相关研究阐述了如何利用ASNA分析动物的声音交流过程、揭示鸣声相似性的地理格局、解析动物的鸣声结构, 强调了ASNA在动物声音通讯及生物声学研究中的优势。
1 网络分析法的常用指标
网络分析法的一大特点是利用可视化网络图直观展示目标个体间的关系, 图中的节点(nodes/vertices)通常代表个体, 它们之间的连线(edges/lines)则代表个体间的某种关系。研究者可根据实际所需给图中的点和线赋予多种信息, 比如以点的形状、大小、颜色等对不同个体属性加以区分(如性别、年龄), 以连线粗细反映关系的强弱, 以箭头表示行为或信息的传递方向(邓可等, 2019)。网络分析法的另一特点是它具有一系列量化个体或群体社会属性的指标, 个体水平指标用于反映目标个体与其他个体的直接或间接关系及紧密程度, 群体水平指标用于衡量群体的总体结构或稳定性。
中心度(centrality)是网络分析法中的一个基本概念, 它根据目标个体在网络中的位置来衡量其在群体结构中的重要性(Freeman, 1979; Friedkin, 1991)。常用的指标有节点中心度(degree centrality)、接近中心度(closeness centrality)、中介中心度(betweenness centrality)、特征向量中心度(eigenvector centrality)等。节点中心度基于与目标个体直接相连接的个体数量, 数量越多, 中心度指数就越大。在有向网络(directed network)中, 节点中心度又分为点入度(in-degree)和点出度(out-degree), 分别表示目标个体接收和发出的数量。交往强度(strength)是加权的节点中心度, 它可以同时反映连接的数量及程度(如频次、持续时间)。节点中心度与交往强度量化了个体间的直接关系, 接近中心度、中介中心度和特征向量中心度则是量化个体间间接关系的常用指标。接近中心度基于目标个体与其他所有个体的最短路径长度(shortest path length)之和(Freeman, 1979), 接近中心度高的个体, 其信息传播能力更强、速度更快。中介中心度基于目标个体与网络中每两个个体最短路径长度之和(Freeman, 1979), 用于衡量个体的间接关系对其在群体结构中的位置的影响。特征向量中心度基于目标个体邻居的中心度之和, 通过与目标个体所连接的个体的重要性来反映其自身的影响力(Newman, 2004)。这3个中心度指标所反映的个体属性具有相似之处, 但每个指标都包含了某种特定信息, 各自从不同的角度衡量个体在网络结构中的地位。
常用的群体水平指标有网络直径(diameter)、平均路径长度(average path length)和聚集系数(clustering coefficient)等。网络直径是网络中的最长路径, 平均路径长度是指所有节点之间所有路径长度的平均值(Wey et al, 2008)。直径和平均路径长度都反映了网络中节点的总体连接程度, 它们的值越小, 连接越紧密。聚集系数描述的是目标个体周边个体的聚集程度, 用于揭示网络中的“亚群体”结构(Wey et al, 2008)。关于网络指标, 现有大量文献和专著对其概念和算法进行了更加全面完整的介绍(Croft et al, 2008; Makagon et al, 2012; Brent, 2015; Farine & Whitehead, 2015)。
2 网络分析法的应用
2.1 量化声音交流格局
声音通讯广泛存在于昆虫、蛙类、兽类、鸟类等不同动物类群(Gerhardt & Huber, 2002; Chen & Wiens, 2020), 在动物的社会交往及繁殖求偶中扮演着重要角色。由于声音信号能远距离传播, 除了预期的信号接收者, 范围内的所有同类都可能接收到声音信号所传递的信息, 而个体对该信号的鸣叫回应本身又能引起更多个体的回应(Peake, 2005)。此外, 声音信号的异种窃听(heterospecific eavesdropping)现象十分普遍, 比如捕食者对猎物求偶信号的利用(Zuk & Kolluru, 1998)或个体利用异种的警报鸣叫提早发现并回避捕食者(Magrath et al, 2015)。因此, 声音信号连接的往往不只是两个个体, 而是多个个体所形成的网络, 声音信号所携带的信息就在这个网络中传播。McGregor和Dabelsteen (1996)首次定义了通讯网络(communication network), 在随后的近10年里, 学者们通过野外观察和回放等手段, 从网络的视角探讨了远距离信号传递及信号窃听如何影响动物的行为决策(McGregor, 2005)。然而, 将ASNA应用于声音通讯研究、建立并量化声音通讯网络(vocal communication network), 目前只有零星报道(Snijders & Naguib, 2017; Kulahci et al, 2018)。
理毛(grooming)是灵长类动物维系社会纽带的重要方式, 该行为反映了个体间的社会关系(Silk et al, 2006; Lehmann et al, 2007)。人们认为, 联系鸣叫(contact calls)也具有维系社会纽带的作用, 可以看作是一种远距离的理毛行为(grooming-at-a-distance) (Dunbar, 2003)。Kulahci等(2015)利用ASNA分析了环尾狐猴(Lemur catta)的理毛行为与声音交流之间的关系, 记录了每个事件中的行为发出者和接收者(即谁给谁理毛, 谁发出鸣叫、谁给予了鸣叫回应)。结果显示, 环尾狐猴的理毛网络与声讯网络显著相关(图1), 且相较于理毛对象, 个体对鸣叫回应对象的选择性更强。回放实验进一步证实了个体在声音交流中倾向于回应之前有过理毛互动的群体成员, 表明环尾狐猴的声音交流可用于衡量个体间的社会纽带(Kulahci et al, 2015)。声音信号所携带的信息本质上是一种公开信息, 除了社群内部成员, 群体外的个体也能获取并加以利用。Morino等(2021)收集了7个合趾猿(Symphalangus syndactylus)群体之间的鸣叫数据, 利用ASNA探究了群体成员变化对声讯网络结构的影响。分析结果显示, 相较于成员稳定的群体, 成员组成发生了变化的群体能获得更多来自其他群体的鸣叫回应, 证实了合趾猿能通过声音交流判断其他社群的稳定性(Morino et al, 2021)。动物的声音交流与社会交往密切相关, 对声讯格局的探究有助于深入了解个体间的社会关系, 尤其是那些在野外难以直接观察和追踪的动物类群(McGregor & Peake, 2000)。不少研究表明, 个体在社交网络中的位置与其适合度密切相关(Barocas et al, 2011; Formica et al, 2012; Wey & Blumstein, 2012)。那么, 个体在声讯网络中的位置是否同样可以反映性别、年龄和社会地位等属性?中心度较高的个体能更快地获得和传播信息, 它们是否因此而具有更高的适合度收益?对这些问题的回答, 有助于全面揭示声音交流对动物生存和繁殖的影响。
图1
图1
环尾狐猴(Lemur catta)的理毛网络(A)与声讯网络(B)。
圆圈代表雌性, 矩形代表雄性, 节点的大小代表年龄。线段的粗细代表互动频次, 箭头指向的是被理毛或收到鸣叫回应的个体。蓝色实线表示相互理毛或鸣叫回应, 黑色虚线则表示单向的理毛或鸣叫回应。改自Kulahci等(2015)。
Fig. 1
The grooming network (A) and vocal network (B) from a group of ring-tailed lemurs (Lemur catta).
