综述

分子标记在濒危物种保护中的应用

  • 李媛媛 ,
  • 刘超男 ,
  • 王嵘 ,
  • 罗水兴 ,
  • 农寿千 ,
  • 王静雯 ,
  • 陈小勇
展开
  • 1. 华东师范大学生态与环境科学学院, 浙江天童森林生态系统国家野外科学观测研究站, 上海 200241
    2. 中国林业科学研究院热带林业研究所试验站, 海南乐东 572542
    3. 海南省林业科学研究所, 海口 571100
    4. 华东师范大学崇明生态研究院, 上海 200062

收稿日期: 2019-12-30

  录用日期: 2020-02-20

  网络出版日期: 2020-03-08

基金资助

国家重点研发计划(2016YFC0503100);“极小种群野生植物种质资源保护技术研究与示范”课题(2016YFC0503102);国家自然科学基金(31670540)

Applications of molecular markers in conserving endangered species

  • Li Yuanyuan ,
  • Liu Chaonan ,
  • Wang Rong ,
  • Luo Shuixing ,
  • Nong Shouqian ,
  • Wang Jingwen ,
  • Chen Xiaoyong
Expand
  • 1 Zhejiang Tiantong Forest Ecosystem National Observation and Research Station, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241
    2 Experimental Station of Research Institute of Tropical Forestry, Chinese Academy of Forestry, Ledong, Hainan 572542
    3 Hainan Forestry Institute, Haikou 571100
    4 Institute of Eco-Chongming, East China Normal University, Shanghai 200062

Received date: 2019-12-30

  Accepted date: 2020-02-20

  Online published: 2020-03-08

摘要

分子标记可揭示种群遗传和进化信息, 为制定濒危物种保护措施、指导恢复实践提供重要依据。本文主要介绍了分子标记在濒危物种保护过程不同环节中的应用, 包括: (1)正确识别保护单元, 如排除隐存种和杂交种的影响; (2)确定优先保护单元, 包括优先保护区域、优先保护物种、优先保护种群等; (3)指导迁地保护; (4)对保护工作的动态监测和评估。文章最后探讨了分子标记应用于保护的发展方向, 如开展长期的种群遗传组成监测、切实应用于保护管理实践、将基因组学等遗传信息用于全球变化背景下保护策略的制定等, 期望为分子标记技术在生物多样性保护的研究和实践中提供参考。

本文引用格式

李媛媛 , 刘超男 , 王嵘 , 罗水兴 , 农寿千 , 王静雯 , 陈小勇 . 分子标记在濒危物种保护中的应用[J]. 生物多样性, 2020 , 28(3) : 367 -375 . DOI: 10.17520/biods.2019414

Abstract

Molecular markers have been widely applied in the conservation of endangered species for revealing their population genetic variation and evolutionary history, providing essential information for making conservation strategies and conducting restoration practices. Here, we introduced the applications of molecular markers at different stages of conservation efforts: (1) Molecular markers can be used to elevate the precision of identifying conservation units such as excluding the influence of cryptic species and hybridization. (2) Phylogenetic relationships are useful for distinguishing conservation priorities for biodiversity hotspots and discerning species and populations. (3) Molecular markers can contribute to instruct the strategies in ex situ conservation programs. (4) Dynamic monitoring and assessment of conservation activities can be achieved with molecular markers. Finally, we discussed the prospects of applying molecular markers for improving conservation strategies considering global change, including long-term monitoring of genetic dynamics, the use of conservation genetics in conservation management, and the development conservation genomics.

