蚯蚓基因组学的研究进展: 基于全基因组及线粒体基因组

翟俊杰, 赵慧峰, 商光申, 孙振钧, 张玉峰, 王兴

Advances in earthworm genomics: Based on whole genome and mitochondrial genome

Junjie Zhai, Huifeng Zhao, Guangshen Shang, Zhenjun Sun, Yufeng Zhang, Xing Wang

表1 蚯蚓全基因组测序基本信息

Table 1 Basic information of whole genome sequencing in earthworm

蚯蚓 Earthworm 基因组大小 Genome length 染色体数量 Number of chromosomes 染色体倍体 Chromosome ploidy GC含量 GC content (%) 蛋白编码基因数 Number of protein-coding gene 测序组装技术 Sequencing assembly technology 参考文献 References 赤子爱胜蚓 Eisenia foetida 1.05 Gb 22 2 28.6 ? Illumina HiSeq 2000 2 × 100PE 2015 赤子爱胜蚓 E. foetida 1.47 Gb 22 2 40 ? Illumina HiSeq 2500 2018 通俗腔蚓 Metaphire vulgaris 728.6 Mb 41 2 40 ? PromethION Single Molecule Platform, Illumina NovaSeq Sequencing Platform, Hi-C 2020 安德爱胜蚓 Eisenia andrei 1.3 Gb 22 2 35?45 31,817 PacBio三代测序 PacBio RS Platform, Hi-C 2020 皮质远盲蚓 Amynthas corticis 1.2 Gb 42 3 40.34 29,256 PacBio三代测序 PacBio SMRT Sequencing, Hi-C 2021