中国哺乳动物形态、生活史和生态学特征数据集
A dataset on the morphological, life-history and ecological traits of the mammals in China
通讯作者: *E-mail:jiangzg@ioz.ac.cn;eric.ameca08@alumni.imperial.ac.uk
编委: 王彦平
责任编辑: 周玉荣
收稿日期: 2021-12-13 接受日期: 2022-01-29
基金资助: |
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Corresponding authors: *E-mail:jiangzg@ioz.ac.cn;eric.ameca08@alumni.imperial.ac.uk
Received: 2021-12-13 Accepted: 2022-01-29
物种特征是生物对生存环境适应和响应的表现, 反映了物种的生态位、适合度和生态功能。特征数据库的建立和共享是研究生物多样性维持与丧失、物种进化与适应、生态过程与生态系统功能、物种对气候变化和人类干扰响应、种内与种间关系等的基础。中国是世界哺乳动物物种数最多的国家之一, 然而目前中国还没有包含哺乳动物形态、生活史、生态学和地理分布等物种特征的数据库。我们系统查阅了文献和各种数据资料, 共收集整理出中国有分布记录的754种哺乳动物(包括近些年野外绝灭种、分布存疑种)的体重、脑容量、体长、尾长、前臂长(翼手目)、后足长、耳长、性成熟时间、妊娠期、窝崽数、年窝数、世代长度、食性、活动模式、是否特有种、濒危等级、海拔范围、栖息地类型、栖息地宽度、动物地理界、生物群系、分布型、动物地理区划和分布省份或水域等24个生态特征数据。在这些特征中, 除了分布省份或水域及是否特有种外, 其余特征数据均存在不同程度的缺失, 数据的完整度为30%‒100%。本数据库收录的哺乳动物种数为目前中国哺乳动物种数的上限, 为中国哺乳动物研究提供了基础数据, 推进中国哺乳动物多样性信息共享和深度挖掘。 数据库(集)基本信息简介
数据库(集)名称 中国哺乳动物形态、生活史和生态学特征数据集 作者 丁晨晨, 梁冬妮, 信文培, 李春旺, Eric I. Ameca, 蒋志刚 通讯作者 蒋志刚(jiangzg@ioz.ac.cn), Eric I. Ameca (eric.ameca08@alumni.imperial.ac.uk) 时间范围 截止到2021年12月 地理区域 地理范围为中华人民共和国 文件大小 295 kb 数据格式 *.xlsx 数据链接 http://dataopen.info/home/datafile/index/id/228
http://doi.org/10.24899/do.202112001
https://www.biodiversity-science.net/fileup/1005-0094/DATA/2021520.zip 数据库(集)组成 数据集共包括1个数据文件和1个数据描述文件, 包括754种哺乳动物24个物种特征
关键词:
Species traits reflect the species’ ecological function and fitness. The trait data play a vital role in studying biodiversity maintenance and loss, species evolution and adaptation, ecological interactions and processes, ecosystem functions, and species responses to both climate change and human pressures. China is one of the countries with the richest mammal diversity in the world, so far, there is no comprehensive resource of morphological, life history, ecological and geographical distribution data of the mammals in China. We compiled 24 traits data of 754 Chinese mammals (including recently regional extinct species and those species with disputed taxonomy and distribution) between 2008 and 2021 through systematic literature review and dataset integration, referred to mammalian monographs and field guides. The main sources used in completing the dataset were: the life history traits were retrieved from A Field Guide to the Mammals of China (Pan et al, Dataset/Database Profile
Title A dataset on the morphological, life-history and ecological traits of the mammals in China Authors Chenchen Ding, Dongni Liang, Wenpei Xin, Chunwang Li, Eric I. Ameca, Zhigang Jiang Corresponding authors Zhigang Jiang (jiangzg@ioz.ac.cn), Eric I. Ameca (eric.ameca08@alumni.imperial.ac.uk) Time range Until December 2021 Geographical scope The study region is the People’s Republic of China File size 295 kb Data format *.xlsx Data link http://dataopen.info/home/datafile/index/id/228
http://doi.org/10.24899/do.202112001
https://www.biodiversity-science.net/fileup/1005-0094/DATA/2021520.zip Dataset/Database composition The dataset consists of one subset and one meta-data description file in total. It comprises morphological, life-history and ecological traits of all the 754 mammal species in China.
