叶绿体DNA标记在谱系地理学中的应用研究进展
胡颖,王茜,张新新,周玮,陈晓阳,胡新生

Advancing phylogeography with chloroplast DNA markers
Hu Ying,Wang Xi,Zhang Xinxin,Zhou Wei,Chen Xiaoyang,Hu Xinsheng
表3 cpDNA和nDNA谱系分选进程比较及可能的进化过程
Table 3 Comparison of lineage sorting phases between cpDNA and nDNA and the possible evolutionary processes
nDNA/表型性状 nDNA/ Phenotypic traits cpDNA 可能的进化过程
Possible evolutionary processes
nDNA标记
nDNA markers
cpDNA标记
cpDNA markers
分类群
Taxonomic groups
参考文献
References
复系
Polyphyly
复系
Polyphyly
物种形成初期, nDNA和cpDNA均以漂变过程为主
Lineage sorting is mainly driven by drift process for both nDNA and cpDNA in the incipient stage of speciation.
LBD6 matK, trnD-T 葛藤属(豆科)
Pueraria (Leguminosae)
Egan et al, 2016
trnK intron, trnL-F 姜味草属(唇形科)
Micromeria (Lamiaceae)
Brauchler et al, 2005
ITS1-5.8S-ITS2 trnL-F, trnD-T 长喙藓属(青藓科)
Rhynchostegium (Brachytheciaceae)
Huttunen &
Ignatov, 2010
ITS atpB-rbcL 丁香蓼属(柳叶菜科)
Ludwigia (Onagraceae)
Hung et al, 2009
ITS, 表型
Phenotype
trnL-F 唇柱苣苔属 Chirita Wang YZ, et al, 2011
ITS trnT-L 火把莲属(独尾草科)
Kniphofia (Asphodelaceae)
Ramdhani et al, 2009
ITS trnL-F, psbA-trnH 瓦苇属(独尾草科)
Haworthia (Asphodelaceae)
Ramdhani et al, 2011
并系
Paraphyly
cpDNA以漂变或自然选择过程为主; nDNA存在杂交或渐渗过程
Lineage sorting is mainly driven by drift or selection process for cpDNA but by hybridization or introgression process for nDNA.
- - - -
单系
Monophyly
cpDNA以漂变或自然选择为主; nDNA存在杂交或渐渗过程
Lineage sorting is mainly driven by drift or selection process for cpDNA but by hybridization or introgression process for nDNA.
- - - -
nDNA/表型性状
nDNA/
Phenotypic traits
cpDNA 可能的进化过程
Possible evolutionary processes
nDNA标记
nDNA markers
cpDNA标记
cpDNA markers
分类群
Taxonomic groups
参考文献
References
并系
Paraphyly
复系
Polyphyly
nDNA以自然选择过程为主; cpDNA存在渐渗过程
Lineage sorting is mainly driven by selection process for nDNA but by introgression process for cpDNA.
- - - -
并系
Paraphyly
nDNA和cpDNA均以漂变过程为主, 或存在渐渗/基因流过程
Lineage sorting is mainly driven by drift process or introgression/gene flow process for both nDNA and cpDNA.
ITS, ETS trnQ-rps16,
rpl
32-trnL, rps16,
trn
S-G, trnH-psbA
可草拟库氏金鱼花
(苦苣苔科)
Columnea kucyniakii
(Gesneriaceae)
Smith et al, 2018
卫星DNA
Microsatellites DNA
atpL-H, rps16-trnK 穗花杉(红豆杉科)
Amentotaxus argotaenia (Taxaceae)
Ge et al, 2015
ITS matK, rbcL 松属单维管束松亚属(松科)
Pinus subgenus Strobus (Pinaceae)
Sying et al, 2007;
Gernandt et al, 2005
单系
Monophyly
cpDNA以漂变或自然选择过程为主Lineage sorting for cpDNA is mainly driven by drift or selection process. - -
单系
Monophyly
复系
Polyphyly
nDNA以自然选择过程为主; cpDNA以漂变过程为主或存在渐渗过程
Lineage sorting is mainly driven by selection process for nDNA but by drift or introgression process for cpDNA.
ITS trnL-F, rpl16 克非亚草属(千屈菜科)
Cuphea (Lythraceae)
Barber et al, 2010
并系
Paraphyly
nDNA以自然选择过程为主; cpDNA以漂变过程为主, 或存在渐渗过程
Lineage sorting is mainly driven by selection process for nDNA but by drift or introgression process for cpDNA.
- - -
单系
Monophyly
nDNA和cpDNA均以漂变过程为主, 或均存在自然选择过程
Lineage sorting for both nDNA and cpDNA is mainly driven by drift or selection process.
ITS, 表型
ITS, phenotype
trnT-L 常春藤(五加科)
Hedera (Araliaceae)
Valcarcel et al, 2003
表型 Phenotype rbcL, ndhF 柳叶菜科 Onagraceae Levin et al, 2003
ITS matK, trnL, trnL-F,
trn
S-G, trnD-T,
psb
M-trnD
花荵科 Polemoniaceae Johnson et al, 2008
表型 Phenotype rbcL, rps16,
atp
B-rbcL
茜草属(茜草科)
Kelloggiatorrey (Rubiaceae)
Nie et al, 2005
ITS rbcL, trnL-F,
trn
K-matK,
psb
A-trnH
春蓼属(蓼科)
Persicaria (Polygonaceae)
Kim & Donoghue,
2008
ITS1-5.8S-ITS2 trnL-F 红杉花属(花荵科)
Ipomopsis (Polemoniaceae)
Porter et al,
2010