家养动物的起源与驯化研究进展
收稿日期: 2009-06-11
录用日期: 2009-06-26
网络出版日期: 2009-07-20
基金资助
国家基础科学研究973项目(2007CB815700);国家基础科学研究973项目(2006CB102100);云南省科学技术厅基金项目(30621092)
Advances in research of the origin and domestication of domestic animals
Received date: 2009-06-11
Accepted date: 2009-06-26
Online published: 2009-07-20
动物的驯化是新石器时代农业革命的主要内容之一, 导致了人类生活方式从狩猎向畜牧的转变。开展家养动物起源与驯化的研究, 不仅有助于了解人类社会的发展史和人工选择下动物的进化过程, 而且有助于开展家养动物的良种选育和遗传多样性保护, 因此该研究领域受到了人们的长期关注。近年来, 随着更多考古证据的发现与分子遗传学的发展, 人们对于家养动物的起源与驯化有了更深入的认识。本文对家养动物起源与驯化研究中一些基本问题的研究方法和进展进行了综述。文章第一部分介绍了家养动物的野生祖先、起源地、起源时间、建群者大小和扩散路线等问题; 第二部分则涉及家养动物驯化的条件、过程、性状改变及其遗传机制等方面。最后指出了家养动物起源与驯化研究中依然存在的问题, 并对未来研究发展的趋势进行了讨论。
李晶, 张亚平 . 家养动物的起源与驯化研究进展[J]. 生物多样性, 2009 , 17(4) : 319 -329 . DOI: 10.3724/SP.J.1003.2009.09150
Animal domestication was one of the major contributory factors of the agricultural revolution during the Neolithic period, which resulted in a shift of paradigm in the contemporary lifestyle of human from hunting to farming. Research on the origin and domestication of animals is helpful not merely to understand the historical as well as societal transformation of human and the process of animal evolution under the influence of artificial selection but also to formulate the strategies for improving breeding varieties and conservation of domestic animals genetic diversity. Thus researches in this domain have received attention for a long time. In recent years, more archeological evidences coupled with recent developments in the molecular genetics approaches have led to a better understanding of the origin and the underlying process of domestication of animals. In this review, we attempt to state the recent progresses in the research methodologies and breakthroughs in molecular understanding of the basic issues related to the origin and subsequent domestication of animals. The first part of the paper deals with the wild ancestors of domestic animals, the sites of origin and time, the founders and the expansion routes. The second part refers to the conditions that had influenced the domestication process, the traits variation and the underlying genetic mechanisms. Finally, several shortcomings of the previous studies have been highlighted and the challenges and strategies for future direction of research have also been discussed.
Key words： origin; domestication; archaeology; molecular genetics
| [1] | Anderson TM, Vonholdt BM, Candille SI, Musiani M, Greco C, Stahler DR, Smith DW, Padhukasahasram B, Randi E, Leonard JA, Bustamante CD, Ostrander EA, Tang H, Wayne RK, Barsh GS (2009) Molecular and evolutionary history of melanism in north American gray wolves. Science, 323,1339-1343. |
| [2] | Andersson L (2001) Genetic dissection of phenotypic diversity in farm animals. Nature Reviews Genetics, 2,130-138. |
| [3] | Andersson L, Georges M (2004) Domestic-animal genomics: deciphering the genetics of complex traits. Nature Reviews Genetics, 5,202-212. |
| [4] | Bazin E, Glémin S, Galtier N (2006) Population size does not influence mitochondrial genetic diversity in animals. Science, 312,570-572. |
| [5] | Beja-Pereira A, England PR, Ferrand N, Jordan S, Bakhiet AO, Abdalla MA, Mashkour M, Jordana J, Taberlet P, Luikart G (2004) African origins of the domestic donkey. Science, 304,1781. |
