Biodiv Sci ›› 2010, Vol. 18 ›› Issue (5): 461-472. DOI: 10.3724/SP.J.1003.2010.461
Special Issue: 生物多样性信息学专题(I)
• Special Topics on Biodiversity Informatics • Previous Articles Next Articles
Congtian Lin1,2, Liqiang Ji1,*()
Received:
2010-01-19
Accepted:
2010-06-11
Online:
2010-09-20
Published:
2010-09-20
Contact:
Liqiang Ji
Congtian Lin, Liqiang Ji. PSDS (predictive species distribution system) 2.0: a system based on GIS and multiple models for predicting potential distribution of species[J]. Biodiv Sci, 2010, 18(5): 461-472.
软件 Software | GIS功能 With GIS | 模型算法 Algorithm | 分布数据类型 Distribution type | 变量类型 Variable type | 预测结果 Result type | 软件来源和重要文献 Software source/Main references |
---|---|---|---|---|---|---|
Desktop GARP | + | 预设规则遗传算法 Genetic Algorithm for Rule-set Production(GARP) | P | Co/Ca | B | desktopgarp/Download.html |
DOMAIN | + | Gower Metric (GM) | P | Co/Ca | Si | Knowledge/Toolkits/domain |
DIVA-GIS | + | 环境包络 Environment Envelope (EE) | P | Co | B | |
Gower Metric距离 Gower Metric Distance (GM) | P | Co/Ca | Si | |||
CLIMEX | + | 生态气候指数 Ecological Index (EI) | P | Co | B | No free link |
PSDS 1.0 | + | 环境包络 Environment Envelope (EE) | P | Co | B | ji@ioz.ac.cn或linct@ioz.ac.cn |
聚类包络 Hierarchical Cluster plus Environmental Envelope (HCEM) | P | Co | B | |||
Biomapper | + | 生态位因子分析 Ecological Niche Factor Analysis (ENFA) | P | Co | Su | products.html |
MaxEnt | - | 最大熵模型 Maximum Entropy (MaxEnt) | P | Co | Pro | ~schapire/maxent |
GeoSVM | - | 支持向量机 Support Vector Machine (SVM) | P & A | Co/Ca | B | |
Neuroet | - | 人工神经网络 Artificial Neural Network (ANN) | P & A | Co/Ca | B | |
SPECIES | - | 人工神经网络 Artificial Neural Network (ANN) | P & A | Co/Ca | B | |
Agroclimatic Library | - | 农业气候相似距 Agricultural Similar Distance (ASD) | P | Co | Si | No open link |
Random Forest | - | 随机森林 Random Forest (RF) | P & A | Co/Ca | B |
Table 1 General description of the software applications and models for predicting species’ distribution
软件 Software | GIS功能 With GIS | 模型算法 Algorithm | 分布数据类型 Distribution type | 变量类型 Variable type | 预测结果 Result type | 软件来源和重要文献 Software source/Main references |
---|---|---|---|---|---|---|
Desktop GARP | + | 预设规则遗传算法 Genetic Algorithm for Rule-set Production(GARP) | P | Co/Ca | B | desktopgarp/Download.html |
DOMAIN | + | Gower Metric (GM) | P | Co/Ca | Si | Knowledge/Toolkits/domain |
DIVA-GIS | + | 环境包络 Environment Envelope (EE) | P | Co | B | |
Gower Metric距离 Gower Metric Distance (GM) | P | Co/Ca | Si | |||
CLIMEX | + | 生态气候指数 Ecological Index (EI) | P | Co | B | No free link |
PSDS 1.0 | + | 环境包络 Environment Envelope (EE) | P | Co | B | ji@ioz.ac.cn或linct@ioz.ac.cn |
聚类包络 Hierarchical Cluster plus Environmental Envelope (HCEM) | P | Co | B | |||
Biomapper | + | 生态位因子分析 Ecological Niche Factor Analysis (ENFA) | P | Co | Su | products.html |
MaxEnt | - | 最大熵模型 Maximum Entropy (MaxEnt) | P | Co | Pro | ~schapire/maxent |
GeoSVM | - | 支持向量机 Support Vector Machine (SVM) | P & A | Co/Ca | B | |
Neuroet | - | 人工神经网络 Artificial Neural Network (ANN) | P & A | Co/Ca | B | |
SPECIES | - | 人工神经网络 Artificial Neural Network (ANN) | P & A | Co/Ca | B | |
Agroclimatic Library | - | 农业气候相似距 Agricultural Similar Distance (ASD) | P | Co | Si | No open link |
Random Forest | - | 随机森林 Random Forest (RF) | P & A | Co/Ca | B |
生物气候因子 Bioclimatic factors | 因子分析 Factor analysis | KMO | Bartlett’s 检验 Bartlett’s test | 新的因子 New factors |
---|---|---|---|---|