参考文献

1 Allendorf FW, Leary RF, Hitt NP, Knudsen KL, Lundquist LL, Spruell P ( 2004) Intercrosses and the U.S. Endangered Species Act: Should hybridized populations be included as westslope cutthroat trout? Conservation Biology, 18, 1203-1213.
2 Anton RF, Schories D, Wilson NG, Wolf M, Abad M, Schrodl M ( 2016) Host specificity versus plasticity: Testing the morphology-based taxonomy of the endoparasitic copepod family Splanchnotrophidae with COI barcoding. Journal of the Marine Biological Association of the United Kingdom, 98, 231-243.
3 Butchart SHM, Walpole M, Collen B, van Strien A, Scharlemann JPW, Almond REA, Baillie JEM, Bomhard B, Brown C, Bruno J, Carpenter KE, Carr GM, Chanson J, Chenery AM, Csirke J, Davidson NC, Dentener F, Foster M, Galli A, Galloway JN, Genovesi P, Gregory RD, Hockings M, Kapos V, Lamarque J, Leverington F, Loh J, McGeoch MA, McRae L, Minasyan A, Morcillo MH, Oldfield TEE, Pauly D, Quader S, Revenga C, Sauer JR, Skolnik B, Spear D, Stanwell-Smith D, Stuart SN, Symes A, Tierney M, Tyrrell TD, Vié J, Watson R ( 2010) Global biodiversity: Indicators of recent declines. Science, 328, 1164-1168.
4 Chen XY, Li YY, Wu TY, Zhang X, Lu HP ( 2003) Size-class differences in genetic structure of Metasequoia glyptostroboides Hu et Cheng (Taxodiaceae) plantations in Shanghai. Silvae Genetica, 52, 3-4.
5 Chen XY, Lu HP, Shen L, Li YY ( 2002) Identifying populations for priority conservation of important species. Biodiversity Science, 10, 332-338. (in Chinese with English abstract)
5 [ 陈小勇, 陆慧萍, 沈浪, 李媛媛 ( 2002) 重要物种优先保护种群的确定. 生物多样性, 10, 332-338.]
6 Chiang YC, Huang BH, Chang CW, Wan YT, Lai SJ, Huang S, Liao PC ( 2013) Asymmetric introgression in the horticultural living fossil Cycas Sect. Asiorientales using a genome-wide scanning approach. International Journal of Molecular Sciences, 14, 8228-8251.
7 Douglas MR, Brunner PC ( 2002) Biodiversity of central alpine Coregonus (Salmoniformes): Impact of one-hundred years of management. Ecological Applications, 12, 154-172.
8 Edmands S ( 2007) Between a rock and a hard place: Evaluating the relative risks of inbreeding and outbreeding for conservation and management. Molecular Ecology, 16, 463-475.
9 Exposito-Alonso M, Drost H, Burbano HA, Weigel D ( 2020) The Earth BioGenome project: Opportunities and challenges for plant genomics and conservation. The Plant Journal, doi: 10.1111/tpj.14631.
10 Fi?er C, Robinson CT, Malard F ( 2018) Cryptic species as a window into the paradigm shift of the species concept. Molecular Ecology, 27, 613-635.
11 Franklin IR ( 1980) Evolutionary change in small populations. In: Conservation Biology: An Evolutionary-Ecological Perspective (eds Soule ME, Wilcox BA), pp. 135-149. Sinauer, Sunderland.
12 Hinton JW, Chamberlain MJ, Rabon DR ( 2013) Red wolf (Canis rufus) recovery: A review with suggestions for future research. Animals, 3, 722-744.
13 Hoban S, Schlarbaum S ( 2014) Optimal sampling of seeds from plant populations for ex-situ conservation of genetic biodiversity, considering realistic population structure. Biological Conservation, 177, 90-99.
14 Huang L, Wang YQ ( 2004) The application of microsatellite DNA markers in conservation genetics of endangered animals. Biodiversity Science, 12, 528-533. (in Chinese with English abstract)
14 [ 黄磊, 王义权 ( 2004) 微卫星分子标记在濒危动物保护遗传学研究中的应用. 生物多样性, 12, 528-533.]
15 Isaac NJ, Turvey ST, Collen B, Waterman C, Baillie JEM ( 2007) Mammals on the EDGE: Conservation priorities based on threat and phylogeny. PLoS ONE, 2, e296.
16 Ito Y, Enju CY, Li J, Tanaka N ( 2018) Evolutionary distinctiveness and conservation priority of the endangered Najas ancistrocarpa (Hydrocharitaceae). Systematics and Biodiversity, 16, 45-54.
17 International Union for Conservation of Nature ( IUCN) ( 2012) IUCN Red List Categories and Criteria: Version 3.1, 2nd edn. IUCN, Gland, Switzerland.