| [6] | Beja-Pereira A, Caramelli D, Lalueza-Fox C, Vernesi C, Ferrand N, Casoli A, Goyache F, Royo LJ, Conti S, Lari M, Martini A, Ouragh L, Magid A, Atash A, Zsolnai A, Boscato P, Triantaphylidis C, Ploumi K, Sineo L, Mallegni F, Taberlet P, Erhardt G, Sampietro L, Bertranpetit J, Barbujani G, Luikart G, Bertorelle G (2006) The origin of European cattle: evidence from modern and ancient DNA. Proceedings of the National Academy of Sciences, USA, 103,8113-8118. |
| [7] | Bj?rnerfeldt S, Webster MT, Vilà C (2006) Relaxation of selective constraint on dog mitochondrial DNA following domestication. Genome Research, 16,990-994. |
| [8] | Bradley DG, Magee D (2006) Genetics and the origins of domestic cattle. In: Documenting Domestication: New Genetics and Archaeological Paradigm (eds. Zeder MA, Emshwiller E, Smith BD, Bradley DG), pp.317-328. University of California Press, California. |
| [9] | Bruford MW, Bradley DG, Luikart G (2003) DNA markers reveal the complexity of livestock domestication. Nature Reviews Genetics, 4,900-910. |
| [10] | Case L (2008) Perspectives on domestication: the history of our relationship with man’s best friend. Journal of Animal Science, 86,3245-3251. |
| [11] | Chen SY, Su YH, Wu SF, Sha T, Zhang YP (2005) Mitochondrial diversity and phylogeographic structure of Chinese domestic goats. Molecular Phylogenetics and Evolution, 37,804-814. |
| [12] | Chen SY (陈善元), Zhang YP (张亚平) (2006) Genetic method and application for the research on domestical animal origin. Chinese Science Bulletin (科学通报), 51,2469-2475. (in Chinese) |
| [13] | Chessa B, Pereira F, Arnaud F, Amorim A, Goyache F, Mainland I, Kao RR, Pemberton JM, Beraldi D, Stear MJ, Alberti A, Pittau M, Iannuzzi L, Banabazi MH, Kazwala RR, Zhang YP, Arranz JJ, Ali BA, Wang Z, Uzun M, Dione MM, Olsaker I, Holm LE, Saarma U, Ahmad S, Marzanov N, Eythorsdottir E, Holland MJ, Ajmone-Marsan P, Bruford MW, Kantanen J, Spencer TE, Palmarini M (2009) Revealing the history of sheep domestication using retrovirus integrations. Science, 324,532-536. |
| [14] | Coppinger R, Schneider R (1995) Evolution of working dogs. In: The Domestic Dog: Its Evolution, Behavior and Interactions with People(ed. Serpell J). Cambridge University Press, Cambridge. |
| [15] | Cordaux R, Deepa E, Vishwanathan H, Stoneking M (2004) Genetic evidence for the demic diffusion of agriculture to India. Science, 304,1125. |
| [16] | Crawford RD (1995) Origin, history, and distribution of commercial poultry. In: Poultry Production (ed. Hunton P), pp.1-20. Elsevier, Amsterdam. |
| [17] | Cruz F, Vilà C, Webster MT (2008) The legacy of domestication: accumulation of deleterious mutations in the dog genome. Molecular Biology and Evolution, 25,2331-2336. |
| [18] | Darwin C (1871) The Descent of Man and Selection in Relation to Sex. John Murray, London. |
| [19] | Diamond J (1997) Guns, Germs, and Steel: the Fates of Human Societies. W.W. Norton & Co. Inc, New York. |
| [20] | Diamond J (2002) Evolution, consequences and future of plant and animal domestication. Nature, 418,700-707. |
| [21] | Doebley JF, Gaut BS, Smith BD (2006) The molecular genetics of crop domestication. Cell, 127,1309-1321. |
| [22] | Driscoll CA, Menotti-Raymond M, Roca AL, Hupe K, Johnson WE, Geffen E, Harley EH, Delibes M, Pontier D, Kitchener AC, Yamaguchi N, O’Brien SJ, MacDonald DW (2007) The near Eastern origin of cat domestication. Science, 317,519-523. |
