生物多样性 ›› 2014, Vol. 22 ›› Issue (1): 51-65. DOI: 10.3724/SP.J.1003.2014.13169
所属专题: 基因组和生物多样性
收稿日期:
2013-07-19
接受日期:
2013-10-14
出版日期:
2014-01-20
发布日期:
2014-02-10
通讯作者:
陈明生
基金资助:
Received:
2013-07-19
Accepted:
2013-10-14
Online:
2014-01-20
Published:
2014-02-10
Contact:
Chen Mingsheng
摘要:
水稻所在的稻属(Oryza)共有24个左右的物种。由于野生稻含有大量的优良农艺性状基因, 在水稻遗传学研究中日益受到重视。随着国际稻属基因组计划的开展, 越来越多的稻属基因组序列被测定, 稻属成为进行比较、功能和进化基因组学研究的模式系统。近期开展的一系列研究对稻属不同基因组区段以及全基因组序列的比较分析, 揭示了稻属在基因组大小、基因移动、多倍体进化、常染色质到异染色质的转化以及着丝粒区域的进化等方面的分子机制。转座子的活性以及转座子因非均等重组或非法重组而造成的删除, 对稻属基因组的扩增和收缩具有重要作用。DNA双链断裂修复介导的基因移动, 特别是非同源末端连接, 是稻属基因组非共线性基因形成的主要来源。稻属基因组从常染色质到异染色质的转换过程, 伴随着转座子的大量扩增、基因片段的区段性和串联重复以及从基因组其他位置不断捕获异染色质基因。对稻属不同物种间基因拷贝数、特异基因和重要农艺性状基因的进化等研究, 可揭示稻属不同物种间表型和适应性差异的分子基础, 将加速水稻的育种和改良。
刘铁燕, 陈明生 (2014) 稻属植物的基因组进化. 生物多样性, 22, 51-65. DOI: 10.3724/SP.J.1003.2014.13169.
Tieyan Liu,Mingsheng Chen (2014) Genome evolution of Oryza. Biodiversity Science, 22, 51-65. DOI: 10.3724/SP.J.1003.2014.13169.
图1 稻属系统进化树(参照Goicoechea et al., 2010)。图中虚线表示四倍体种可能的二倍体父母本。黑色圆点为母本, 空心圆点为不确定的二倍体物种基因组。Leersia perrieri为外类群。17个国际稻属基因组计划(OMAP)中用于基因组研究的代表性物种列在图右侧。
Fig. 1 Phylogenetic tree of Oryza. Dashed lines indicate putative diploid parents involved in the formation of polyploids. Filled in circles indicate maternal parent, and unfilled circles indicate unidentified diploid genome. Leersia perrieri represents the outgroup. Seventeen representative Oryza species that are currently subjected to genomic investigation as part of the International Oryza Map Alignment Project (OMAP) are indicated next to respective phylogenetic branches.
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