Circles represents females and squares represents males. Size of the nodes indicates the age. Thickness of the lines indicates the frequency of the interactions and the arrows indicate the recipient of the grooming or vocal response. Solid (blue) lines visualize reciprocal grooming or vocal responses, while dashed (black) lines indicate nonreciprocal interactions or vocal responses. Adapted from Kulahci et al (2015).
蛙类的繁殖求偶高度依赖于声音通讯(Gerhardt & Huber, 2002), 求偶场中此起彼伏的鸣声形成了一个典型的声音通讯网络。雄蛙的广告鸣叫(advertisement calls)不仅是吸引配偶的关键信号, 也是雄性竞争的重要手段。通常, 雄蛙会窃听竞争对手的求偶信号进而调整自己的鸣叫策略, 如改变鸣叫频次或鸣叫时机(Deng et al, 2020; Legett et al, 2021)。由此可见, 蛙类的声讯网络结构可能受竞争环境影响。Deng和Cui (2019)利用ASNA定量研究了外来竞争者对仙琴蛙(Nidirana daunchina)种群原有鸣叫格局的影响, 通过记录每次事件的鸣声发出者及回应者, 作者发现尽管声讯网络的拓扑结构发生了改变, 但群体水平的鸣叫活跃性、接近中心度和中介中心度在干扰前后无显著差异。雄性仙琴蛙具有在池塘边缘建造泥穴的习性, 它们通常在洞穴内部或洞穴边鸣叫求偶(Cui et al, 2010, 2012)。因此, 针对个体数量较少的自然种群, 实验者通过方位和鸣声特征就能实现个体识别并记录鸣叫互动(Deng & Cui, 2019)。为研究室内小种群的声讯网络, 研究人员开发了相应的设备和技术, 以便人为控制参与声音交流的成员或声音信号的传递路径(Fernandez et al, 2016; Rychen et al, 2021)。比如, Fernandez等(2017)将斑胸草雀(Taeniopygia guttata)单笼放置, 在每个笼子的顶部安装麦克风, 并设置了不同群体大小和成员组成(图2)。相邻笼子之间的距离相等, 以此控制个体间的距离。通过分析个体间的声音交流, Fernandez等(2017)探究了群体大小和成员组成是否影响个体鸣唱的同步化, 以及配对关系和空间距离对两两个体间鸣唱互动的影响。
图2
图2
群体大小和组成对鸣叫活动影响的实验装置示意。
群体分别由2、4、8只斑胸草雀(Taeniopygia guttata)组成, 每个笼子顶部装有麦克风。配对的雌雄个体被放置于相邻的笼子, 以降低应激性。改自Fernandez等(2017)。
Fig. 2
Graphical representation of the experiment of the impact of group size and composition on vocal activity.
Groups of two, four and eight zebra finches (Taeniopygia guttata) were formed, with one bird per cage and one microphone on the top of each cage. Pair mates were put in neighboring cages to reduce stress. Adapted from Fernandez et al (2017).
在自然条件下, 动物声音交流的动态过程要复杂得多: 参与声音交流的个体数量较多、空间距离较远, 个体所处的位置不断变化, 不同个体的鸣声会出现不同程度的重叠等等。Jenikejew等(2020)以焦点动物法记录了白犀牛(Ceratotherium simum simum)的发声行为及叫声类型, 设定与焦点动物的距离不超过3 m (1只成年白犀牛的最大体长)的个体均为声音信号的接收者。该研究展示了如何基于个体的空间距离建立声讯网络, 但由于数据收集方式的局限性, 不可避免地会漏掉部分交流事件, 从而无法全面、准确地揭示群体成员的声音交流格局。对于自然种群, 想要准确识别每个个体、明确信号的发出者与接收者, 仅通过实验者直接观察或依靠一两个监测设备是难以实现的, 而这些信息恰好是利用ASNA建立声音通讯网络的必要前提。
被动声学监测(passive acoustic monitoring)技术被广泛用于陆生动物的声学研究、物种多样性调查及活动监测(Blumstein et al, 2011; Pérez‐Granados & Traba, 2021), 麦克风阵列(microphone array)能大范围同时记录多个体的鸣声, 并根据声音信号抵达时间的差异定位每个个体(McGregor, 2005; Jones & Ratham, 2009)。另一方面, 随着算法的发展, 人们可基于鸣声特征识别类群、物种、性别、个体以及鸣叫类型(Terry et al, 2005; Bedoya et al, 2014; Gibb et al, 2018)。理论上, 利用被动声学监测技术能准确识别信号的发出者及回应者, 从而记录群体内的声音交流过程, 为全面揭示声讯网络格局的动态变化提供技术支持。
2.2 分析鸣声相似性
ASNA不仅能用于量化各种社交互动(如肢体接触、声音交流、聚群行为), 实际上, 它能量化个体间的任意一种共享属性, 如遗传关系、共享病原体(Rollins et al, 2012; VanderWaal et al, 2014b; Arnberg et al, 2015), 甚至鸣声相似性(Deng et al, 2021)。动物的鸣声特征通常存在个体差异, 这与个体的体型、年龄、性别等都有一定关系。在更大的空间尺度上, 动物鸣声的地理变异也普遍存在。一方面, 环境异质性产生的不同选择压力导致了鸣声的局部适应性进化(Branch & Pravosudov, 2020); 另一方面, 动物的配偶选择或社会学习过程促进了鸣声的地理变异(Henry et al, 2015; Araya-Salas et al, 2019)。方言和文化差异形成后, 性选择压力会增加鸣声的分化程度, 在地理隔离的作用下可能最终导致物种分化(Slabbekoorn & Smith, 2002; Gerhardt, 2013; Wilkins et al, 2013; Wang et al, 2022)。
在现有的相关研究中, Mantel tests (Mantel, 1967)常被用于分析个体(群体)的鸣声相似性与空间距离之间的关系(Akçay et al, 2014; Sosa-López & Mennill, 2014), 判别分析或分层聚类则常被用于评估个体(群体)在鸣声特征上的“聚集”程度(Pérez-Granados et al, 2015; Branch & Pravosudov, 2020)。前者基于空间距离矩阵和鸣声相似性矩阵揭示鸣声的地理格局, 后者则基于鸣声参数的相似性对目标对象进行归类。然而, 仅依靠Mantel tests分析来探究某种特征与鸣声相似性的关系并不总是适用, 而判别或聚类分析无法揭示鸣声相似格局的形成原因。ASNA不仅包含了上述两类分析手段, 还提供了更完善的理论框架和更全面的分析方法, 可用于探究鸣声特征多样化的进化过程, 并通过可视化的网络图予以呈现。
Potvin等(2019)利用ASNA研究了13个灰胸绣眼鸟(Zosterops lateralis)种群的鸣唱共享(song sharing)格局, 他们首先通过鸣唱网络图直观展示了处于相似经度的种群比处于相似纬度的种群有着更高的共享水平。为了探究空间距离能否反映种群间的鸣唱相似性, 他们估算了每个种群的特征向量中心度, 作为衡量目标种群的鸣唱曲目与其他所有种群的总体相似度的指标, 并利用多元回归二次分配程序(multiple regression quadratic assignment procedure, MRQAP)分析了鸣唱共享水平是否受种群间的空间距离、遗传关系及生境类型的影响(Potvin et al, 2019)。MRQAP是常见的网络分析方法, 它是一种特殊形式的Mantel tests, 可以同时检验一个因变量与多个自变量之间的关系(Dekker et al, 2003, 2007)。此外, 根据不同音节是否共同出现在某一种群, Potvin等(2019)建立了音节网络(syllable network)并以模块化(modularity)反映音节的聚集程度, 进而探究聚在一起的音节是否具有相似的特征(如带宽)。