18 Jackiw RN, Mandil G, Hager HA ( 2015) A framework to guide the conservation of species hybrids based on ethical and ecological considerations. Conservation Biology, 29, 1040-1051.
19 Levin DA, Francisco-Ortega J, Jansen RK ( 1996) Hybridization and the extinction of rare plant species. Conservation Biology, 10, 10-16.
20 Lewin HA, Robinson GE, Kress WJ, Baker WJ, Coddington J, Crandall KA, Durbin R, Edwards SV, Forest F, Gilbert MTP, Goldstein MM, Grigoriev IV, Hackett KJ, Haussler D, Jarvis ED, Johnso WE, Patrinos A, Richards S, Castilla-Rubio JC, van Sluys M, Soltis PS, Xu X, Yang H, Zhang G ( 2018) Eart. BioGenome Project: Sequencing life for the future of life. Proceedings of the National Academy of Sciences, USA, 115, 4325-4333.
21 Li A, Ge S ( 2002) Advances in plant conservation genetics. Biodiversity Science, 10, 61-71. (in Chinese with English abstract)
21 [ 李昂, 葛颂 ( 2002) 植物保护遗传学研究进展. 生物多样性, 10, 61-71.]
22 Li YY, Chen XY, Zhang X, Wu TY, Lu HP, Cai YW ( 2005) Genetic differences between wild and artificial populations of Metasequoia glyptostroboides: Implications for species recovery. Conservation Biology, 19, 224-231.
23 Lu HP, Shen L, Zhang X, Fan XX, Chen XY ( 2004) Identifying populations for priority conservation. II. Models based on haplotype richness and their applications in Ginkgo biloba. Acta Ecologica Sinica, 24, 2312-2316. (in Chinese with English abstract)
23 [ 陆慧萍, 沈浪, 张欣, 樊晓霞, 陈小勇 ( 2004) 优先保护种群的确定.II. 单倍型丰富度模型及在银杏中的应用. 生态学报, 24, 2312-2316.]
24 Lopez Laphitz RL, Ezcurra C, Vidal-Russell R ( 2018) Cryptic species in the Andean hemiparasite Quinchamalium chilense (Schoepfiaceae: Santalales). Systematics and Biodiversity, 16, 260-270.
25 Mallet J ( 2005) Hybridization as an invasion of the genome. Trends in Ecology and Evolution, 20, 229-237.
26 Meegaskumbura M, Bossuyt F, Pethiyagoda R, Manamendra-Arachchi K, Bahir M, Milinkovitch MC, Schneider CJ ( 2002) Sri Lanka: An amphibian hot spot. Science, 298, 379.
27 Milián-García Y, Jensen EL, Madsen J, álvarez Alonso S, Serrano Rodríguez A, Espinosa López G, Russello MA ( 2015) Founded: Genetic reconstruction of lineage diversity and kinship informs ex situ conservation of Cuban Amazon parrots (Amazona leucocephala). Journal of Heredity, 106, 573-579.
28 Moritz C ( 1994a) Applications of mitochondrial DNA analysis in conservation: A critical review. Molecular Ecology, 3, 401-411.
29 Moritz C ( 1994b) Defining “evolutionary significant units” for conservation. Trends in Ecology and Evolution, 9, 373-375.
30 Muenchow J, Dieker P, Kluge J, Kessler M, von Wehrden H ( 2018) A review of ecological gradient research in the Tropics: Identifying research gaps, future directions, and conservation priorities. Biodiversity Conservation, 27, 273-285.
31 Pacicco L, Bodesmo M, Torricelli R, Negri V ( 2018) A methodological approach to identify agro-biodiversity hotspots for priority in situ conservation of plant genetic resources. PLoS ONE, 13, e0197709.
32 Petit RJ, El Mousadik A, Pons O ( 1998) Identifying populations for conservation on the basis of genetic markers. Conservation Biology, 12, 844-855.
33 Pollock LJ, Thuiller W, Jetz W ( 2017) Large conservation gains possible for global biodiversity facets. Nature, 546, 141-144.
34 Qiao MJ, Ran JH, Zhang HM ( 2019) The application of microsatellite markers in giant panda research. Acta Theriologica Sinica, 39, 103-110. (in Chinese with English abstract)
34 [ 乔麦菊, 冉江洪, 张和民 ( 2019) 微卫星标记在大熊猫研究中的应用进展. 兽类学报, 39, 103-110.]
35 Ravaoarimanana IB, Tiedemann R, Montagnon D, Rumpler Y ( 2004) Molecular and cytogenetic evidence for cryptic speciation within a rare endemic Malagasy lemur, the northern sportive lemur (Lepilemur septentrionalis). Molecular Phylogenetics and Evolution, 31, 440-448.
36 Ren H, Jian SG, Liu HX, Zhang QM, Lu HF ( 2014) Advances in the reintroduction of rare and endangered wild plant species. Science China: Life Sciences, 57, 603-609.
37 Rhymer JM, Simberloff D ( 1996) Extinction by hybridization and introgression. Annual Review of Ecology and Systematics, 27, 83-109.