| [23] | Edwards CJ, MacHugh DE, Dobney KM, Martin L, Russell N, Horwitz LK, McIntosh SK, MacDonald KC, Helmer D, Tresset A, Vigne JD, Bradley DG (2004) Ancient DNA analysis of 101 cattle remains: limits and prospects. Journal of Archaeological Science, 31,695-710. |
| [24] | Edwards CJ, Bollongino R, Scheu A, Chamberlain A, Tresset A, Vigne JD, Baird JF, Larson G, Ho SY, Heupink TH, Shapiro B, Freeman AR, Thomas MG, Arbogast RM, Arndt B, Bartosiewicz L, Benecke N, Budja M, Chaix L, Choyke AM, Coqueugniot E, D?hle HJ, G?ldner H, Hartz S, Helmer D, Herzig B, Hongo H, Mashkour M, Ozdogan M, Pucher E, Roth G, Schade-Lindig S, Schm?lcke U, Schulting RJ, Stephan E, Uerpmann HP, V?r?s I, Voytek B, Bradley DG, Burger J (2007) Mitochondrial DNA analysis shows a Near Eastern Neolithic origin for domestic cattle and no indication of domestication of European aurochs. Proceedings of the Royal Society of London, Series B, Biological Sciences, 274,1377-1385. |
| [25] | Epstein H, Bichard M (1984) Pig. In: Evolution of Domesticated Animals (ed. Mason SL). Longman, London. |
| [26] | Evershed RP, Payne S, Sherratt AG, Copley MS, Coolidge J, Urem-Kotsu D, Kotsakis K, ?zdo?an M, ?zdo?an AE, Nieuwenhuyse O, Akkermans PM, Bailey D, Andeescu RR, Campbell S, Farid S, Hodder I, Yalman N, ?zba?aran M, Bicakci E, Garfinkel Y, Levy T, Burton MM (2008) Earliest date for milk use in the Near East and southeastern Europe linked to cattle herding. Nature, 455,528-531. |
| [27] | Fang MY, Larson G, Ribeiro HS, Li N, Andersson L (2009) Contrasting mode of evolution at a coat color locus in wild and domestic pigs. PLoS Genetics, 5,e1000341. |
| [28] | Fujii J, Otsu K, Zorzato F, de Leon S, Khanna VK, Weiler JE, O’Brien PJ, MacLennan DH (1991) Identification of a mutation in porcine ryanodine receptor associated with malignant hyperthermia. Science, 253,448-451. |
| [29] | Fumihito A, Miyake T, Sumi S, Takada M, Ohno S, Kondo N (1994) One subspecies of the red junglefowl (Gallus gallus gallus) suffices as the matriarchic ancestor of all domestic breeds. Proceedings of the National Academy of Sciences, USA, 91,12505-12509. |
| [30] | Gibbs RA, Taylor JF, Van Tassell CP, Barendse W, Eversole KA, Gill CA, Green RD, Hamernik DL, Kappes SM, Lien S, Matukumalli LK, McEwan JC, Nazareth LV, Schnabel RD, Weinstock GM, Wheeler DA, Ajmone-Marsan P, Boettcher PJ, Caetano AR, Garcia JF, Hanotte O, Mariani P, Skow LC, Sonstegard TS, Williams JL, Diallo B, Hailemariam L, Martinez ML, Morris CA, Silva LO, Spelman RJ, Mulatu W, Zhao K, Abbey CA, Agaba M, Araujo FR, Bunch RJ, Burton J, Gorni C, Olivier H, Harrison BE, Luff B, Machado MA, Mwakaya J, Plastow G, Sim W, Smith T, Thomas MB, Valentini A, Williams P, Womack J, Woolliams JA, Liu Y, Qin X, Worley KC, Gao C, Jiang H, Moore SS, Ren Y, Song XZ, Bustamante CD, Hernandez RD, Muzny DM, Patil S, San Lucas A, Fu Q, Kent MP, Vega R, Matukumalli A, McWilliam S, Sclep G, Bryc K, Choi J, Gao H, Grefenstette JJ, Murdoch B, Stella A, Villa-Angulo R, Wright M, Aerts J, Jann O, Negrini R, Goddard ME, Hayes BJ, Bradley DG, Barbosa da Silva M, Lau LP, Liu GE, Lynn DJ, Panzitta F, Dodds KG (2009) Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds. Science, 324,528-532. |