Yoktan等(2011)探究了北非橙簇花蜜鸟(Nectarinia osea)方言的地理格局, 发现鸣唱的聚集模式与种群的地理分布部分相关, 表明种群的拓殖历史在方言的形成中起到一定作用。特征向量中心度较高的种群可以看作是方言的传播者(起源地), 中心度最高的3个种群分布在不同的地理位置, 加之种群的遗传距离与方言地理格局的相关性并不显著, 暗示了社会学习是方言形成与维持的主要驱动力(Yoktan et al, 2011)。除了研究鸣声相似性的地理格局, ASNA也能用于建立个体间的鸣声网络。为了探究个体在鸣声网络中的位置是否影响其繁殖成功, Potvin等(2019)建立了歌带鹀(Melospiza melodia melodia)的音节共享网络, 并估算了每个个体的特征向量中心度和中介中心度, 结果显示歌带鹀的中心度与孵化的雏鸟数量、离巢的雏鸟数量的相关性均不显著。在该研究中, 特征向量中心度反映了目标个体与其他所有个体音节的整体相似度, 而中介中心度则用于衡量目标个体在群体中传递信息的重要性。
2.3 解析鸣声结构
鸟类和兽类通常拥有相对丰富的曲目(repertoire), 许多物种会利用功能性参照鸣叫(functionally referential calls)向同类或异种个体警示特定的危险(Casar & Zuberbuhler, 2012; Suzuki, 2018, 2020)。另一方面, 不同鸣叫以一定顺序排列组合后能表达某种特定的含义, 甚至形成句法(syntax) (Arnold & Zuberbuhler, 2006; Ouattara et al, 2009; Suzuki et al, 2018)。鸟类的鸣唱尤为复杂多变, 某些物种的鸣声由一些以固定的顺序重复出现的单一的音节(syllables)或短语(phrases)组成, 而某些物种的鸣声则由数十个、数百个不同音节或短语组合而成, 且随着社会环境的变化呈现不同的组合方式(Okanoya, 2004)。动物的声音信号常被用于雄性竞争、吸引配偶和社会交往, 由于鸣声结构与其功能密切相关, 对鸣声结构的解析有助于深入理解动物的竞争策略以及声音通讯的进化。
在早期关于鸣声复杂性的研究中, 人们通常关注于单一鸣声参数, 如曲目大小(即不同音节、短语或鸣声类型的总数量)。然而, 单一鸣声参数无法准确、全面地描述具有较大曲目物种的鸣声特征及复杂程度。此外, 马尔科夫链分析(Markov chain analyses)被用于研究不同鸣声单元之间的转换率, 在一定程度上揭示鸣声单元间的传递规律(Bernal et al, 2009; Markowitz et al, 2013; Bhat et al, 2022)。尽管如此, 由于该方法难以清晰反映鸣声序列结构, 以及鸣声单元传递模式与鸣声序列结构间的关系, 因此在分析具有较大曲目的鸣声结构时存在局限性。基于图论和数学模型的ASNA为研究动物鸣声结构提供了新的视角。首先, 利用ASNA可以将一段鸣声序列以网络图的形式呈现, 图中的节点可以代表任意水平的鸣声单元, 如音节、短语或某种叫声。比如, 图3(A)是加州弯嘴嘲鸫(Toxostoma redivivum)的鸣唱频谱图, 鸣唱时长为20 s, 共包含71个短语(共25种类型)。图3(B)和图3(C)分别是基于鸣唱序列建立的无向网络图和有向网络图。鸣声网络图直观展示了短语之间的连接模式和传递顺序, 以及短语的聚集程度(Sasahara et al, 2012)。
图3
图3
加州弯嘴嘲鸫(Toxostoma redivivum)的一段鸣唱序列。
(A)鸣唱序列的频谱图, 每个短语有特定的数字编号, 黄色圆圈中是其他个体的鸣声。(B)和(C)是基于鸣唱序列建立的无向网络和有向网络, 展示了短语的传递模式(省略了短语的自身传递)。改自Sasahara等(2012)。
Fig. 3
Song fragment from a California thrasher (Toxostoma redivivum) recording.
(A) Sound spectrogram of part of a song. Phrases are labeled with their ID numbers. Yellow circles denote background singing of other birds. (B) and (C) are song undirected and directed networks constructed from the song fragment shown in A, which represent transition patterns of phrases (self-transitions are omitted). Adapted from Sasahara et al (2012).
其次, ASNA提供了一系列量化鸣声网络结构的指标, 如网络直径、平均路径长度、聚集系数等。在鸣声网络中, 平均路径长度的值越大, 意味着鸣声序列中音节(或短语等任意的鸣声单元)的序列相对固定; 值越小, 则意味着鸣声更加灵活多变, 音节重复出现的次数较多。聚集系数反映了不同音节在鸣声序列中同时出现、形成小群体的总体趋势, 它的值在0到1之间, 0表示没有形成小群体, 1表示整个网络图形成了一个群体, 即任意两个音节都是相连接的(Deslandes et al, 2014)。利用聚集系数和平均最短路径(average shortest path), 可以得到一个评估整体网络结构的指标——小世界系数(small-world coefficient, S), 计算公式为:
其中, C和L分别为观测数据得到的聚集系数和平均最短路径, Crand和Lrand分别为随机化网络得到的聚集系数和平均最短路径。若小世界系数的值大于1, 且聚集的音节在一定程度上形成了模块化, 则表示鸣声网络中存在小世界(Humphries & Gurney, 2008; Cody et al, 2015)。小世界的存在表明某些鸣声单元之间的路径较短、连接紧密, 这意味着它们在鸣声序列中经常“扎堆”出现。Allen等(2019)利用连续13年的监测数据分析了座头鲸(Megaptera novaeangliae)的鸣声结构, 发现每年的鸣声网络都能形成明显的小世界网络, 表明座头鲸具有稳定的鸣声结构特征。
上述指标从不同角度揭示了网络中鸣声单元之间的连接性(connectivity), 传递性(transitivity)则是另一个量化鸣声结构的重要指标(Sasahara et al, 2012; Deng et al, 2022)。一个复杂的网络通常包含了反复出现的模式, 被称为网络模体(network motif) (Milo et al, 2002)。在鸣声网络中, 模体则是反复出现的一段鸣声序列。如果一个特定的鸣声单元总是出现在某些鸣声单元之后, 便会形成确定性模体(deterministic motif, 图4A, B), 反之则为非确定性模体(non-deterministic motif, 图4C, D) (Sasahara et al, 2012)。因此, 传递模体(transition motif)反映了鸣声单元在出现顺序上的变异性。由于传递具有方向性, 所以在分析鸣声单元传递模式时通常使用有向网络(directed network)。每个鸣声单元之前或之后都可能连接着其他不同的单元, 根据每个鸣声单元的点入度和点出度所占的比例, 便可以估算出鸣声序列的传递模体(Weiss et al, 2014)。对鸣声单元连接方式及传递模式的比较研究, 为进一步探究鸣声的功能、句法以及动物的语音学习(vocal learning)奠定了基础。
图4
图4
四种传递模体的图示。
字母代表不同的鸣声单元, 箭头表示传递方向。(A)单向型; (B)瓶颈型; (C)树枝型; (D)沙漏型。
Fig. 4
Diagrams representing the four types of transition motifs.