Keywords:
本文引用格式
丁晨晨, 梁冬妮, 信文培, 李春旺, 蒋志刚 (2022)
Chenchen Ding, Dongni Liang, Wenpei Xin, Chunwang Li, Eric I. Ameca, Zhigang Jiang (2022)
物种编目、分布、性状等是生物多样性研究的基础, 在物种起源与进化、物种形成与灭绝、生物多样性保护等研究中发挥着重要作用(Mi et al, 2021)。物种性状是生物对生存环境的响应和适应, 决定了物种在生态系统中的角色和功能(Wilman et al, 2014; Mammola et al, 2021)。物种特征与物种灭绝风险息息相关。地理分布范围小的物种有更高的灭绝风险, 因为它们更可能遭受自然灾害、遗传漂变和近亲繁殖的影响(Chichorro et al, 2019); 营养级高的物种往往容易受食物链级联效应的影响(Crooks & Soulé, 1999); 妊娠期长、窝崽数少和世代周期长的物种一般很难从种群数量下降的状态恢复(Verde-Arregoitia, 2016); 栖息地和食谱窄的物种, 一旦栖息地或食物资源受到严重破坏, 便难以生存(Boyles & Storm, 2007; Price et al., 2012); 白天活动和树栖的物种通常更容易受到狩猎和森林砍伐等人为活动影响(Tingley et al, 2013; Gaynor et al, 2018); 扩散能力弱的物种更容易受到气候变化和栖息地破坏等因素的威胁。此外, 体型大的物种往往比体型小的物种灭绝风险更高, 可能是因为前者通常数量少、繁殖慢、常常是被捕杀的目标(Cardillo et al, 2005)。在全球环境变化的背景下, 分析物种生活史、生态和地理特征差异、原因和可能后果对保护生物多样性至关重要(Jones et al, 2009; Dawson et al, 2011; Foden et al, 2019)。
目前已有多个全球尺度的脊椎动物性状数据库/数据集建立。例如, Jones等(2009)整合了现存和最近灭绝的哺乳动物的生活史、生态和地理分布特征数据, 建立了PanTHERIA数据库。Wilman等(2014)整合了多个数据源, 建立了几乎包含全球所有现存鸟类(9,993种)和哺乳动物(5,400种)的特征数据集EltonTrait 1.0。该数据集包括体型大小、食性、营养层级和活动模式等生活史特征数据。Soria等(2021)建立了集合数据库COMBINE (COalesced Mammal dataBase of INtrinsic and Extrinsic traits)。COMBINE包含6,234种现存和最近灭绝的哺乳动物的54个特征, 包括形态、繁殖、食性、生物地理、生活习性、物候、活动模式、家域范围和种群密度等信息。然而, 前述特征数据库收录中国哺乳动物最多不超过550种, 各数据库中性状的数量、数据格式不同, 并且同一物种的亚种间生态特征差别可能很大, 所以收集和整合国内的研究数据尤为必要。
中国疆域辽阔, 地貌多样, 气候迥异, 动物区系组成复杂, 是世界上哺乳动物资源最丰富的国家之一。中国也已陆续出版很多有关描述哺乳动物多样性的专著, 如《中国动物志·兽纲》(食肉目: 高耀亭等, 1987; 仓鼠科: 罗泽珣等, 2000; 海兽类: 周开亚, 2004)、《中国哺乳动物分布》(张荣祖, 1997)、《中国濒危动物红皮书: 兽类》(汪松, 1998)、《中国哺乳动物图鉴》(盛和林, 2005)、《中国哺乳动物彩色图鉴》(潘清华等, 2007)、《中国兽类野外手册》(Smith和解焱, 2009)、《中国哺乳动物多样性及地理分布》(蒋志刚等, 2015)、《中国兽类图鉴》(刘少英等, 2019, 2020)和《中国生物多样性红色名录: 脊椎动物 (第一卷)·哺乳动物》(蒋志刚等, 2021)。这些书籍在描述中国哺乳动物自然史、生态学特征、地理分布、濒危状态与保护等方面各有侧重。此外, 由于不同的学者采用不同的分类标准和收录原则, 并且随着时间的推移也不断有物种经厘定、增删和订正, 因此中国哺乳动物物种数量还存在争议(蒋志刚等, 2016, 2017; 余文华等, 2021)。例如, 蒋志刚等(2017)等发表了《中国哺乳动物多样性(第2版)》,共收录中国哺乳动物13目56科248属693种; 蒋志刚等(2021)出版了《中国生物多样性红色名录: 脊椎动物 (第一卷)·哺乳动物》, 收录了中国哺乳动物13目56科248属700种; 魏辅文等(2021)《中国兽类名录2021》收录中国现生兽类686种, 此编目不包含中国局部灭绝种, 如野水牛(Bubalus arnee)、犀牛(Rhinoceros spp.)、高鼻羚羊(Saiga tatarica)等, 未采纳偶蹄类的最新分类系统(Burgin et al, 2018; Mammal Diversity Database, 2021), 而将羚牛(Budorcas spp.)、马鹿(Cervus spp.)、盘羊(Ovis spp.)均分别视为1种; 未收入藏南地区记录的物种, 例如灰獴(Herpestes edwardsii)、印度穿山甲(Manis crassicaudata)、渔猫(Prionailurus viverrinus) (蒋志刚等, 2021)。