| [31] | Giuffra E, Kijas JM, Amarger V, Carlborg O, Jeon JT, Andersson L (2000) The origin of the domestic pig: independent domestication and subsequent introgression. Genetics, 154,1785-1791. |
| [32] | Glazier AM, Nadeau JH, Aitman TJ (2002) Finding genes that underlie complex traits. Science, 298,2345-2349. |
| [33] | Hare B, Brown M, Williamson C, Tomasello M (2002) The domestication of social cognition in dogs. Science, 298,1634-1636. |
| [34] | Hiendleder S, Kaupe B, Wassmuth R, Janke A (2002) Molecular analysis of wild and domestic sheep questions current nomenclature and provides evidence for domestication from two different subspecies. Proceedings of the Royal Society of London, Series B, Biological Sciences, 269,893-904. |
| [35] | Innan H, Kim Y (2004) Pattern of polymorphism after strong artificial selection in a domestication event. Proceedings of the National Academy of Sciences, USA, 101,10667-10672. |
| [36] | Jansen T, Forster P, Levine MA, Oelke H, Hurles M, Renfrew C, Weber J, Olek K (2002) Mitochondrial DNA and the origins of the domestic horse. Proceedings of the National Academy of Sciences, USA, 99,10905-10910. |
| [37] | Jensen JD, Wong A, Aquadro CF (2007) Approaches for identifying targets of positive selection. Trends in Genetics, 23,568-577. |
| [38] | Kadwell M, Fernandez M, Stanley HF, Baldi R, Wheeler JC, Rosadio R, Bruford MW (2001) Genetic analysis reveals the wild ancestors of the llama and the alpaca. Proceedings of the Royal Society of London, Series B, Biological Sciences, 268,2575-2584. |
| [39] | Larson G, Dobney K, Albarella U, Fang MY, Matisoo-Smith E, Robins J, Lowden S, Finlayson H, Brand T, Willerslev E, Rowley-Conwy P, Andersson L, Cooper A (2005) Worldwide phylogeography of wild boar reveals multiple centers of pig domestication. Science, 307,1618-1621. |
| [40] | Larson G, Albarella U, Dobney K, Rowley-Conwy P, Schibler J, Tresset A, Vigne JD, Edwards CJ, Schlumbaum A, Dinu A, B?l??sescu A, Dolman G, Tagliacozzo A, Manaseryan N, Miracle P, Van Wijngaarden-Bakker L, Masseti M, Bradley DG, Cooper A (2007a) Ancient DNA, pig domestication, and the spread of the Neolithic into Europe. Proceedings of the National Academy of Sciences, USA, 104,15276-15281. |
| [41] | Larson G, Cucchi T, Fujita M, Matisoo-Smith E, Robins J, Anderson A, Rolett B, Spriggs M, Dolman G, Kim TH, Thuy NT, Randi E, Doherty M, Due RA, Bollt R, Djubiantono T, Griffin B, Intoh M, Keane E, Kirch P, Li KT, Morwood M, Pedrina LM, Piper PJ, Rabett RJ, Shooter P, Van den Bergh G, West E, Wickler S, Yuan J, Cooper A, Dobney K (2007b) Phylogeny and ancient DNA of Sus provides insights into neolithic expansion in Island Southeast Asia and Oceania. Proceedings of the National Academy of Sciences, USA, 104,4834-4839. |
| [42] | Lau AN, Peng L, Goto H, Chemnick L, Ryder OA, Makova KD (2009) Horse domestication and conservation genetics of Przewalski’s horse inferred from sex chromosomal and autosomal sequences. Molecular Biology and Evolution, 26,199-208. |
| [43] | Leonard JA, Wayne RK, Wheeler J, Valadez R, Guillén S, Vilà C (2002) Ancient DNA evidence for Old World origin of New World dogs. Science, 298,1613-1616. |
| [44] | Lindgren G, Backstr?m N, Swinburne J, Hellborg L, Einarsson A, Sandberg K, Cothran G, Vilà C, Binns M, Ellegren H (2004) Limited number of patrilines in horse domestication. Nature Genetics, 36,335-336. |