Letters indicate different acoustic units, and arrows indicate transition direction between units. (A) One-way; (B) Bottleneck; (C) Branch; (D) Hourglass.
3 结语
本文结合现有的研究实例, 阐述了ASNA在动物声音交流、鸣声相似性及鸣声结构研究中的应用。对动物声音通讯的研究最初只是基于由信号发出者、传播媒介和信号接收者组成的小系统, 20世纪90年代起, 人们开始关注由多个信号发出者和多个接收者组成的通讯网络(McGregor & Peake, 2000)。然而, 长期以来对动物声音通讯网络的探讨, 基本停留在理论描述阶段, 或只有一些简单的分析(McGregor, 2005)。ASNA是一套综合了图论及数学模型的分析工具, 能够真正从“网络”的视角量化动物的声音交流过程, 评估个体在声讯网络中的重要性, 分析个体在信息传递过程中的作用。利用ASNA研究动物的声讯网络尚处于起步阶段, 被动声学监测技术的发展有望促进ASNA在更多动物类群声音交流研究中的应用, 进而增进人们对个体间甚至物种间声音通讯的理解。近年来, 学者们提出了时序网络(time-ordered networks)、多层网络(multilayer network)等概念, 并开发出了相应的分析和作图软件(Blonder et al, 2012; Finn et al, 2019; Finn, 2021), 可用于揭示动物声音通讯格局的动态变化。对声音信号自身的研究, 如分析鸣声的相似性或差异性、解析鸣声的序列特征, ASNA也展现出优于传统分析方法之处。利用ASNA提供的一系列指标量化鸣声的个体差异或种群差异、识别独特的鸣声结构, 将为理解动物方言的形成机制以及信号复杂性的进化过程提供启示。
致谢
感谢两位审稿专家对论文修改提出的宝贵意见和建议。
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Social network analysis has been widely used to investigate the dynamics of social interactions and the evolution of social complexity across a range of taxa. Anuran species are highly dependent on vocal communication in mate choice; however, these species have rarely been the subject of social network analysis. The present study used social network analysis to investigate whether vocal network structures are consistent in Emei music frog (Babina daunchina) after the introduction of a simulated exotic rival of varying competitiveness into the social group. We broadcasted six categories of artificial calls (either highly sexually attractive calls produced from inside male nests or calls of low sexual attractiveness produced outside nests with three, five or seven notes, respectively) to simulate an intruder with different levels of competitiveness. We then constructed vocal networks for two time periods (before and after the disturbance) and quantified three network metrics (strength, closeness, and betweenness) that measure different aspects of individual-level position. We used the mean values of these network metrics to evaluate group-level changes in network structure. We found that the mean strength, mean closeness and mean betweenness were consistent between two time periods in all ponds, despite the fact that the positions of some individuals had changed markedly after disturbance. In addition, there was no significant interaction effect between period and numbers of notes on the three network metrics. These finding suggest that the structure of vocal networks in Emei music frogs remain stable at the group level after a conspecific disturbance, regardless of the intruder's competitiveness.
Network analysis reveals context-dependent structural complexity of social calls in serrate-legged small treefrogs
Male serrate-legged treefrogs adjust competition strategies according to visual or chemical cues from females
Inter-group associations in Mongolian gerbils: Quantitative evidence from social network analysis
DOI:10.1111/1749-4877.12272
PMID:28685954
[本文引用: 1]
Animals often interact non-randomly with conspecifics, and association preferences can differ across life-history stages to maximize individuals' fitness. Mongolian gerbils (Meriones unguiculatus) are a social rodent that live in highly seasonal habitats and display seasonal fluctuations in population density, growth rate and the size of overlapped home ranges. Nevertheless, whether gerbils modify their social relationships at different life-history stages remains unknown. Here, we used social network analysis to examine whether social associations differ between the sexes and between life-history stages in a wild population of Mongolian gerbils. We quantified social attributes at both group level (assortativity) and individual level (social differentiation and degree, closeness and betweenness centrality); these attributes reflect individuals' social preferences and their potential influence on others in the network. We found that both male and female gerbils established fewer inter-group social connections during the food-hoarding season than during the breeding season, revealing constraints on sociality. Similarly, during the food-hoarding season, degree centrality and social differentiation increased significantly whereas closeness and betweenness centrality decreased significantly. Together, these results suggest that gerbils have relatively more partners and preferred associations and decreased influence over others in the network during the food-hoarding season. In addition, we found no significant difference in any of the social attribute between males and females, but there was a significant interaction effect between sex and season on degree, closeness and betweenness centrality. Our results demonstrate that Mongolian gerbils adjust their association strategies to adapt to the changes of life history. Such adjustments may balance the costs/benefits associated with survival and reproduction.© 2017 The Authors. Integrative Zoology published by International Society of Zoological Sciences, Institute of Zoology/Chinese Academy of Sciences and John Wiley & Sons Australia, Ltd.
Social network analysis and its application in animal behavior
社会网络分析法及其在动物行为学研究中的应用
Call characteristic network reveal geographical patterns of call similarity: Applying network analysis to frog’s call research
The structure of an avian syllable syntax network
DOI:10.1016/j.beproc.2014.04.010
PMID:24792818
[本文引用: 1]
A common result in recent linguistic studies on word association networks is that their topology can often be described by Zipf's law, in which most words have few associations, whereas a few words are highly connected. However, little is known about syntactic networks in more rudimentary communication systems, which could represent a window into the early stages of language evolution. In this study, we investigate the syntactic network formed by syllable associations in the song of the oscine bird Troglodytes musculus. We use methods recently developed in the context of the study of complex networks to assess topological characteristics in the syntactic networks of T. musculus. We found statistically significant evidence for nestedness in the syllable association network of T. musculus, indicating network organization around a core of commonly used notes, small-world features, and a non-random degree distribution. Our analyses suggest the possibility of a balance between the maintenance of core notes and the acquisition/loss of rare notes through both cultural drift and improvisation. These results underscore the usefulness of investigating communication networks of other animal species in uncovering the initial steps in the evolution of complex syntax networks. Copyright © 2014 Elsevier B.V. All rights reserved.