中国已建立生物多样性与生态安全大数据平台(
我们通过系统查阅文献和资料, 收集整理了中国754种哺乳动物的体重、脑容量、体长、尾长、前臂长、后足长、耳长、性成熟时间、妊娠期、窝崽数、年窝数、世代长度、食性、家域大小、活动模式、是否特有种、濒危等级、海拔范围、栖息地类型、生物群系、分布型、动物地理区划和分布省份或水域等24个生态特征数据。本数据集以期为哺乳动物宏生态学、进化生物学、生物地理学以及保护生物学研究提供基本信息。
1 数据采集和处理方法
(1)本研究数据收集工作时间为2008‒2021年。根据蒋志刚等(2017, 2021)和魏辅文等(2021)确定中国哺乳动物名录。然后按照国际哺乳动物编目惯例(IUCN, 2021; Mammal Diversity Database, 2021)收入近期区域灭绝和野外灭绝种, 比如犀牛(Rhinoceros spp.)、高鼻羚羊(Saiga tatarica)、爪哇野牛(Bos javanicus)等10种; 按照最新哺乳动物分类系统(Wilson & Mittermeier, 2011; Groves & Grubb, 2013; Mammal Diversity Database, 2021)将羚牛拆分为秦岭羚牛(Budorcas bedfordi)、四川羚牛(B. xizangus)、不丹羚牛(B. whitei)和贡山羚牛(B. taxicolor) 4个独立种, 将盘羊拆分为阿尔泰盘羊(Ovis ammon)、哈萨克盘羊(O. collium)、戈壁盘羊(O. darwini)、西藏盘羊(O. hodgsoni)、华北盘羊(O. jubata)、天山盘羊(O. karelini)和帕米尔盘羊(O. polii) 7个种, 将马鹿拆分为西藏马鹿(Cervus wallichii)、东北马鹿(C. canadensis)和塔里木马鹿(C. hanglu) 3个种, 收录中国新分布记录种越南鼬獾(Melogale cucphuongensis) (Li et al, 2019); 收录藏南地区分布的粗毛兔(Caprolagus hispidus)、懒熊(Melursus ursinus)、恒河豚(Platanista gangetica)等(蒋志刚等, 2017, 2021); 同时也收录了最新发现的物种, 如冯氏白腹鼠(Niviventer fengi) (Ge et al, 2020)、李氏小飞鼠(Priapomys leonardi) (Li et al, 2021)、墨脱鼹(Uropsilus soricipes) (Chen et al, 2021), 最终收录了754种哺乳动物。本数据库收录的哺乳动物种数是目前中国哺乳动物种数的上限。
(2)以《中国濒危动物红皮书: 兽类》(汪松, 1998)、《中国哺乳动物图鉴》(盛和林, 2005)、《中国哺乳动物彩色图鉴》(潘清华, 2007)、《中国兽类野外手册》 (Smith和解焱, 2009)和《中国兽类图鉴》(刘少英等, 2019, 2020)为形态、生活史、繁殖力和生活习性等的基础数据源。以Handbook of the Mammals of the World (Wilson & Mittermeier, 2009, 2011, 2012, 2014, 2018, 2019; Wilson et al, 2016, 2017)和全球哺乳动物性状综合数据集(Soria et al, 2021)为生活史和繁殖特征补充数据源, 以Burger等(2019)和González-Suárez等(2021)为脑容量数据源。
(4)查阅《中国动物地理》(张荣祖, 2011), 获取动物分布型和动物地理区划。把其中2界3亚界7区19亚区的区划图进行了矢量化。对于此书未收录的物种使用物种分布区与区划矢量图层叠加以提取区划结果。
(5)从《中国生物多样性红色名录: 脊椎动物 (第一卷)·哺乳动物》(蒋志刚等, 2021)中收集是否中国特有种、濒危等级和分布省份等特征数据。
(6)此外, 查询了中国生物志库——动物数据库(
(7)若经过上述程序和步骤无法获取数据, 则该数据将被确定为目前缺失(not available, NA, 见数据集链接)。
(8)最后, 计算总物种数中有特征数据的物种数比例及不同目水平的特征数据数量, 即为数据完整度。
2 数据描述