| [45] | Li K, Chen Y, Moran C, Fan B, Zhao S, Peng Z (2000) Analysis of diversity and genetic relationships between four Chinese indigenous pig breeds and one Australian commercial pig breed. Animal Genetics, 31,322-325. |
| [46] | Liu YP, Wu GS, Yao YG, Miao YW, Luikart G, Baig M, Beja-Pereira A, Ding ZL, Palanichamy MG, Zhang YP (2006) Multiple maternal origins of chickens: out of the Asian jungles. Molecular Phylogenetics and Evolution, 38,12-19. |
| [47] | Lum JK, McIntyre JK, Greger DL, Huffman KW, Vilar MG (2006) Recent Southeast Asian domestication and Lapita dispersal of sacred male pseudohermaphroditic “tuskers” and hairless pigs of Vanuatu. Proceedings of the National Academy of Sciences, USA, 103,17190-17195. |
| [48] | Manceau V, Després L, Bouvet J, Taberlet P (1999) Systematics of the genus Capra inferred from mitochondrial DNA sequence data. Molecular Phylogenetics and Evolution, 13,504-510. |
| [49] | Marshall F (2000) The origins of domesticated animals in eastern Africa. In: The Origins and Development of African Livestock: Archaeology, Genetics, Linguistics and Ethnography (eds Mcdonald KC, Blench RMpp.191-221. University College London Press, London. |
| [50] | Mosher DS, Quignon P, Bustamante CD, Sutter NB, Mellersh CS, Parker HG, Ostrander EA (2007) A mutation in the myostatin gene increases muscle mass and enhances racing performance in heterozygote dogs. PLoS Genetics, 3,e79. |
| [51] | Naderi S, Rezaei HR, Taberlet P, Zundel S, Rafat SA, Naghash HR, el-Barody MA, Ertugrul O, Pompanon F (2007) Large-scale mitochondrial DNA analysis of the domestic goat reveals six haplogroups with high diversity. PLoS ONE, 2,e1012. |
| [52] | Naderi S, Rezaei HR, Pompanon F, Blum MG, Negrini R, Naghash HR, Balkiz O, Mashkour M, Gaggiotti OE, Ajmone-Marsan P, Kence A, Vigne JD, Taberlet P (2008) The goat domestication process inferred from large-scale mitochondrial DNA analysis of wild and domestic individuals. Proceedings of the National Academy of Sciences, USA, 105,17659-17664. |
| [53] | Outram AK, Stear NA, Bendrey R, Olsen S, Kasparov A, Zaibert V, Thorpe N, Evershed RP (2009) The earliest horse harnessing and milking. Science, 323,1332-1335. |
| [54] | Parker HG, Kim LV, Sutter NB, Carlson S, Lorentzen TD, Malek TB, Johnson GS, DeFrance HB, Ostrander EA, Kruglyak L (2004) Genetic structure of the purebred domestic dog. Science, 304,1160-1164. |
| [55] | Payne WJA, Hodges J (1997) Tropical Cattle: Origins, Breeds and Breeding Policies. Blackwell Science, Oxford, UK. |
| [56] | Pedrosa S, Uzun M, Arranz JJ, Gutiérrez-Gil B, San Primitivo F, Bayón Y (2005) Evidence of three maternal lineages in Near Eastern sheep supporting multiple domestication events. Proceedings of the Royal Society of London, Series B, Biological Sciences, 272,2211-2217. |
| [57] | Rossel S, Marshall F, Peters J, Pilgram T, Adams MD, O’Connor D (2008) Domestication of the donkey: timing, processes, and indicators. Proceedings of the National Academy of Sciences, USA, 105,3715-3720. |
| [58] | Ryder ML (1984) Sheep. In: Evolution of Domesticated Animals (ed. Mason SL). Longman, London. |
| [59] | Savolainen P, Zhang YP, Luo J, Lundeberg J, Leitner T (2002) Genetic evidence for an East Asian origin of domestic dogs. Science, 298,1610-1613. |