The social brain: Mind, language, and society in evolutionary perspective
DOI:10.1146/annurev.anthro.32.061002.093158 URL [本文引用: 1]
On random graphs
When to choose dynamic vs. static social network analysis
DOI:10.1111/1365-2656.12764 URL [本文引用: 1]
Permutation tests for hypothesis testing with animal social network data: Problems and potential solutions
DOI:10.1111/2041-210X.13741
PMID:35873757
[本文引用: 1]
Permutation tests are widely used to test null hypotheses with animal social network data, but suffer from high rates of type I and II error when the permutations do not properly simulate the intended null hypothesis.Two common types of permutations each have limitations. Pre-network (or datastream) permutations can be used to control 'nuisance effects' like spatial, temporal or sampling biases, but only when the null hypothesis assumes random social structure. Node (or node-label) permutation tests can test null hypotheses that include nonrandom social structure, but only when nuisance effects do not shape the observed network.We demonstrate one possible solution addressing these limitations: using pre-network permutations to adjust the values for each node or edge before conducting a node permutation test. We conduct a range of simulations to estimate error rates caused by confounding effects of social or non-social structure in the raw data.Regressions on simulated datasets suggest that this 'double permutation' approach is less likely to produce elevated error rates relative to using only node permutations, pre-network permutations or node permutations with simple covariates, which all exhibit elevated type I errors under at least one set of simulated conditions. For example, in scenarios where type I error rates from pre-network permutation tests exceed 30%, the error rates from double permutation remain at 5%.The double permutation procedure provides one potential solution to issues arising from elevated type I and type II error rates when testing null hypotheses with social network data. We also discuss alternative approaches that can provide robust inference, including fitting mixed effects models, restricted node permutations, testing multiple null hypotheses and splitting large datasets to generate replicated networks. Finally, we highlight ways that uncertainty can be explicitly considered and carried through the analysis.© 2021 The Authors. Methods in Ecology and Evolution published by John Wiley & Sons Ltd on behalf of British Ecological Society.
Constructing, conducting and interpreting animal social network analysis
DOI:10.1111/1365-2656.12418
PMID:26172345
[本文引用: 2]
1. Animal social networks are descriptions of social structure which, aside from their intrinsic interest for understanding sociality, can have significant bearing across many fields of biology. 2. Network analysis provides a flexible toolbox for testing a broad range of hypotheses, and for describing the social system of species or populations in a quantitative and comparable manner. However, it requires careful consideration of underlying assumptions, in particular differentiating real from observed networks and controlling for inherent biases that are common in social data. 3. We provide a practical guide for using this framework to analyse animal social systems and test hypotheses. First, we discuss key considerations when defining nodes and edges, and when designing methods for collecting data. We discuss different approaches for inferring social networks from these data and displaying them. We then provide an overview of methods for quantifying properties of nodes and networks, as well as for testing hypotheses concerning network structure and network processes. Finally, we provide information about assessing the power and accuracy of an observed network. 4. Alongside this manuscript, we provide appendices containing background information on common programming routines and worked examples of how to perform network analysis using the r programming language. 5. We conclude by discussing some of the major current challenges in social network analysis and interesting future directions. In particular, we highlight the under-exploited potential of experimental manipulations on social networks to address research questions.© 2015 The Authors. Journal of Animal Ecology published by John Wiley & Sons Ltd on behalf of the British Ecological Society.
A new semi-automated method for assessing avian acoustic networks reveals that juvenile and adult zebra finches have separate calling networks
Social networks are often inferred from spatial associations, but other parameters like acoustic communication are likely to play a central role in within group interactions. However, it is currently difficult to determine which individual initiates vocalizations, or who responds to whom. To this aim, we designed a method that allows analyzing group vocal network while controlling for spatial networks, by positioning each group member in equidistant individual cages and analyzing continuous vocal interactions semi-automatically. We applied this method to two types of zebra finch groups, composed of either two adult females and two juveniles, or four young adults (juveniles from the first groups). Young often co-occur in the same social group as adults but are likely to have a different social role, which may be reflected in their vocal interactions. Therefore, we tested the hypothesis that the social structure of the group influences the parameters of the group vocal network. We found that groups including juveniles presented periods with higher level of activity than groups composed of young adults. Using two types of analyses (Markov analysis and cross-correlation), we showed that juveniles as well as adults were more likely to respond to individuals of their own age-class (i.e. to call one after another, in terms of turn-taking, and within a short time-window, in terms of time delay). When juveniles turned into adulthood, they showed adult characteristics of vocal patterns. Together our results suggest that vocal behavior changes during ontogeny, and individuals are more strongly connected with individuals of the same age-class within acoustic networks.
Impact of group size and social composition on group vocal activity and acoustic network in a social songbird
DOI:10.1016/j.anbehav.2017.03.013 URL [本文引用: 4]
Multilayer network analyses as a toolkit for measuring social structure
DOI:10.1093/cz/zoaa079
PMID:33654493
[本文引用: 2]
The formalization of multilayer networks allows for new ways to measure sociality in complex social systems, including groups of animals. The same mathematical representation and methods are widely applicable across fields and study systems, and a network can represent drastically different types of data. As such, in order to apply analyses and interpret the results in a meaningful way the researcher must have a deep understanding of what their network is representing and what parts of it are being measured by a given analysis. Multilayer social networks can represent social structure with more detail than is often present in single layer networks, including multiple "types" of individuals, interactions, or relationships, and the extent to which these types are interdependent. Multilayer networks can also encompass a wider range of social scales, which can help overcome complications that are inherent to measuring sociality. In this paper, I dissect multilayer networks into the parts that correspond to different components of social structures. I then discuss common pitfalls to avoid across different stages of multilayer network analyses-some novel and some that always exist in social network analysis but are magnified in multi-layer representations. This paper serves as a primer for building a customized toolkit of multilayer network analyses, to probe components of social structure in animal social systems.© The Author(s) (2021). Published by Oxford University Press on behalf of Editorial Office, Current Zoology.
The use of multilayer network analysis in animal behaviour
DOI:10.1016/j.anbehav.2018.12.016
PMID:31772393
[本文引用: 1]
Network analysis has driven key developments in research on animal behaviour by providing quantitative methods to study the social structures of animal groups and populations. A recent formalism, known as, has advanced the study of multifaceted networked systems in many disciplines. It offers novel ways to study and quantify animal behaviour through connected 'layers' of interactions. In this article, we review common questions in animal behaviour that can be studied using a multilayer approach, and we link these questions to specific analyses. We outline the types of behavioural data and questions that may be suitable to study using multilayer network analysis. We detail several multilayer methods, which can provide new insights into questions about animal sociality at individual, group, population and evolutionary levels of organization. We give examples for how to implement multilayer methods to demonstrate how taking a multilayer approach can alter inferences about social structure and the positions of individuals within such a structure. Finally, we discuss caveats to undertaking multilayer network analysis in the study of animal social networks, and we call attention to methodological challenges for the application of these approaches. Our aim is to instigate the study of new questions about animal sociality using the new toolbox of multilayer network analysis.