24个特征中, 体重、体长、尾长、前臂长、后足长、耳长6个特征反映哺乳动物形态量度, 其中鲸豚类仅记录体重和体长, 性成熟时间、妊娠时间、窝崽数、年窝数、世代长度反映生活史和繁殖特征; 食性、活动模式反映物种生活习性, 其他分布特征则反映了生物地理状况。具体数据描述见数据集中的数据描述文件。除了是否特有种、翼手目前臂长、分布省份或水域, 其他特征数据均存在不同程度的缺失, 数据完整度为30.11%‒100% (图1)。不同目水平的特征数据完整度见附录1。各变量定义和描述详见数据集中的说明文件。需要说明的是, 由于单一文献覆盖的数据有限, 同一物种不同地理区域的样本数据可能会有差异, 所以不同数据源整合过程中可能会出现相互不一致的情况, 这时我们优先参考包含此特征的国内专著及文献, 选择以区间或者平均值形式表示这些数据。
图1
图1
中国754种哺乳动物24个生态特征数据完整度
Fig. 1
Percentage of data completeness for each of the 24 ecological traits for the 754 mammals in China
3 数据质量控制和评估
本数据集主要从数据准备、数据录入、汇总处理及数据检查四个方面进行。前期准备主要是明确数据源、讨论数据收集的方法和步骤, 并对参与人员的数据收集任务进行分工。数据汇总录入阶段, 考虑同物异名和分类学变动情况, 按照既定的数据收集方法和步骤进行, 以减少人为造成的误差。查询国内外发表的论文和哺乳动物相关性状数据库补充完善。数据检查阶段, 会同作者对获取的数据进行交叉核对, 以确保数据输入的准确性。录入的数据通过质量控制方法进行评估, 确保准确无误后入库。
4 数据使用方法和建议
目前, 中国生物资源库缺乏建设规范与数据标准, 资源质量差异较大, 存在交叉重复和空缺、共享水平参差不齐、信息化水平较低等问题(杨明等, 2021; Huang et al, 2021)。研究生物多样性格局及其成因(Safi et al, 2011)、气候变化背景下灭绝风险脆弱性评估(Zhang et al, 2019; Leclerc et al, 2020)、功能多样性变化(Vandewalle et al, 2010; Oliveira et al, 2016; Carmona et al, 2021)、物种对人类活动和城市化响应程度的种特异性(Santini et al, 2019)和物种保护及管理(Hilbers et al, 2016; Morton et al, 2021)等工作迫切需要建立和共享特征数据库。本数据集将补充和完善中国动物主题数据库(
(1)灭绝风险评估。研究发现, 生态学和生活史特征与灭绝风险显著相关(Purvis et al, 2000; Davidson et al, 2009; Ameca et al, 2014; Pearson et al, 2014)。Carmona等(2021)发现灭绝风险不是随机分布的, 而是局限在体型大、生长速度慢或繁殖力低的物种所占据的某些功能空间。这意味着物种灭绝将导致全球范围内功能集聚和同质化, 导致生态功能策略的丧失和重新排列。由于受到过度利用和生境丧失、人类干扰、气候变化、生物入侵等全球环境变化的影响, 中国有181种哺乳动物处于受威胁等级(蒋志刚等, 2021)。分析哪些特定功能特征会导致中国哺乳动物濒危灭绝, 对中国生物多样性保护有重要意义。Shuai等(2021)收集了中国453个陆生哺乳动物的生物学特征、环境因子和人为干扰数据, 从物种特征和外部因素两个方面比较分析了中国陆生哺乳动物的灭绝风险。结果显示, 物种灭绝风险在各科间并非随机分布, 猴科、长臂猿科、猫科、灵猫科、麝科、鹿科和牛科的物种濒危比例明显高于预测值, 地理分布范围大小是决定中国哺乳动物灭绝脆弱性的最重要因素。
(2)预测物种对气候变化的响应和适应。气候变化给动物的生存带来了压力, 动物正在以各种方式和策略应对全球变化, 比如迁移到更寒冷、更高海拔的地区, 改变生活史中迁徙或繁殖时间以适应物候的变化(Cohen et al, 2018)。还有一些物种, 则通过进化改变了体型, 以便更好地调节体温。例如, Ryding等(2021)发现许多温血动物的喙、腿、尾巴、耳朵的尺寸增加, 表明气候变暖可能导致动物的形态变化。由于不同物种具有不同的进化历史和生态特征, 因此气候变化对群落内物种的影响不同。Boutin和Lane (2014)发现表型可塑性和进化适应是哺乳动物应对气候变化的主要策略。理论预测和观测结果都表明动物形态、生活史和行为模式等影响物种对气候变化的响应(Ameca et al, 2013; Santini et al, 2016; Pacifici et al, 2017; McCain, 2019)。例如, Wen等(2017)研究了中国西南亚热带森林30年间(1986年至2014和2015年)气候变化下啮齿动物海拔分布范围变化, 发现气候变暖对啮齿动物在海拔分布变化上的影响呈现出明显的物种异质性。体型较大、栖息地宽度较窄以及饮食需求更专一的物种, 其物种丰度加权范围中心更有可能表现出向高海拔迁移。