| [60] | Sundqvist AK, Bj?rnerfeldt S, Leonard JA, Hailer F, Hedhammar A, Ellegren H, Vilà C (2006) Unequal contribution of sexes in the origin of dog breeds. Genetics, 172,1121-1128. |
| [61] | Sutter NB, Bustamante CD, Chase K, Gray MM, Zhao K, Zhu L, Padhukasahasram B, Karlins E, Davis S, Jones PG, Quignon P, Johnson GS, Parker HG, Fretwell N, Mosher DS, Lawler DF, Satyaraj E, Nordborg M, Lark KG, Wayne RK, Ostrander EA (2007) A single IGF1 allele is a major determinant of small size in dogs. Science, 316,112-115. |
| [62] | Tanaka K, Solis CD, Masangkay JS, Maeda K, Kawamoto Y, Namikawa T (1996) Phylogenetic relation among all living species of the genus Bubalus based on DNA sequences of the cytochrome B gene. Biochemical Genetics, 34,443-452. |
| [63] | Tang ZX (汤在祥), Xu CW (徐辰武) (2008) Advances in research of strategies and methods for analyzing complex traits. Scientia Agricultura Sinica (中国农业科学), 41,1255-1266. (in Chinese with English abstract) |
| [64] | Troy CS, MacHugh DE, Bailey JF, Magee DA, Loftus RT, Cunningham P, Chamberlain AT, Sykes BC, Bradley DG (2001) Genetic evidence for Near-Eastern origins of European cattle. Nature, 410,1088-1091. |
| [65] | Vigne JD, Guilaine J, Debue K, Haye L, Gérard P (2004) Early taming of the cat in Cyprus. Science, 304,259. |
| [66] | Vilà C, Savolainen P, Maldonado JE, Amorim IR, Rice JE, Honeycutt RL, Crandall KA, Lundeberg J, Wayne RK (1997) Multiple and ancient origins of the domestic dog. Science, 276,1687-1689. |
| [67] | Vilà C, Leonard JA, G?therstr?m A, Marklund S, Sandberg K, Lidén K, Wayne RK, Ellegren H (2001) Widespread origins of domestic horse lineages. Science, 291,474-477. |
| [68] | Vilà C, Seddon J, Ellegren H (2005) Genes of domestic mammals augmented by backcrossing with wild ancestors. Trends in Genetics, 21,214-218. |
| [69] | Vincek V, O’huigin C, Satta Y, Takahata N, Boag PT, Grant PR, Grant BR, Klein J (1997) How large was the founding population of Darwin’s finches? Proceedings of the Royal Society of London, Series B, Biological Sciences, 264,111-118. |
| [70] | Wang RL, Stec A, Hey J, Lukens L, Doebley J (1999) The limits of selection during maize domestication. Nature, 398,236-239. |
| [71] | West B, Zhou BX (1988) Did chickens go north? New evidence for domestication. Journal of Archaeological Science, 15,515-533. |
| [72] | Wright SI, Bi IV, Schroeder SG, Yamasaki M, Doebley JF, McMullen MD, Gaut BS (2005) The effects of artificial selection on the maize genome. Science, 308,1310-1314. |
| [73] | Wu GS, Yao YG, Qu KX, Ding ZL, Li H, Palanichamy MG, Duan ZY, Li N, Chen YS, Zhang YP (2007) Population phylogenomic analysis of mitochondrial DNA in wild boars and domestic pigs revealed multiple domestication events in East Asia. Genome Biology, 8,R245. |
| [74] | Yuan J, Rowan KF (2002) Pig domestication in ancient China. Antiquity, 76,724-732. |
| [75] | Zeder MA, Hesse B (2000) The initial domestication of goats (Capra hircus) in the Zagros mountains 10,000 years ago. Science, 287,2254-2257. |
| [76] | Zeder MA, Emshwiller E, Smith BD, Bradley DG (2006) Documenting domestication: the intersection of genetics and archaeology. Trends in Genetics, 22,139-155. |
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