生物多样性 ›› 2015, Vol. 23 ›› Issue (2): 252-253.doi: 10.17520/biods.2015055

所属专题: 中国生物物种编目进展

• • 上一篇    下一篇

植物学名校订工具

王钧杰, 陈国科, 马克平*()   

  1. 中国科学院植物研究所植被与环境变化国家重点实验室, 北京 100093
  • 收稿日期:2015-03-05 接受日期:2015-03-16 出版日期:2015-03-20
  • 通讯作者: 马克平 E-mail:kpma@ibcas.ac.cn
  • 基金项目:
    科技部植物标本标准化整理、整合及共享平台建设项目(2005DKA21401)

Tools for standardization of plant names

Junjie Wang, Guoke Chen, Keping Ma*()   

  1. State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing 100093
  • Received:2015-03-05 Accepted:2015-03-16 Online:2015-03-20
  • Contact: Ma Keping E-mail:kpma@ibcas.ac.cn

附图1

Taxonomic Name Resolution Service的操作界面。a: 输入文本框, 可以直接把一列名称复制到该文本框, 点击Upload and Submit List可切换为导入文本文件的文本框, 点击Retrieve Results则会显示输入验证码的文本框; b: 设置栏, 有4个项供调整, 分别为处理模式、是否进行模糊匹配、数据源、科名依据; c: 输出文本框。"

附图2

Taxonstand校订案例使用的文本文件, 这个案例包含5个物种名称。用TNRS和Plantminer校订时, 需删去表头(第一行)。"

1 Boyle B, Hopkins N, Lu Z, Grey JAR, Mozzherin D, Rees T, Matasci N, Narro ML, Piel WH, Mckay SJ, Lowry S, Freeland C, Peet RK, Enquist RJ (2013) The taxonomic name resolution service: an online tool for automated standardization of plant names.BMC Bioinformatics, 14, 16.
2 Carvalho GH, Cianciaruso MV, Batalha MA (2010) Plantminer: a web tool for checking and gathering plant species taxonomic information.Environmental Modelling & Software, 25, 815-816.
3 Cayuela L, Granzow-de la Cerda Í, Albuquerque FS, Golicher DJ (2012) Taxonstand: an R package for species names standardisation in vegetation databases.Methods in Ecology and Evolution, 3, 1078-1083.
4 Cayuela L, Oksanen J, Cayuela ML (2014) Package “Taxonstand”..
5 Liu S, Liu B, Zhu XY (2013) Corrections of wrongly spelled scientific names in Flora Reipublicae Popularis Sinicae.Journal of Systematics and Evolution, 51, 231-234.
6 Rees T (2014) Taxamatch, an algorithm for near (‘fuzzy’) matching of scientific names in taxonomic databases.PLoS ONE, 9, e107510.
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