38 Russello MA, Amato G ( 2004) Ex situ population management in the absence of pedigree information. Molecular Ecology, 13, 2829-2840.
39 Russello MA, Amato G ( 2007) On the horns of a dilemma: Molecular approaches refine ex situ conservation in crisis. Molecular Ecology, 16, 2405-2406.
40 Ryder OA ( 1986) Species conservation and systematics: The dilemma of subspecies. Trends in Ecology and Evolution, 1, 9-10.
41 Saura M, Perez-Figueroa A, Fernandez J, Toro MA, Caballero A ( 2008) Preserving population allele frequencies in ex situ conservation programs. Conservation Biology, 22, 1277-1287.
42 Shang H, Yan YH ( 2017) Natural hybridization and biodiversity conservation. Biodiversity Science, 25, 683-688. (in Chinese with English abstract)
42 [ 商辉, 严岳鸿 ( 2017) 自然杂交与生物多样性保护. 生物多样性, 25, 683-688.]
43 Struck TH, Feder JL, Bendiksby M, Birkeland S, Cerca J, Gusarov VI, Kistenich S, Larsson K, Liow LH, Nowak MD, Stedje B, Bachmann L, Dimitrov D ( 2018) Finding evolutionary process hidden in cryptic species. Trends in Ecology and Evolution, 33, 153-163.
44 Todesco M, Pascual MA, Owens GL, Ostevik KL, Moyers BT, Hubner S, Heredia SM, Hahn MA, Caseys C, Bock DG, Rieseberg LH ( 2016) Hybridization and extinction. Evolutionary Applications, 9, 892-908.
45 Tucker CM, Cadotte MW, Jonathan Davies T, Rebelo TG ( 2012) Incorporating geographical and evolutionary rarity into conservation prioritization. Conservation Biology, 26, 593-601.
46 Vane-Wright RI, Humphries CJ, Williams PH ( 1991) What to protect? Systematics and the agony of choice. Biological Conservation, 55, 235-254.
47 Wang ZF, Ge XJ ( 2009) Not only genetic diversity: Advances in plant conservation genetics. Biodiversity Science, 17, 330-339. (in Chinese with English abstract)
47 [ 王峥峰, 葛学军 ( 2009) 不仅仅是遗传多样性: 植物保护遗传学进展. 生物多样性, 17, 330-339.]
48 Wang ZF, Peng SL ( 2003) Plant conservation genetics. Acta Ecologica Sinica, 23, 158-172. (in Chinese with English abstract)
48 [ 王峥峰, 彭少麟 ( 2003) 植物保护遗传学. 生态学报, 23, 158-172.]
49 White LC, Moseby KE, Thomson VA, Donnellan SC, Austin JJ ( 2018) Long-term genetic consequences of mammal reintroductions into an Australian conservation reserve. Biological Conservation, 219, 1-11.
50 Williams SE, Hoffman EA ( 2009) Minimizing genetic adaption captive breeding programs: A review. Biological Conservation, 142, 2388-2400.
51 Witzenberger KA, Hochkirch A ( 2011) Ex situ conservation genetics: A review of molecular studies on the genetic consequences of captive breeding programmes for endangered animal species. Biodiversity and Conservation, 20, 1843-1861.
52 Xu W, Che J ( 2019) From cryptic species to biodiversity conservation in China: Status and prospects. Scientia Sinica Vitae, 49, 519-530. (in Chinese with English abstract)
52 [ 徐伟, 车静 ( 2019) 从隐存种到我国生物多样性保护研究. 现状与展望. 中国科学: 生命科学, 49, 519-530.]
53 Yan F, Lü J, Zhang B, Yuan Z, Zhao H, Huang S, Wei G, Mi X, Zou D, Xu W, Chen S, Wang J, Xie F, Wu M, Xiao H, Liang Z, Jin J, Wu S, Xu CS, Tapley B, Turvey ST, Papenfuss TJ, Cunningham AA, Murphy RW, Zhang Y, Che J ( 2018) The Chinese giant salamander exemplifies the hidden extinction of cryptic species. Current Biology, 28, R590-R592.
54 Yan WD, Wuyun TN ( 2006) Methods of research on forest plant molecular ecology. Journal of Central South Forestry University, 26, 131-137. (in Chinese with English abstract)
54 [ 闫文德, 乌云塔娜 ( 2006) 森林植物分子生态学的研究方法. 中南林学院学报, 26, 131-137.]
55 Zhang JL, Wang ZF, Li MG, Wang BS ( 2000) Molecular markers and their application in plant population research. Chinese Journal of Applied Ecology, 11, 631-636. (in Chinese with English abstract)
55 [ 张军丽, 王峥峰, 李鸣光, 王伯荪 ( 2000) 植物种群研究中心的分子标记及其应用. 应用生态学报, 11, 631-636.]
56 Zhou W, Wang H ( 2014) Pollen dispersal analysis using DNA markers. Biodiversity Science, 22, 97-108. (in Chinese with English abstract)
56 [ 周伟, 王红 ( 2014) 基于DNA分子标记的花粉流动态分析. 生物多样性, 22, 97-108.]
文章导航

/