Fitness consequences of social network position in a wild population of forked fungus beetles (Bolitotherus cornutus)
DOI:10.1111/j.1420-9101.2011.02411.x
PMID:22092581
[本文引用: 1]
Social networks describe the pattern of intraspecific interactions within a population. An individual's position in a social network often is expected to influence its fitness, but only a few studies have examined this relationship in natural populations. We investigated the fitness consequences of network position in a wild beetle population. Copulation success of male beetles positively covaried with strength (a measure of network centrality) and negatively covaried with clustering coefficient (CC) (a measure of cliquishness). Further analysis using mediation path models suggested that the activity level of individuals drove the relationships between strength and fitness almost entirely. In contrast, selection on CC was not explained by individual behaviours. Although our data suggest that social network position can experience strong sexual selection, it is also clear that the relationships between fitness and some network metrics merely reflect variation in individual-level behaviours.© 2011 The Authors. Journal of Evolutionary Biology © 2011 European Society For Evolutionary Biology.
A matrix approach to the analysis of sociometric data: Preliminary report
Linking social and spatial networks to viral community phylogenetics reveals subtype-specific transmission dynamics in African lions
DOI:10.1111/1365-2656.12751
PMID:28884827
[本文引用: 1]
Heterogeneity within pathogen species can have important consequences for how pathogens transmit across landscapes; however, discerning different transmission routes is challenging. Here, we apply both phylodynamic and phylogenetic community ecology techniques to examine the consequences of pathogen heterogeneity on transmission by assessing subtype-specific transmission pathways in a social carnivore. We use comprehensive social and spatial network data to examine transmission pathways for three subtypes of feline immunodeficiency virus (FIV ) in African lions (Panthera leo) at multiple scales in the Serengeti National Park, Tanzania. We used FIV molecular data to examine the role of social organization and lion density in shaping transmission pathways and tested to what extent vertical (i.e., father- and/or mother-offspring relationships) or horizontal (between unrelated individuals) transmission underpinned these patterns for each subtype. Using the same data, we constructed subtype-specific FIV co-occurrence networks and assessed what combination of social networks, spatial networks or co-infection best structured the FIV network. While social organization (i.e., pride) was an important component of FIV transmission pathways at all scales, we find that FIV subtypes exhibited different transmission pathways at within- and between-pride scales. A combination of social and spatial networks, coupled with consideration of subtype co-infection, was likely to be important for FIV transmission for the two major subtypes, but the relative contribution of each factor was strongly subtype-specific. Our study provides evidence that pathogen heterogeneity is important in understanding pathogen transmission, which could have consequences for how endemic pathogens are managed. Furthermore, we demonstrate that community phylogenetic ecology coupled with phylodynamic techniques can reveal insights into the differential evolutionary pressures acting on virus subtypes, which can manifest into landscape-level effects.© 2017 The Authors. Journal of Animal Ecology © 2017 British Ecological Society.
Centrality in social networks conceptual clarification
DOI:10.1016/0378-8733(78)90021-7 URL [本文引用: 3]
Theoretical foundations for centrality measures
DOI:10.1086/229694 URL [本文引用: 1]
Geographic variation in acoustic communication: Reproductive character displacement and speciation
Emerging opportunities and challenges for passive acoustics in ecological assessment and monitoring
DOI:10.1111/2041-210X.13101 URL [本文引用: 1]
Community structure in social and biological networks
Dialects in animals: Evidence, development and potential functions
DOI:10.12966/abc.05.03.2015 URL [本文引用: 1]
Network ‘small-world-ness’: A quantitative method for determining canonical network equivalence
Proximity-based vocal networks reveal social relationships in the Southern white rhinoceros
DOI:10.1038/s41598-020-72052-0
PMID:32934303
[本文引用: 1]
Vocal communication networks can be linked to social behaviour, allowing a deeper understanding of social relationships among individuals. For this purpose, the description of vocal dyads is fundamental. In group-living species, this identification is based on behavioural indicators which require a high level of reactivity during social interactions. In the present study, we alternatively established a proximity-based approach to investigate whether sex-specific differences in vocal communication reflect social behaviour in a species with rather loose social associations and low levels of reactivity: the Southern white rhinoceros (Ceratotherium simum simum). We performed audio- and video recordings of 30 captive animals from seven groups. Vocal networks for the four most common call types were constructed by considering conspecifics at close distance (≤ 1 body length) to the sender as potential receivers. The analysis of the resulting unidirectional structures showed that not only the sex of the sender but also the sex of the potential receiver, the quality of social interactions (affiliative or agonistic) as well as association strength predict the intensity of vocal interactions between group members. Thus, a proximity-based approach can be used to construct vocal networks providing information about the social relationships of conspecifics-even in species with loose social associations where behavioural indicators are limited.
Blind location and separation of callers in a natural chorus using a microphone array
DOI:10.1121/1.3158924 URL [本文引用: 1]
Social network theory in the behavioural sciences: Potential applications
DOI:10.1007/s00265-007-0445-8
PMID:32214613
[本文引用: 1]
Social network theory has made major contributions to our understanding of human social organisation but has found relatively little application in the field of animal behaviour. In this review, we identify several broad research areas where the networks approach could greatly enhance our understanding of social patterns and processes in animals. The network theory provides a quantitative framework that can be used to characterise social structure both at the level of the individual and the population. These novel quantitative variables may provide a new tool in addressing key questions in behavioural ecology particularly in relation to the evolution of social organisation and the impact of social structure on evolutionary processes. For example, network measures could be used to compare social networks of different species or populations making full use of the comparative approach. However, the networks approach can in principle go beyond identifying structural patterns and also can help with the understanding of processes within animal populations such as disease transmission and information transfer. Finally, understanding the pattern of interactions in the network (i.e. who is connected to whom) can also shed some light on the evolution of behavioural strategies.© Springer-Verlag 2007.