(4)研究人类活动影响下野生动物生态适应机制。动物生活史和生态特征决定了物种响应环境变化和人类活动的模式, 从而影响物种和群落生态过程(Mayfield et al, 2010; Cadotte et al, 2015)。在人为干扰压力下, 野生动物的丧失会对生态系统功能产生级联效应, 扰乱自然生态系统中的生态过程和平衡(Bogoni et al, 2020)。因此, 量化研究人类活动对野生动物的影响是应对野生动物物种丧失的必要前提和基础, 可为系统保护规划和生态系统功能恢复提供科学依据。Li等(2021)基于中国横断山区45个长期红外相机监测样地的数据, 将哺乳动物分为食肉动物、草食动物和杂食动物三个营养级, 分析了不同类型人类活动对哺乳动物群落结构、功能及行为的影响及哺乳动物对人类活动的响应模式。结果表明群落中个体平均体重、食肉类占比、功能多样性均随人类活动强度和改造指数的增加而显著下降, 表明人类活动致使兽类群落功能同质化、多样性丧失以及夜行性行为显著改变。
作者分工
丁晨晨负责数据收集、整理、核对及论文撰写和修改; 梁冬妮和信文培主要承担物种特征数据补充与核对; 李春旺主要承担数据检查和论文修改; Eric I. Ameca主要承担论文构思与修改; 蒋志刚作为中国哺乳动物数据库项目(XDA19050240)负责人, 承担数据库结构、数据整理安排协调与论文修改。
附录 Supplementary Material
附录1 中国754种哺乳动物13个目24个生态特征数据完整度
Appendix 1 Percentage of data completeness for 24 traits of the 754 Chinese mammals in 13 Order
致谢
感谢审稿专家对本文提出的宝贵修改意见; 感谢中国科学院动物研究所野生动物与行为生态研究组平晓鸽、李立立、方红霞在前期数据收集工作方面的支持和帮助。
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DOI:10.17520/biods.2021201
[本文引用: 1]
中国现有1,445种鸟类, 是世界上鸟类物种数最多的国家之一。物种特征反应了生物有机体的功能和适合度, 在生态学、进化生物学和保护生物学研究中具有重要作用。但是, 目前还没有关于我国鸟类生活史、生态学和地理分布等物种特征的完整数据库。通过系统查阅文献和各种数据资料, 本文共收集整理出了中国1,445种鸟类17个功能特征数据: 体重、体长、嘴峰长、翅长、尾长、跗蹠长、食性、窝卵数、卵大小、卵体积、巢址、巢的类型、集群状况、迁徙状况、是否特有种、地理分布范围和分布省份等。在这些特征中, 除迁徙状况、是否特有种、地理分布范围和分布省份外, 其余特征数据均存在不同程度的缺失, 数据的完整度为60.83%‒100%。本数据库是目前关于中国鸟类最新和最全的物种特征数据库, 期望能为我国鸟类生态学、进化生物学、生物地理学、保护生物学等研究提供支持。 数据库(集)基本信息简介 数据库(集)名称 中国鸟类的生活史和生态学特征数据集 作者 王彦平, 宋云枫, 钟雨茜, 陈传武, 赵郁豪, 曾頔, 吴亦如, 丁平 通讯作者 王彦平(wangyanping@njnu.edu.cn) 时间范围 截止到2021年5月 地理区域 地理区域为全中国, 包括香港、台湾和澳门等地区 文件大小 1.0 MB 数据格式 *.xlsx 数据链接 http://dataopen.info/home/datafile/index/id/222 http://doi.org/10.24899/do.202109003 https://www.biodiversity-science.net/fileup/1005-0094/DATA/2021201.zip 数据库(集)组成 数据集共包括1个数据文件, 包括中国1,445种鸟类的17个物种特征
Catalogue of mammals in China (2021)
中国兽类名录(2021版)
Heterogeneous distributional responses to climate warming: Evidence from rodents along a subtropical elevational gradient
DOI:10.1186/s12898-017-0128-x URL [本文引用: 1]
EltonTraits 1.0: Species-level foraging attributes of the world’s birds and mammals
Main progress of biodiversity conservation in China and some suggestions for further work
我国生物多样性保护的主要进展及工作建议
Taxonomic and systematic research progress of mammals in China
