DNA条形码参考数据集构建和序列分析相关的新兴技术
刘山林

DNA barcoding and emerging reference construction and data analysis technologies
Liu Shanlin
表2 利用高通量测序平台批量获取DNA条形码的方法
Table 2 High throughput methods to achieve barcode sequences
目标序列长度
Targeted region length (bp)
优势
Advantages
劣势
Disadvantages
参考文献
Reference
~300 - 无法处理较长的目标序列; Roche 454平台
Can not work on long fragments;
Roche 454 platform
Shokralla et al, 2014
~180 简单, 易操作, 成本低
Straightforward, easy to operate,
cost-efficient
目标序列偏短, 只能用于物种初筛
Short targeted region; can only be used
for species pre-clustering
Meier et al, 2016
~650 标准DNA条形码全长
Standard full-length COI
普适性差; 需要多轮PCR过程
Poor universality; multiple rounds of PCR
Shokralla et al, 2015;
Cruaud et al, 2017
~650 易操作, 标准DNA条形码全长
Easy to operate, standard full-length COI
相对较高的计算资源
Relatively high requirement for
computational resources
Liu et al, 2017
~650 易操作, 标准DNA条形码全长
Easy to operate, standard full-length COI
SMRT平台成本高
High cost of SMRT platform
Hebert et al, 2018
~650 易操作, 标准DNA条形码全长
Easy to operate, standard full-length COI
测序平台暂时不够普及
Not a mass production
Yang et al, 2018