Animal social networks: An introduction
DOI:10.1007/s00265-009-0747-0 URL [本文引用: 1]
Consistent individual variation across interaction networks indicates social personalities in lemurs
DOI:10.1016/j.anbehav.2017.11.012 URL [本文引用: 1]
Dynamic relationships between information transmission and social connections
DOI:10.1016/j.tree.2019.02.007 URL [本文引用: 1]
Lemurs groom-at-a-distance through vocal networks
DOI:10.1016/j.anbehav.2015.09.016 URL [本文引用: 4]
The evolutionary and ecological consequences of animal social networks: Emerging issues
DOI:10.1016/j.tree.2014.04.002 URL [本文引用: 2]
The dual benefits of synchronized mating signals in a Japanese treefrog: Attracting mates and manipulating predators
Group size, grooming and social cohesion in primates
DOI:10.1016/j.anbehav.2006.10.025 URL [本文引用: 1]
A method of matrix analysis of group structure
The social network structure of a wild meerkat population: 2. Intragroup interactions
DOI:10.1007/s00265-009-0820-8 URL [本文引用: 1]
Eavesdropping on heterospecific alarm calls: From mechanisms to consequences
DOI:10.1111/brv.12122
PMID:24917385
[本文引用: 1]
Animals often gather information from other species by eavesdropping on signals intended for others. We review the extent, benefits, mechanisms, and ecological and evolutionary consequences of eavesdropping on other species' alarm calls. Eavesdropping has been shown experimentally in about 70 vertebrate species, and can entail closely or distantly related species. The benefits of eavesdropping include prompting immediate anti-predator responses, indirect enhancement of foraging or changed habitat use, and learning about predators. Eavesdropping on heterospecifics can provide more eyes looking for danger, complementary information to that from conspecifics, and potentially information at reduced cost. The response to heterospecific calls can be unlearned or learned. Unlearned responses occur when heterospecific calls have acoustic features similar to that used to recognize conspecific calls, or acoustic properties such as harsh sounds that prompt attention and may allow recognition or facilitate learning. Learning to recognize heterospecific alarm calls is probably essential to allow recognition of the diversity of alarm calls, but the evidence is largely indirect. The value of eavesdropping on different species is affected by problems of signal interception and the relevance of heterospecific alarm calls to the listener. These constraints on eavesdropping will affect how information flows among species and thus affect community function. Some species are 'keystone' information producers, while others largely seek information, and these differences probably affect the formation and function of mixed-species groups. Eavesdroppers might also integrate alarm calls from multiple species to extract relevant and reliable information. Eavesdropping appears to set the stage for the evolution of interspecific deception and communication, and potentially affects communication within species. Overall, we now know that eavesdropping on heterospecific alarm calls is an important source of information for many species across the globe, and there are ample opportunities for research on mechanisms, fitness consequences and implications for community function and signalling evolution. © 2014 The Authors. Biological Reviews © 2014 Cambridge Philosophical Society.
Social network dynamics predict hormone levels and behavior in a highly social cichlid fish
How can social network analysis contribute to social behavior research in applied ethology?
DOI:10.1016/j.applanim.2012.02.003 URL [本文引用: 1]
The detection of disease clustering and a generalized regression approach
Long-range order in canary song
Communication networks
Communication networks: Social environments for receiving and signalling behaviour
DOI:10.1007/s102110000015 URL [本文引用: 2]
Using social network analysis of mixed-species groups in African savannah herbivores to assess how community structure responds to environmental change
Network motifs: Simple building blocks of complex networks
DOI:10.1126/science.298.5594.824
PMID:12399590
[本文引用: 1]
Complex networks are studied across many fields of science. To uncover their structural design principles, we defined "network motifs," patterns of interconnections occurring in complex networks at numbers that are significantly higher than those in randomized networks. We found such motifs in networks from biochemistry, neurobiology, ecology, and engineering. The motifs shared by ecological food webs were distinct from the motifs shared by the genetic networks of Escherichia coli and Saccharomyces cerevisiae or from those found in the World Wide Web. Similar motifs were found in networks that perform information processing, even though they describe elements as different as biomolecules within a cell and synaptic connections between neurons in Caenorhabditis elegans. Motifs may thus define universal classes of networks. This approach may uncover the basic building blocks of most networks.
Who shall survive? A new approach to the problem of human interrelations
Communication network reflects social instability in a wild siamang (Symphalangus syndactylus) population
DOI:10.1007/s10764-021-00227-1 URL [本文引用: 2]
Modularity and community structure in networks
Song syntax in Bengalese finches:Proximate and ultimate analyses
Social network analysis: A powerful strategy, also for the information sciences
DOI:10.1177/016555150202800601 URL [本文引用: 1]
Campbell’s monkeys concatenate vocalizations into context-specific call sequences
Eavesdropping in communication networks
Habitat fragmentation effects and variations in repertoire size and degree of song sharing among close dupont’s lark Chersophilus duponti populations
DOI:10.1007/s10336-015-1310-6 URL [本文引用: 1]
Estimating bird density using passive acoustic monitoring: A review of methods and suggestions for further research
DOI:10.1111/ibi.12944 URL [本文引用: 1]
The dynamics of animal social networks: Analytical, conceptual, and theoretical advances
Applying network analysis to birdsong research
DOI:10.1016/j.anbehav.2019.06.012
[本文引用: 4]
By studying animal vocalizations such as birdsong, our capacity to record and interpret acoustic data has opened many opportunities for objective studies of animal behaviour, song evolution, physiology and ecology. However, the analysis of such data sets is often complex, and can vary between research teams, study species and theoretical approach. We test the use of network analysis in categorical birdsong data sets, focusing on four main applications: (1) quantifying and describing patterns of song sharing between individuals and/or populations; (2) understanding factors driving, and the implications of, an individual's position within a song-sharing network; (3) analysing (song or syllable) transfer patterns; and (4) investigating how environmental factors influence song-sharing networks. This exercise provides an excellent example of the advantages of sharing methodologies across disciplines within behavioural ecology and will hopefully inform future studies focused on different aspects of song sharing and cultural evolution by providing new tools and techniques for analysis. (C) 2019 The Association for the Study of Animal Behaviour. Published by Elsevier Ltd.
Conducting social network analysis with animal telemetry data: Applications and methods using spatsoc
DOI:10.1111/2041-210X.13215
[本文引用: 1]
We present spatsoc, an r package for conducting social network analysis with animal telemetry data. Animal social network analysis is a method for measuring relationships between individuals to describe social structure. Proximity-based social networks are generated from animal telemetry data by grouping relocations temporally and spatially, using thresholds that are informed by the characteristics of the species and study system. spatsoc fills a gap in r packages by providing flexible functions, explicitly for animal telemetry data, to generate edge lists and gambit-of-the-group data, perform data-stream randomization, and generate group by individual matrices. The implications of spatsoc are that current users of animal telemetry or otherwise georeferenced data for movement or spatial analyses will have access to efficient and intuitive functions to generate social networks.
Building genetic networks using relatedness information: A novel approach for the estimation of dispersal and characterization of group structure in social animals
DOI:10.1111/j.1365-294X.2012.05492.x
PMID:22335253
[本文引用: 1]
Natal dispersal is an important life history trait driving variation in individual fitness, and therefore, a proper understanding of the factors underlying dispersal behaviour is critical to many fields including population dynamics, behavioural ecology and conservation biology. However, individual dispersal patterns remain difficult to quantify despite many years of research using direct and indirect methods. Here, we quantify dispersal in a single intensively studied population of the cooperatively breeding chestnut-crowned babbler (Pomatostomus ruficeps) using genetic networks created from the combination of pairwise relatedness data and social networking methods and compare this to dispersal estimates from re-sighting data. This novel approach not only identifies movements between social groups within our study sites but also provides an estimation of immigration rates of individuals originating outside the study site. Both genetic and re-sighting data indicated that dispersal was strongly female biased, but the magnitude of dispersal estimates was much greater using genetic data. This suggests that many previous studies relying on mark-recapture data may have significantly underestimated dispersal. An analysis of spatial genetic structure within the sampled population also supports the idea that females are more dispersive, with females having no structure beyond the bounds of their own social group, while male genetic structure expands for 750 m from their social group. Although the genetic network approach we have used is an excellent tool for visualizing the social and genetic microstructure of social animals and identifying dispersers, our results also indicate the importance of applying them in parallel with behavioural and life history data.© 2012 Blackwell Publishing Ltd.