中国兽类分类与系统演化研究进展
Biodiversity science and macroecology in the era of big data
DOI:10.17520/biods.2017037
[本文引用: 1]
High-quality biodiversity data are the scientific basis for understanding the origin and maintenance of biodiversity and dealing with its extinction risk. Currently, we identify at least seven knowledge shortfalls or gaps in biodiversity science, including the lack of knowledge on species descriptions, species geographic distributions, species abundance and population dynamics, evolutional history, functional traits, interactions between species and the abiotic environment, and biotic interactions. The arrival of the current era of big data offers a potential solution to address these shortfalls. Big data mining and its applications have recently become the frontier of biodiversity science and macroecology. It is a challenge for ecologists to utilize and effectively analyze the ever-growing quantity of biodiversity data. In this paper, I review several biodiversity-related studies over global, continental, and regional scales, and demonstrate how big data approaches are used to address biodiversity questions. These examples include forest cover changes, conservation ecology, biodiversity and ecosystem functioning, and the effect of climate change on biodiversity. Furthermore, I summarize the current challenges facing biodiversity data collection, data processing and data analysis, and discuss potential applications of big data approaches in the fields of biodiversity science and macroecology.
大数据时代的生物多样性科学与宏生态学
DOI:10.17520/biods.2017037
[本文引用: 1]
高质量的生物多样性数据是认知生物多样性的起源和维持机制及应对其丧失风险的科学基础。当前, 在新物种发现、已知物种的地理分布、种群数量与时空动态、物种进化史、功能性状、物种与环境之间以及物种与物种之间的相互作用等7个方面都存在着知识上的空缺。大数据时代的到来为弥补这些知识空缺提供了可能,大数据的挖掘及其应用最近已成为国际生物多样性与宏生态学研究的前沿内容。如何有效地利用和分析不断增长的生物多样性大数据是生物多样性研究面临的一个极大挑战。本文通过全球、大陆和区域尺度上的研究案例展示了大数据在生物多样性研究中应用的新进展, 内容涉及森林覆盖变化、保护生态学、生物多样性与生态系统功能、气候变化对生物多样性的影响等。最后, 对大数据在生物多样性研究中存在的数据采集、处理和分析等方面的问题进行了总结, 并对其潜在应用前景进行了探讨。
Global assessment of primate vulnerability to extreme climatic events
DOI:10.1038/s41558-019-0508-7 URL [本文引用: 1]
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