平均月温差 Mean diurnal range 年平均湿度 Annual mean humidity 年降水 Annual precipitation 年平均温度 Annual mean temperature 降水的季节变化因子 Precipitation seasonality 温度的季节变化因子 Temperature seasonality 等温因子 Isothermality 年温差 Temperature annual range | 因子提取方法: 主成分分析; 旋转方法: Varimax with Kaiser Normalization. Extracted method: Principal Component Analysis. Rotation Method: Varimax with Kaiser Normalization. | 0.665 | Approx. Chi-Square =7,046,789.32 df=28 Sig.=0.000 | 平均生物气候因子 Mean bioclimatic factor |
季节性生物气候因子 Seasonal bioclimatic factor | ||||
霜降月平均降水 Mean precipitation of frost free month 最湿润季节的降水 Precipitation of wettest quarter 最湿润月份的降水 Precipitation of wettest month 最温暖月份的降水 Precipitation of warmest quarter 最干燥月份的降水 Precipitation of driest quarter 最冷季节的降水 Precipitation of coldest quarter 最干燥月份的降水 Precipitation of driest month 最冷月份的最低温度 Min temperature of coldest month 最冷季节的平均温度 Mean temperature of coldest quarter 最暖月的最高温度 Max temperature of warmest month 最暖季的平均温度 Mean temperature of warmest quarter 最湿润季节的平均温度 Mean temperature of wettest quarter 霜降月的平均温度 Mean temperature of frost free month 平均霜降天数 Mean frost days 最干燥季节的平均温度 Mean temperature of driest quarter | 同上 Same as above | 0.875 | Approx. Chi-Square =25,734,237.85 df=105 Sig.=0.000 | 与降水相关的极端生物气候因子Harsh bioclimatic factor related to precipitation |
与温度相关的极端生物气候因子Harsh bioclimatic factor related to temperature |
Table 2 The result of factor analysis of the bioclimatic variables and significance test
生物气候因子 Bioclimatic factors | 因子分析 Factor analysis | KMO | Bartlett’s 检验 Bartlett’s test | 新的因子 New factors |
---|---|---|---|---|
平均月温差 Mean diurnal range 年平均湿度 Annual mean humidity 年降水 Annual precipitation 年平均温度 Annual mean temperature 降水的季节变化因子 Precipitation seasonality 温度的季节变化因子 Temperature seasonality 等温因子 Isothermality 年温差 Temperature annual range | 因子提取方法: 主成分分析; 旋转方法: Varimax with Kaiser Normalization. Extracted method: Principal Component Analysis. Rotation Method: Varimax with Kaiser Normalization. | 0.665 | Approx. Chi-Square =7,046,789.32 df=28 Sig.=0.000 | 平均生物气候因子 Mean bioclimatic factor |
季节性生物气候因子 Seasonal bioclimatic factor | ||||
霜降月平均降水 Mean precipitation of frost free month 最湿润季节的降水 Precipitation of wettest quarter 最湿润月份的降水 Precipitation of wettest month 最温暖月份的降水 Precipitation of warmest quarter 最干燥月份的降水 Precipitation of driest quarter 最冷季节的降水 Precipitation of coldest quarter 最干燥月份的降水 Precipitation of driest month 最冷月份的最低温度 Min temperature of coldest month 最冷季节的平均温度 Mean temperature of coldest quarter 最暖月的最高温度 Max temperature of warmest month 最暖季的平均温度 Mean temperature of warmest quarter 最湿润季节的平均温度 Mean temperature of wettest quarter 霜降月的平均温度 Mean temperature of frost free month 平均霜降天数 Mean frost days 最干燥季节的平均温度 Mean temperature of driest quarter | 同上 Same as above | 0.875 | Approx. Chi-Square =25,734,237.85 df=105 Sig.=0.000 | 与降水相关的极端生物气候因子Harsh bioclimatic factor related to precipitation |
与温度相关的极端生物气候因子Harsh bioclimatic factor related to temperature |
Fig. 3 The result map shows the suitable area predicted by the EELF model in the relative part of China (A) and the overlay analysis of the EELF result with the map of recorded counties (B). The most area predicted to be suitable is similar to the recorded area. The sites outlined by the two black polygons are predicted to be suitable for target species without historical records. The area in the upper polygon is in the middle to west of Hubei Province with very high suitability but without records. The area in the other polygon in the east of Guizhou Province is the distribution area of the relative species Syrmaticus ellioti.
Fig. 4 The result map from EELF pseudo-absences + C-SVC (A) and the overlay analysis of the result map with the map of recorded counties (B). The most area predicted to be suitable for target species is similar to the recorded area.
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