A system for controlling vocal communication networks
DOI:10.1038/s41598-021-90549-0
PMID:34045536
[本文引用: 1]
Animal vocalizations serve a wide range of functions including territorial defense, courtship, social cohesion, begging, and vocal learning. Whereas many insights have been gained from observational studies and experiments using auditory stimulation, there is currently no technology available for the selective control of vocal communication in small animal groups. We developed a system for real-time control of vocal interactions among separately housed animals. The system is implemented on a field-programmable gate array (FPGA) and it allows imposing arbitrary communication networks among up to four animals. To minimize undesired transitive sound leakage, we adopted echo attenuation and sound squelching algorithms. In groups of three zebra finches, we restrict vocal communication in circular and in hierarchical networks and thereby mimic complex eavesdropping and middleman situations.
Some aspects of parent-offspring and sibling relations in a group of rhesus-monkeys, with a discussion of grooming
Structural design principles of complex bird songs: A network-based approach
Social network theory: New insights and issues for behavioral ecologists
DOI:10.1007/s00265-009-0725-6 URL [本文引用: 1]
Social relationships among adult female baboons (Papio cynocephalus) I. Variation in the strength of social bonds
DOI:10.1007/s00265-006-0249-2 URL [本文引用: 1]
Can multilayer networks advance animal behavior research?
DOI:10.1016/j.tree.2018.03.008 URL [本文引用: 1]
Bird song, ecology and speciation
DOI:10.1098/rstb.2001.1056 URL [本文引用: 1]
Social networks and health
DOI:10.1146/annurev.soc.34.040507.134601 URL [本文引用: 1]
Communication in animal social networks
The vocal behavior of the brown-throated wren (Troglodytes brunneicollis): Song structure, repertoires, sharing, syntax, and diel variation
DOI:10.1007/s10336-013-1024-6 URL [本文引用: 1]
Alarm calls evoke a visual search image of a predator in birds
Other species’ alarm calls evoke a predator-specific search image in birds
DOI:10.1016/j.cub.2020.04.062 URL [本文引用: 1]
Call combinations in birds and the evolution of compositional syntax
The role of vocal individuality in conservation
Identifying the individuals within a population can generate information on life history parameters, generate input data for conservation models, and highlight behavioural traits that may affect management decisions and error or bias within census methods. Individual animals can be discriminated by features of their vocalisations. This vocal individuality can be utilised as an alternative marking technique in situations where the marks are difficult to detect or animals are sensitive to disturbance. Vocal individuality can also be used in cases were the capture and handling of an animal is either logistically or ethically problematic. Many studies have suggested that vocal individuality can be used to count and monitor populations over time; however, few have explicitly tested the method in this role. In this review we discuss methods for extracting individuality information from vocalisations and techniques for using this to count and monitor populations over time. We present case studies in birds where vocal individuality has been applied to conservation and we discuss its role in mammals.
Linking social and pathogen transmission networks using microbial genetics in giraffe (Giraffa camelopardalis)
DOI:10.1111/1365-2656.12137 URL [本文引用: 1]
Quantifying microbe transmission networks for wild and domestic ungulates in Kenya
DOI:10.1016/j.biocon.2013.11.008 URL [本文引用: 1]
Machine learning reveals cryptic dialects that explain mate choice in a songbird
DOI:10.1038/s41467-022-28881-w
PMID:35347115
[本文引用: 1]
Culturally transmitted communication signals - such as human language or bird song - can change over time through cultural drift, and the resulting dialects may consequently enhance the separation of populations. However, the emergence of song dialects has been considered unlikely when songs are highly individual-specific, as in the zebra finch (Taeniopygia guttata). Here we show that machine learning can nevertheless distinguish the songs from multiple captive zebra finch populations with remarkable precision, and that 'cryptic song dialects' predict strong assortative mating in this species. We examine mating patterns across three consecutive generations using captive populations that have evolved in isolation for about 100 generations. We cross-fostered eggs within and between these populations and used an automated barcode tracking system to quantify social interactions. We find that females preferentially pair with males whose song resembles that of the females' adolescent peers. Our study shows evidence that in zebra finches, a model species for song learning, individuals are sensitive to differences in song that have hitherto remained unnoticed by researchers.© 2022. The Author(s).
The use of network analysis to study complex animal communication systems:A study on nightingale song
Social attributes and associated performance measures in marmots: Bigger male bullies and weakly affiliating females have higher annual reproductive success
DOI:10.1007/s00265-012-1358-8 URL [本文引用: 1]
Social network analysis of animal behaviour: A promising tool for the study of sociality
DOI:10.1016/j.anbehav.2007.06.020 URL [本文引用: 2]
Precision and power in the analysis of social structure using associations
DOI:10.1016/j.anbehav.2007.08.022 URL [本文引用: 1]
Evolutionary divergence in acoustic signals: Causes and consequences
DOI:10.1016/j.tree.2012.10.002 URL [本文引用: 1]
Grooming networks reveal intra- and intersexual social relationships in Macaca thibetana
DOI:10.1007/s10329-018-00707-8 URL [本文引用: 1]
Vocal dialect and genetic subdivisions along a geographic gradient in the orange-tufted sunbird
DOI:10.1007/s00265-011-1149-7 URL [本文引用: 2]
Social network analysis of animal behavioral ecology: A cross-discipline approach
Social network analysis (SNA) is a framework used to study the structure of societies. As an umbrella term that encompasses various tools of graph theory and mathematical models to visualize networks, SNA allows researchers to detect and quantify patterns in social networks. Within SNA, individuals are not independent, but are symbiotic or linked with one another in a network. Given its powerful analytical tools, SNA is capable of addressing a range of animal behaviors, and has accordingly become increasingly popular in behavioral ecology studies examining such notions as mate choice/sexual selection, cooperation, information flow and disease transition, behavioral strategies of individuals, fitness consequences of sociality and network stability. Nevertheless, SNA it relatively underutilized among Chinese behavioral ecologists. This study aims at highlighting the benefits of SNA in studying animal behaviors in order to promote greater utilization of SNA within Chinese studies. By first introducing social network theory and demonstrating how social networks can influence individual and collective behaviors, this paper provide a prospective overview of SNA's general utilization for the study of animal behavioral ecology as well as promising directions in the overall use of SNA.
社会关系网络分析在行为生态学中的跨学科应用
Bird species diversity based on animal social network analysis—An example using banding data from Dongzhai National Reserve
社会网络分析方法在鸟类物种多样性分析中的应用——以董寨国家级自然保护区5.5 d环志数据为例
Exploitation of sexual signals by predators and parasitoids
DOI:10.1086/420412 URL [本文引用: 1]
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